BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49520.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1 1849 0.0
Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681 560 8e-159
> Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1
Length=1261
Score = 1849 bits (1001), Expect = 0.0
Identities = 1111/1165 (95%), Gaps = 3/1165 (0%)
Strand=Plus/Plus
Query 15 TTTTTCTTCTTAGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 74
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTT-TTCTTGGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 59
Query 75 GGGAAATTCTCCGTAGCTCCGACCTAGAAACTACGACTCCGGCGAGCGTTCGCCGTCAGC 134
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 GGGAAATTCTCCGTAGCTCCGACCTAGAAACAACGACTCCGGCGAGCGTTCGCCGTCAGC 119
Query 135 TGGAGGTGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGAGGCGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 179
Query 195 ATGCTTTTCTTGAAAGCGATGCTTTGTTAGAAAGCAAACCCGAGCAAGAAGAAGAAGACT 254
|||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||
Sbjct 180 ATGCTTTTCTTGAAAGTGAAGCTTTGTTGGAAAGCAAACCCGAGGAAGAAGAAGAAGACT 239
Query 255 GTAATGGCGATCAAAACGATGAAGAGGGAAGTGAAAACGATGATGATAAGACCGAACTAC 314
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 240 GTAATGGTGATCAAAACGATGAAGAAGGAAGTGAAAACGATGATGATAAGACCGAACCAC 299
Query 315 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATATGTCAGCTTTCACCACAAC 374
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 300 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATTTGTCAGCTTTCTCCACAAC 359
Query 375 TAGAGAAGTTTTTAGGAACTTCTCAATTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 434
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TAGAGAAGTTTTTAGGAACTTCTCAGTTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 419
Query 435 CGTATATCCGAGAGCACGATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACG 494
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CATATATCAGAGAGCACGATTTGCAAGATCCAAAGAATAGGCGGAATATATTATGCGACG 479
Query 495 AGTCGCTTCATTCGTTATTTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCAT 554
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 ATTCGCTTCATTCGTTATTTCGTGTAAAGACAATTGATATGTTTCAAATGAACAAGGCAT 539
Query 555 TGGCAAAGCATATTTGGGCGCTAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGG 614
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 540 TGGCAAAGCATATTTGGCCGCTAAATGATGGACATGGGTGTGTTAAGAATGTGAAAGGGG 599
Query 615 AAGATGTTGATGAGACATCAGGGgaaagagacgagaaagatgtaaaaatcgaagaagcgt 674
|||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 600 AAGATGAAGATGAGACATCAGGGGAAAGATATGAGAAAGAGGTAAAAATCGAAGAAGCGG 659
Query 675 tagagaataacgaagaag-agagtagagaagaagaagaTCGTAGTGTCCGAAAACGCAAA 733
|||||||||| ||||||| | ||| ||||||| |||||||||||||||||||||||||||
Sbjct 660 TAGAGAATAATGAAGAAGTA-AGTGGAGAAGAGGAAGATCGTAGTGTCCGAAAACGCAAA 718
Query 734 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGTGGTTTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 719 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGCGGCTTT 778
Query 794 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCT 853
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGGCTCAGTTAGCT 838
Query 854 AGAACAGAGGTTGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 913
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGAACAGAGGTTGTGAGAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 898
Query 914 TCTGATAAACGCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCT 973
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 899 TCAGATAAACGCACAATAATATGCGATGAATCATTACGGTCTCTGTTCCCTGTTGAGTCT 958
Query 974 ATCAATATGTTTCAAATGAACAAACAACTAGCCAAACACATTTGGCCTCTAGTACAGGAG 1033
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 959 ATCAATATGTTTCAAATGAACAAACAACTAACCAAGCACATTTGGCCTCTAGTACAGGAG 1018
Query 1034 GATGAAGCAGGAACAACTAATGATCCAGAGAAGGGAAAGCAGAAAATGAAAATGGAGACA 1093
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |
