BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49560.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474091 jgi|Araly1|474091|fgenesh2_kg.1__4045__AT1G49560.1 1720 0.0
Ahg490936 jgi|Araly1|490936|fgenesh2_kg.7__369__AT4G37180.2 73.1 5e-12
> Ahg474091 jgi|Araly1|474091|fgenesh2_kg.1__4045__AT1G49560.1
Length=1296
Score = 1720 bits (931), Expect = 0.0
Identities = 1215/1340 (91%), Gaps = 68/1340 (5%)
Strand=Plus/Plus
Query 109 TTGAGATCATGCCAAATTCTGGAAAAAG-TTTGAGTTTTTAATTCGAATCGAGaaaaaat 167
||| |||||||||||||||||| ||||| ||||||||||||| | |||||||| ||||
Sbjct 1 TTGGGATCATGCCAAATTCTGG-AAAAGTTTTGAGTTTTTAA---G-ATCGAGAACAAAT 55
Query 168 aaaaaTGGGTTCTTTAGGTGATGAGCTTAGTTTGGGATCGATCTTTGGGAGAGGAGTTTC 227
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 56 AAAAATGGGTTCTTTGGGTGATGAGCTGAGTTTGGGATCGATCTTTGGGAGAGGAGTTTC 115
Query 228 GATGAATGTTGTGGCGGTTGAGAAAGTTGATGAACATGTTAAGAAGCTTGAAGAAGAGAA 287
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GATGAATGTTGTAGCGGTGGAGAAAGTTGATGAACATGTTAAGAAGCTTGAAGAAGAGAA 175
Query 288 GAGAAAGCTCGAAAGTTGTCAACTTGAGCTTCCTCTGTCTTTGCAGATTTTAAACGATGC 347
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAGAAAGATCGAAAGTTGTGAACTTGAGCTTCCTCTGTCTTTGCAGATTTTAAACGATGC 235
Query 348 GATTTTGTATCTGAAGGATAAGAGATGTTCAGAGATGGAGACTCAACCATTGTTGAAAGA 407
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 GATTTTGTATCTCAAGGATAAGAGATGTTTAGAGATGGAGACTCAACCATTGTTGAAAGA 295
Query 408 TTTCATTTCTGTTAATAAACCTATTCAAGGAGAAAGAGGAATAGAATTGCTGAAAAGAGA 467
|||||| ||| ||||| || | | || ||| ||| | || | | | |
Sbjct 296 TTTCATCTCTTTTAATGAA--T-T----GGTGAA-GAG-A---GA-T-G---A---G--- 332
Query 468 GGAGCTAATGAGGGAGAAGAAGTTTCAGCAATGGAAAGCTAATGATGATCACACTAGTAA 527
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 ----CTAATGATGGAGAAGAAGTTTCAGCAATGGAAAGCTAATGATGATCACACTAGTAA 388
Query 528 GATCAAGAGCAAGCTTGAGATTAAGAGAAATGAGGAGAAATCTCCTATGTTGTTGATTCC 587
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 389 GATCAAGAGCAAGCTTGAGATTGAGAGAAATGAGGAGAAATCTTCTATGTTGTTGATTCC 448
Query 588 AAAGGTGGAAACTGGTTTAGGCCTCGGTTTAAGTTCGAGTTCGATAAGAAGAAAAGGGAT 647
||| || |||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 449 AAAAGTAGAAACTGGTTTAGGCCTCGGTTTAGGTTTGAGTTCCATAAGAAGAAAAGGGAT 508
Query 648 TGTTGCCTCATGTGGC---TTTACTTCTAACTCTATGCCACAACCACCA--AC-ACCAGC 701
||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 509 TGTTGCCTCTTGTGGTGGATTTACTTCTAACTCTATGCCACAACCACCACCACCACCAGC 568
Query 702 AGTA---CCACAACAACCAGCATTTCTTAAGCAGCAAGCTTTACGGAAGCAAAGAAGGTG 758
|||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 569 AGTAGTACCACAGCAACCAGCATTTCTTCAGCAGCAAGCTTTAAGGAAGCAAAGAAGGTG 628
Query 759 TTGGAATCCAGAGTTGCATCGCCGATTTGTCGATGCATTGCAACAGCTAGGTGGACCGGG 818
