BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49570.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914052 jgi|Araly1|914052|Al_scaffold_0001_4306 1712 0.0
> Ahg914052 jgi|Araly1|914052|Al_scaffold_0001_4306
Length=1053
Score = 1712 bits (927), Expect = 0.0
Identities = 1011/1053 (96%), Gaps = 0/1053 (0%)
Strand=Plus/Plus
Query 42 ATGGACCACAAAATGTCAATGTATTTGTTTGTGTCTTACCTAGCAATCTTTACTCTTTTC 101
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGACCACAAAATCTCAATGTATTTGTTTGTGTCTTACCTAGCAGTCTTTACTCTTTTC 60
Query 102 TTCAAAGGCTTTGTCTCCTCGTTTCCTTCGGGATATAACAATGGTTACAACAATGGTCAC 161
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCAAAGGCTTTGTCTCCTCGTTTCCTTCGGGATATAACAATGGTTACAATAATGGTCAC 120
Query 162 GGACATGGACTAACTAGCAATCTCAACTATCGATTCTATGACCGGTCTTGTCCGCGTCTT 221
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GGATATGGACTAACTAGCAATCTCAACTATCGATTCTATGACCGGTCTTGTCCTCGTCTT 180
Query 222 CAAACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTCGAATCGCTGCA 281
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CAGACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTAGAATCGCTGCG 240
Query 282 TCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATGGATGTGATGGATCTATACTT 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATGGATGTGATGGATCTATACTT 300
Query 342 CTGAACGATTCAGAGGATTTCAAAGGAGAGAAGAACGCTCAGCCAAACCGAAACTCAGTC 401
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 CTGAACGATTCCGAGGATTTCAAAGGAGAGAAGAACGCTCGGCCAAACCGAAACTCAGTC 360
Query 402 CGTGGATTCGAAGTCATTGAAGACATTAAATCTGATATCGAAAGTTCTTGTCCCTTAACA 461
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTGGCTTCGAAGTCATTGAAGACATTAAATCTGATATCGAAAGTTCTTGTCCCTTAACA 420
Query 462 GTTTCATGCGCTGACATAGTTGCTCTCGCGGCTAGAGAAGCTGTCGTCCTCACTGGAGGA 521
|||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 421 GTTTCATGCGCTGACATAGTTGCTCTGGCAGCTAGAGAAGCCGTCGTCCTTACTGGAGGG 480
Query 522 CCGTTTTGGCCCGTGCCTTTGGGACGAAGGGACTCATTAACGGCGAGTGAGCAAGCGGCG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGTTTTGGCCCGTGCCTTTGGGACGAAGGGACTCATTAACGGCGAGTGAGCAAGCGGCG 540
Query 582 AATACAAATCTGCCATCTCCGTTTGAGGCGTTGGAGAATATAACAGCCAAGTTCGTGACC 641
||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 541 AATACAAATCTGCCATCTCCGTTGGAGCCGTTGGAGAATATAACGGCCAAGTTCGTGACC 600
Query 642 CTTGGACTCGACCTCAAGGACGTTGTTGTCCTCTCAGGAGCACATACTATAGGATTTGCT 701
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CTTGGACTCGACCTCAAGGATGTTGTTGTCCTCTCAGGAGCACACACTATAGGATTTGCT 660
Query 702 CAATGTTTCGTGATCAAGCATAGACTCTTCAACTTCAAGGGCTCAGGCCAGCCTGACCCA 761
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 CAATGTTTCGTGTTCAAGCACAGGCTCTTCAACTTCAAGGGCTCAGGCCAGCCTGACCCA 720
Query 762 AACCTAGCCGCTTCCTCAGCACTTCTCTCTAAGCTAAAGGACACGTGTCCTAACGTGGAC 821
|||||||| ||||| || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct 721 AACCTAGCTGCTTCATCGGCTCTTCTCTCTAAGCTAAAGGACACATGTCCTAATGTGGAC 780
Query 822 TCCTCAGACTCTAAGCTCGCTGCTCTTGACGCAGCTAGCTCAGTCAAGTTTGACAATGCT 881
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTCGGACTCTAAGCTCGCAGCTCTTGACGCAGCTAGCTCAGTCAAGTTTGACAATGCT 840
Query 882 TACTACGTGAACTTAATGAACAACATAGGACTGTTGGATTCTGATCAAACCCTAATGACA 941
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 TACTACGTGAACTTAGTGAACAACATAGGACTGTTGGATTCCGATCAAACCCTAATGACG 900
Query 942 GATCCTACGGCTGCCGCCTTGGTGAAGTCGTACAGCGAGAATCCGTACTTGTTCTCGAGG 1001
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 901 GATCCTACGGCTGCCGCCTTGGTGAAGTCGTACAGCGAGAATCCATACTTGTTCTCGAAG 960
Query 1002 GATTTCGCAGTTTCAATGGTTAAAATGGGGAATATCGGAGTTATGACCGGAAGTGATGGA 1061
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GATTTCGTAGTTTCAATGGTTAAAATGGGGAATATCGGAGTTATGACAGGAAGTGATGGA 1020
Query 1062 GTAATTCGAGGAAAATGTGGATTTCCAGGTTAA 1094
|| ||||||| ||||||||||||||||||||||
Sbjct 1021 GTCATTCGAGCAAAATGTGGATTTCCAGGTTAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5