Sbjct 1019 GATGAAGCAGGAACAACTAACGATTCAGAGAAGGGAAAACAGAAAATGAAAATGGAGATA 1078
Query 1094 GACGAAGATAATGATGAATCAAATGAAGAAAAGGCTACTTCATCAAGAATCAAAACTGAA 1153
|||| |||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1079 GACGCAGATTATGATGAAGCAAATGATGAAAAGGCTACTTCATCAAGAATCAAGACTGAA 1138
Query 1154 GAATGATTCGAGTGAGAAGCTGAAA 1178
||||||||||||||||||||||||
Sbjct 1139 CAATGATTCGAGTGAGAAGCTGAAA 1163
Score = 137 bits (74), Expect = 2e-31
Identities = 86/91 (95%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 1228 GGTCTCAAAGCTTTCTAACTAACCACTTCATCAAGACTGAAC-AATGATTCTGTCATTCG 1286
||||||||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1174 GGTCTCAAAGC-TTCTGACTAACCACTTCATCAAGACT-AACCAATGATTC-GTCATTCG 1230
Query 1287 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1317
|||||||||||||||||||||||||||||||
Sbjct 1231 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1261
> Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681
Length=1392
Score = 560 bits (303), Expect = 8e-159
Identities = 615/763 (81%), Gaps = 31/763 (4%)
Strand=Plus/Plus
Query 277 AGAGGGAAGTGAAAACGATGATGATAA-GACCGAACTACCGGTAAAGGCTAAGAAACGTG 335
||| |||||||||| || || || || || |||| || |||||||| |||||||| |
Sbjct 279 AGATGGAAGTGAAAGTGAGGAAGAGAAGGA-GGAACGGCCAGTAAAGGCCAAGAAACGAG 337
Query 336 GAGGTGGGTTTAACAAAATATGTCAGCTT-TCACCACAACTAGAG-AAGTTTTTAGGAAC 393
| ||||| |||| |||| ||| |||| || || |||||||| ||| ||||| || ||| |
Sbjct 338 GTGGTGGCTTTACCAAAGTATCTCAG-TTATCTCCACAACTTGAGAAAGTTGTT-GGAGC 395
Query 394 TTCTCAATT-GGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCGTATATCCGAGAGCACG 452
||||| || || |||||| ||||||||||||||||||||||| |||||||||||| |||
Sbjct 396 ATCTCAGTTAGG-TCGAACCGAGGTTGTGAAGAAAATGTGGGCCTATATCCGAGAGAACG 454
Query 453 ATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACGAGTCGCTTCATTCGTTAT 512
|||||||||| |||| | | ||| |||| ||| | || ||||||| ||| ||||| || |
Sbjct 455 ATTTGCAAGACCCAAAGGACAGGAGGAAGATAGTGTGTGACGAGTTGCTGCATTCCTTGT 514
Query 513 TTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTGGG 572
| ||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| ||
Sbjct 515 TCCGTGTAAAGACCATTAATATGTTTCAAATGAGCAAGGCATTAACCAAGCATATTT-GG 573
Query 573 CGC-TAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGGAAGATGTTGATGAGACA 631
| | || |||||||||||||||| ||| ||||||||||| ||||||| || ||| ||
Sbjct 574 CCCTTAGGTGATGGAGATGGGTGTGCTAACAATGTGAAAGAAGAAGATGAAGAGGAGGCA 633
Query 632 TCAG-GGgaaagagacgagaaagatgta-aaaatcgaagaagcgttagagaataacgaag 689
|||| ||| || ||| ||||| | | | ||| |||||||| | ||||||||| ||||
Sbjct 634 TCAGAGGG-AACAGATAAGAAA-AGGGAGCAAAGCGAAGAAGTGGAAGAGAATAAGGAAG 691
Query 690 aagagagtag-agaagaagaagaTCGTAGTGTCCGAAAACGCAAACGCAAGAAAAGAAAA 748
|||| ||| | ||| || |||| | | ||| | || |||||| || | || ||| |||
Sbjct 692 AAGAAAGT-GAAGAGGAGGAAGTTAGGAGTTTGCGGAAACGC-AA-G--AG-AAA-AAAG 744
Query 749 CCAGCCAAGTCCG-AGGAGAA-ACC-GAAGAAAA-AAGGAGGTGGTTTTACCAAAGTTTG 804
|| |||||||| | | ||||| || ||||||| ||||||||| ||| | ||||||||
Sbjct 745 CCTGCCAAGTCGGTA-GAGAAGCCCAAAAGAAAAGGAGGAGGTGGCTTTGCTAAAGTTTG 803
Query 805 CAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCTAGAACAGAGGT 864
||| || || || || |||||||| |||||||| | | | ||||| || || |||||
Sbjct 804 CAGCCTCTCGCCGGAGCTTCAGGCATTTACTGGGGTGACAGAATTAGCCAGGACCGAGGT 863
Query 865 TGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCC-ATCTGATAAAC 923
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 864 TGTGAAAATGCTTTGGAAGTACATAAAGGAGAACAATTTGCAAGATCCGA-ATGATAAAC 922
Query 924 GCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCTATCAATATGT 983
||| |||||||||||||||||||||||| ||| | |||||| | ||||| ||||||||||
Sbjct 923 GCATAATAATATGCGACGAATCATTGCGATCTTTATTCCCTTTCGAGTCCATCAATATGT 982
Query 984 TTCAAATGAACAAACAACTAGCCAAA-CACATTTGGCCTCTAG 1025
||||||||| |||| ||| | ||| ||||| |||||| |||
Sbjct 983 TTCAAATGAGTAAACTGCTAAC-AAAGCACATATGGCCTTTAG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5