BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49520.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1 1849 0.0 Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681 560 8e-159 > Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1 Length=1261 Score = 1849 bits (1001), Expect = 0.0 Identities = 1111/1165 (95%), Gaps = 3/1165 (0%) Strand=Plus/Plus Query 15 TTTTTCTTCTTAGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 74 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTT-TTCTTGGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 59 Query 75 GGGAAATTCTCCGTAGCTCCGACCTAGAAACTACGACTCCGGCGAGCGTTCGCCGTCAGC 134 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 60 GGGAAATTCTCCGTAGCTCCGACCTAGAAACAACGACTCCGGCGAGCGTTCGCCGTCAGC 119 Query 135 TGGAGGTGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 194 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGGAGGCGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 179 Query 195 ATGCTTTTCTTGAAAGCGATGCTTTGTTAGAAAGCAAACCCGAGCAAGAAGAAGAAGACT 254 |||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| Sbjct 180 ATGCTTTTCTTGAAAGTGAAGCTTTGTTGGAAAGCAAACCCGAGGAAGAAGAAGAAGACT 239 Query 255 GTAATGGCGATCAAAACGATGAAGAGGGAAGTGAAAACGATGATGATAAGACCGAACTAC 314 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 240 GTAATGGTGATCAAAACGATGAAGAAGGAAGTGAAAACGATGATGATAAGACCGAACCAC 299 Query 315 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATATGTCAGCTTTCACCACAAC 374 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 300 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATTTGTCAGCTTTCTCCACAAC 359 Query 375 TAGAGAAGTTTTTAGGAACTTCTCAATTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 434 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 360 TAGAGAAGTTTTTAGGAACTTCTCAGTTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 419 Query 435 CGTATATCCGAGAGCACGATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACG 494 | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 CATATATCAGAGAGCACGATTTGCAAGATCCAAAGAATAGGCGGAATATATTATGCGACG 479 Query 495 AGTCGCTTCATTCGTTATTTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCAT 554 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 480 ATTCGCTTCATTCGTTATTTCGTGTAAAGACAATTGATATGTTTCAAATGAACAAGGCAT 539 Query 555 TGGCAAAGCATATTTGGGCGCTAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGG 614 ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| || Sbjct 540 TGGCAAAGCATATTTGGCCGCTAAATGATGGACATGGGTGTGTTAAGAATGTGAAAGGGG 599 Query 615 AAGATGTTGATGAGACATCAGGGgaaagagacgagaaagatgtaaaaatcgaagaagcgt 674 |||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| Sbjct 600 AAGATGAAGATGAGACATCAGGGGAAAGATATGAGAAAGAGGTAAAAATCGAAGAAGCGG 659 Query 675 tagagaataacgaagaag-agagtagagaagaagaagaTCGTAGTGTCCGAAAACGCAAA 733 |||||||||| ||||||| | ||| ||||||| ||||||||||||||||||||||||||| Sbjct 660 TAGAGAATAATGAAGAAGTA-AGTGGAGAAGAGGAAGATCGTAGTGTCCGAAAACGCAAA 718 Query 734 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGTGGTTTT 793 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 719 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGCGGCTTT 778 Query 794 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCT 853 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 779 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGGCTCAGTTAGCT 838 Query 854 AGAACAGAGGTTGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 913 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AGAACAGAGGTTGTGAGAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 898 Query 914 TCTGATAAACGCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCT 973 || ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 899 TCAGATAAACGCACAATAATATGCGATGAATCATTACGGTCTCTGTTCCCTGTTGAGTCT 958 Query 974 ATCAATATGTTTCAAATGAACAAACAACTAGCCAAACACATTTGGCCTCTAGTACAGGAG 1033 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 959 ATCAATATGTTTCAAATGAACAAACAACTAACCAAGCACATTTGGCCTCTAGTACAGGAG 1018 Query 1034 GATGAAGCAGGAACAACTAATGATCCAGAGAAGGGAAAGCAGAAAATGAAAATGGAGACA 