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 629 TTGGAATCCTGAGTTGCATCGCCGTTTTGTCGATGCATTGCAACAGCTAGGTGGACCGGG 688
Query 819 AGTGGCAACTCCTAAACAAATTAGAGAACATATGCAAGAAGAAGGCTTAACCAATGATGA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AGTGGCAACTCCTAAACAAATTAGAGAACATATGCAAGAAGAAGGCTTAACCAATGATGA 748
Query 879 AGTCAAGAGTCATTTACAGAAATACAGGTTACACATCAGGAAGCCAAATTCGAATGCGGA 938
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 749 AGTCAAGAGTCATTTACAGAAATACAGGTTACACATCAGGAAGCCGAATTCGAATGCGGA 808
Query 939 GAAACAATCAGCAGTTGTTTTAGGGTTTAACTTGTGGAATTCTTCAGCACAAGATGAAGA 998
|||||||||||||||||||||||||||||| || |||||||| ||| | ||||| |||||
Sbjct 809 GAAACAATCAGCAGTTGTTTTAGGGTTTAAGTTATGGAATTCATCATCGCAAGAGGAAGA 868
Query 999 AGAGACATGTGAAGGAGGAGAATCATTGAAGAGAAGCAATGCGCAATCAGATTCTCCTCA 1058
||| ||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 869 AGAAACAGGTGAAGGAGGAGAATCATCGAAGAGAAGCAATTCGCAATCGGATTCTCCTCA 928
Query 1059 AGGTCCTTTGCAGTTACCGTCTACAACAACAACAACTGGTGGAGATAGTAGCATGGAAGA 1118
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 929 AGGTCCTTTGCAGTTACCTTCTACAACAACTACAACTGGTGGAGATAGTAGCATGGAAGA 988
Query 1119 TGTTGAAGATGCTAAGTCTGAGAGCTTTCAACTGGAGAGATTGAGATCACCATAAATCTC 1178
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||
Sbjct 989 TGTTGAAGATGCTAAGTCTGAGAGCATTCAAATGGAGAGATTGAGATCTCCATAAACCTC 1048
Query 1179 AAGAAACCAAACTCTTGATCACGGTTTTGTTATTTTGGATTCATTACTATATCTATTAGT 1238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1049 AAGAAACCAAACTCTTGATCACGGTTTTGTTATTTTGGATTCATTACTATTTCTATTAGT 1108
Query 1239 AGTGAATGAGAACAATAATTATAGAAAGGTT-TA--TAGATATATATATAGAGA-AAAA- 1293
||||||||||||||||||||||||||| ||| || || ||||||||||||||| ||||
Sbjct 1109 AGTGAATGAGAACAATAATTATAGAAAAGTTATAGATATATATATATATAGAGAGAAAAA 1168
Query 1294 ---GAG--A--GAGTGAGGATGGTTCAAATTATTTGCAGAGATTAT-ACTTAGCCTTGtt 1345
||| | ||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1169 AAAGAGCTATAGAGTGAGGATGGTTCAAATTATTTGCAGAGATTGTTA-TTAGCCTTGTT 1227
Query 1346 ttt-gtaaacggctttttttggttgggtttttatttttCTTGAGGCATTATCCAATATTC 1404
|| ||| |||||||||| ||||||| ||| | ||| |||||||||| ||| |
Sbjct 1228 TTGCGTA--CGGCTTTTTT-GGTTGGGGTTTAAATTT----GAGGCATTAT----TATCC 1276
Query 1405 AAGTAATAATTTTGATGTTT 1424
|||||||||||||| |||||
Sbjct 1277 AAGTAATAATTTTGGTGTTT 1296
> Ahg490936 jgi|Araly1|490936|fgenesh2_kg.7__369__AT4G37180.2
Length=1391
Score = 73.1 bits (39), Expect = 5e-12
Identities = 71/86 (83%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 819 AGTGGCAACTCCTAAA-CAAATTAGAGAACAT-ATGCAAGAAGAAGGCTTAACCAATGAT 876
|||||| || || ||| || ||||||| | | ||| ||| || || ||||||||||||
Sbjct 778 AGTGGCTACACC-AAAGCAGATTAGAG-ATTTGATGAAAGTTGATGGTTTAACCAATGAT 835
Query 877 GAAGTCAAGAGTCATTTACAGAAATA 902
|||||||||||||||||||| |||||
Sbjct 836 GAAGTCAAGAGTCATTTACAAAAATA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5