BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49530.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923365 jgi|Araly1|923365|scaffold_104646.1 1567 0.0
> Ahg923365 jgi|Araly1|923365|scaffold_104646.1
Length=1058
Score = 1567 bits (848), Expect = 0.0
Identities = 985/1052 (94%), Gaps = 6/1052 (1%)
Strand=Plus/Plus
Query 85 CTGTAACATAATCATCATGCGGCCGCGTTACAGTCTGATTCTGTCTGCAATGCGGCTAAT 144
|||||| || ||||||||| ||| ||||||| |||| ||||||||||||||||||| ||
Sbjct 8 CTGTAAGATTATCATCATGAGGCATCGTTACACTCTGGTTCTGTCTGCAATGCGGCTGAT 67
Query 145 ACGACCGTCCAACCGCCG---TCTAAGTTCGATCGCAAGCTCCGACTCTGAGTTCATTTC 201
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 68 ACGACCGTCCAACCGCCGCCATCTAACTTCGATCGCAAGCCCCGACTCTGAGTTCATTTC 127
Query 202 ATACATGAAGAATAAGGCTAAGTCCATCAACAAAGCACTAGACAATTCAATTCCTCTTTG 261
||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 128 ATATATGAACAATAAGGCTAAGTCCATCAATAAAGCACTAGACGATTCCATTCCTCTTTG 187
Query 262 CAACAATTTTGTTCCTCTTTGGGAGCCAGTACTCGAGGTTCACAAAGCTATGAGGTACAC 321
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 188 CAACAATTCCGTTCCTCTTTGGGAGCCAGTACTCGAGGTTCGCGAAGCTATGAGGTACAC 247
Query 322 GCTTCTCCCAGGCGGAAAACGAGTAAGGCCAATGCTCTGTTTGGTCGCTTGCGAGCTCGT 381
||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 248 GCTTCTCTCAGGCGGGAAACGAGTAAGGCCAATGCTTTGTTTGGTCGCTTGCGAGCTCGT 307
Query 382 AGGTGGCCAAGAGTCAACCGCAATGCCAGCAGCCTGTGCGGTTGAGATGATTCACGCAGC 441
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 308 AGGTGGCCAAGAGTCAACAGCAATGCCTGCAGCCTGTGCAGTTGAGATGATTCACGCTTC 367
Query 442 GTCGCTCATCCTAGACGACCTTCCTTGTATGGATGACGACAGCCTCCGCCGTGGAAAACC 501
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 368 GTCGCTTATCCTAGACGACCTTCCTTGCATGGATGACGACAGCCTCCGCCGTGGAAAACC 427
Query 502 CACCAACCATAAAGTTTTTGGCGAGAAAACATCCATCTTGGCCTCTAATGCGCTCAGGTC 561
||||||||||||||| ||||||||||||||| ||||||||||| ||||||| || | |||
Sbjct 428 CACCAACCATAAAGTCTTTGGCGAGAAAACAGCCATCTTGGCCGCTAATGCCCTTATGTC 487
Query 562 TTTGGCCGTCAAGCAGACATTGGCATCGACCTCATTGGGGGTGACTTCAGAGAGGGTTCT 621
|||||| ||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 488 TTTGGCGGTCGAGCAGACGTTGGCATCAACCTCATTGGGGGTGACTTCAGAAAGGGTTCT 547
Query 622 TCGGGCTGTTCAGGAGATGGCGAGAGCTGTTGGGACAGAGGGACTTGTGGCAGGCCAAGC 681
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 548 TCGGGCTGTTCAGGAGATGGCGAGAGCTGTTGGGATAGAGGGACTTGTGGCAGGCCAAGC 607
Query 682 AGCGGATTTGGCCGGAGAAAGGATGAGTTTTAAGAAC-GAAGACGACGAATTGAGATATC 740
||| ||||||||||||| ||||||||||||| || || |||||||| | |||||||||||
Sbjct 608 AGCAGATTTGGCCGGAGGAAGGATGAGTTTTGAG-ACAGAAGACGAGGGATTGAGATATC 666
Query 741 TTGAGTTGATGCATGTTCATAAAACCGCGGTTTTGGTTGAAGCTGCGGCTGTTGTGGGAG 800
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGAGTTCATTCATATTCATAAAACCGCGGTTTTGGTTGAAGCTGCGGCTGTTGTGGGAG 726
Query 801 CTATAATGGGAGGTGGGTCTGATGAAGAGATTGAGAGGCTTAAGAGCTACGCGAGGTGCG 860
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 727 CTATAATGGGAGGTGGGTCCGATGAAGAGATTGAGAGGCTTAAGAGCTACGCGAGATGCG 786
Query 861 TTGGACTGATGTTTCAGGTGATGGATGATGTACTCGATGAGACCAAGTCTTCCGAGGAGC 920
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 787 ATGGACTGATGTTTCAGGTGATGGATGATGTGCTTGATGAGACCAAGTCGTCCGAGGAGC 846
Query 921 TTGGGAAAACTGCCGGTAAAGATTTGATCACCGGAAAGCTGACGTATCCGAAGGTGATGG 980
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 847 TTGGGAAAACTGCCGGAAAAGATTTGATCACCGGAAAGCTTACTTATCCGAAGGTGATGG 906
Query 981 GTGTGGACAATGCGAGAGAATATGCAAAGAGGTTGAACAGAGAAGCGCAGGAACATCTTC 1040
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GTGTGGAGAATGCGAGAGAATATGCAAAGAGGTTGAACAGAGAAGCGCAGGAACATCTTC 966
Query 1041 AGGGGTTTGATTCTGACAAGGTGGTTCCTTTGTTGTCTCTCGCTGATTATATTGTCAAGA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGGGGTTTGATTCTGACAAGGTGGTTCCTTTGTTGTCTCTCGCTGATTATATTGTCAAGA 1026
Query 1101 GACAAAACTGACTGTTGCACCATAGCTT-AAT 1131
|||||||||||||||| | ||||||||| |||
Sbjct 1027 GACAAAACTGACTGTTACTCCATAGCTTTAAT 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5