1093 |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| | Sbjct 1019 GATGAAGCAGGAACAACTAACGATTCAGAGAAGGGAAAACAGAAAATGAAAATGGAGATA 1078 Query 1094 GACGAAGATAATGATGAATCAAATGAAGAAAAGGCTACTTCATCAAGAATCAAAACTGAA 1153 |||| |||| |||||||| ||||||| |||||||||||||||||||||||||| |||||| Sbjct 1079 GACGCAGATTATGATGAAGCAAATGATGAAAAGGCTACTTCATCAAGAATCAAGACTGAA 1138 Query 1154 GAATGATTCGAGTGAGAAGCTGAAA 1178 |||||||||||||||||||||||| Sbjct 1139 CAATGATTCGAGTGAGAAGCTGAAA 1163 Score = 137 bits (74), Expect = 2e-31 Identities = 86/91 (95%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 1228 GGTCTCAAAGCTTTCTAACTAACCACTTCATCAAGACTGAAC-AATGATTCTGTCATTCG 1286 ||||||||||| |||| ||||||||||||||||||||| ||| |||||||| |||||||| Sbjct 1174 GGTCTCAAAGC-TTCTGACTAACCACTTCATCAAGACT-AACCAATGATTC-GTCATTCG 1230 Query 1287 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1317 ||||||||||||||||||||||||||||||| Sbjct 1231 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1261 > Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681 Length=1392 Score = 560 bits (303), Expect = 8e-159 Identities = 615/763 (81%), Gaps = 31/763 (4%) Strand=Plus/Plus Query 277 AGAGGGAAGTGAAAACGATGATGATAA-GACCGAACTACCGGTAAAGGCTAAGAAACGTG 335 ||| |||||||||| || || || || || |||| || |||||||| |||||||| | Sbjct 279 AGATGGAAGTGAAAGTGAGGAAGAGAAGGA-GGAACGGCCAGTAAAGGCCAAGAAACGAG 337 Query 336 GAGGTGGGTTTAACAAAATATGTCAGCTT-TCACCACAACTAGAG-AAGTTTTTAGGAAC 393 | ||||| |||| |||| ||| |||| || || |||||||| ||| ||||| || ||| | Sbjct 338 GTGGTGGCTTTACCAAAGTATCTCAG-TTATCTCCACAACTTGAGAAAGTTGTT-GGAGC 395 Query 394 TTCTCAATT-GGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCGTATATCCGAGAGCACG 452 ||||| || || |||||| ||||||||||||||||||||||| |||||||||||| ||| Sbjct 396 ATCTCAGTTAGG-TCGAACCGAGGTTGTGAAGAAAATGTGGGCCTATATCCGAGAGAACG 454 Query 453 ATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACGAGTCGCTTCATTCGTTAT 512 |||||||||| |||| | | ||| |||| ||| | || ||||||| ||| ||||| || | Sbjct 455 ATTTGCAAGACCCAAAGGACAGGAGGAAGATAGTGTGTGACGAGTTGCTGCATTCCTTGT 514 Query 513 TTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTGGG 572 | ||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| || Sbjct 515 TCCGTGTAAAGACCATTAATATGTTTCAAATGAGCAAGGCATTAACCAAGCATATTT-GG 573 Query 573 CGC-TAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGGAAGATGTTGATGAGACA 631 | | || |||||||||||||||| ||| ||||||||||| ||||||| || ||| || Sbjct 574 CCCTTAGGTGATGGAGATGGGTGTGCTAACAATGTGAAAGAAGAAGATGAAGAGGAGGCA 633 Query 632 TCAG-GGgaaagagacgagaaagatgta-aaaatcgaagaagcgttagagaataacgaag 689 |||| ||| || ||| ||||| | | | ||| |||||||| | ||||||||| |||| Sbjct 634 TCAGAGGG-AACAGATAAGAAA-AGGGAGCAAAGCGAAGAAGTGGAAGAGAATAAGGAAG 691 Query 690 aagagagtag-agaagaagaagaTCGTAGTGTCCGAAAACGCAAACGCAAGAAAAGAAAA 748 |||| ||| | ||| || |||| | | ||| | || |||||| || | || ||| ||| Sbjct 692 AAGAAAGT-GAAGAGGAGGAAGTTAGGAGTTTGCGGAAACGC-AA-G--AG-AAA-AAAG 744 Query 749 CCAGCCAAGTCCG-AGGAGAA-ACC-GAAGAAAA-AAGGAGGTGGTTTTACCAAAGTTTG 804 || |||||||| | | ||||| || ||||||| ||||||||| ||| | |||||||| Sbjct 745 CCTGCCAAGTCGGTA-GAGAAGCCCAAAAGAAAAGGAGGAGGTGGCTTTGCTAAAGTTTG 803 Query 805 CAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCTAGAACAGAGGT 864 ||| || || || || |||||||| |||||||| | | | ||||| || || ||||| Sbjct 804 CAGCCTCTCGCCGGAGCTTCAGGCATTTACTGGGGTGACAGAATTAGCCAGGACCGAGGT 863 Query 865 TGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCC-ATCTGATAAAC 923 |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct 864 TGTGAAAATGCTTTGGAAGTACATAAAGGAGAACAATTTGCAAGATCCGA-ATGATAAAC 922 Query 924 GCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCTATCAATATGT 983 ||| |||||||||||||||||||||||| ||| | |||||| | ||||| |||||||||| Sbjct 923 GCATAATAATATGCGACGAATCATTGCGATCTTTATTCCCTTTCGAGTCCATCAATATGT 982 Query 984 TTCAAATGAACAAACAACTAGCCAAA-CACATTTGGCCTCTAG 1025 ||||||||| |||| ||| | ||| ||||| |||||| ||| Sbjct 983 TTCAAATGAGTAAACTGCTAAC-AAAGCACATATGGCCTTTAG 1024 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5