BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49580.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474093 jgi|Araly1|474093|fgenesh2_kg.1__4047__AT1G49580.1 3304 0.0
Ahg929797 jgi|Araly1|929797|scaffold_302254.1 1598 0.0
Ahg952604 jgi|Araly1|952604|scaffold_93900001.1 1203 0.0
> Ahg474093 jgi|Araly1|474093|fgenesh2_kg.1__4047__AT1G49580.1
Length=2138
Score = 3304 bits (1789), Expect = 0.0
Identities = 2021/2131 (95%), Gaps = 24/2131 (1%)
Strand=Plus/Plus
Query 39 gct-ctctttctcatgtga----tctctctcgctctctctttcttctctAAAAGCCAAAA 93
||| |||| |||||||||| |||||||| ||||||||||||||||||||| ||| ||
Sbjct 16 GCTCCTCTCTCTCATGTGATCTCTCTCTCTCTCTCTCTCTTTCTTCTCTAAAAACCAGAA 75
Query 94 CTTCGATGGCATTACTGTGATTTTCCTCATAAAGTAAGCTCCtttttttCGCCGGAGATT 153
||| |||||||||||||||||||| ||| ||||| || |||| ||||||||||||||||
Sbjct 76 CTTTGATGGCATTACTGTGATTTTTCTCTTAAAGCAATCTCC--TTTTTCGCCGGAGATT 133
Query 154 ATGGGAGGCTGTACTTCCAAACCCTCCACTTCCTCCGGCAGACCTAACCCTTTCGCTCCC 213
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 ATGGGAGGCTGTACCTCCAAACCCTCCACTTCCTCCGGCAGACCTAACCCTTTCGCTCCT 193
Query 214 GGTAATGACTATCCTCAAATTGACGATTTTGCCCCTGACCATCCCGGTAAATCACCAATT 273
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 194 GGCAATGACTATCCTCAAATTGACGATTTTGCCCCTGACCATCCCGGTAAATCACCACTT 253
Query 274 CCTACTCCTTCCGCCGCAAAGGCCTCTCCTTTCTTCCCCTTTTACACGCCGAGCCCTGCT 333
||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 254 CCTACCCCTTCCGCCGCAAAGTCCTCTCCTTTCTTTCCCTTTTACACGCCGAGCCCTGCT 313
Query 334 CGCCACCGCCGCAATAAGAGCCGCGACGTCGGC------GGAGGAGGAGAGAGCAAGAGT 387
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 314 CGCCACCGCCGTAATAAGAGCCGCGACGTCGGCGGAGGAGGAGGAGGAGAGAGTAAGAGC 373
Query 388 TTGACTAGCACGCCTCTCCGTCAATTACGCCGTGCGTTTCACCCTCCGTCTCCGGCGAAA 447
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTGACTAGCACGCCGCTTCGTCAATTACGCCGTGCGTTTCACCCTCCGTCTCCGGCGAAA 433
Query 448 CACATACGGGCGGCGCTACGGCGGAGGAAAGGGAAAAAGGAAGCTGCTTTATCTGG-GGT 506
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 434 CACATACGGGCGGCGCTACGGCGGAGGAAGGGGAAAAAGGAAGCTGCTTTATC-GGCGGC 492
Query 507 GACGCAGCTAACGACGGAGGTACCGCAGCGTGAGGAGGAAGAGGAAGTAGGGCTTGACAA 566
||||||||||||||||||| | |||| ||| ||||||||||||||| | |||||||||||
Sbjct 493 GACGCAGCTAACGACGGAGATCCCGCCGCGGGAGGAGGAAGAGGAATTGGGGCTTGACAA 552
Query 567 AAGATTTGGTTTTTCTAAAGAGTTTCACAGTAGAGTAGAGTTAGGGGAAGAAATTGGACG 626
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 553 AAGATTTGGTTTTTCTAAAGAGTTTCACAGTAGAGTAGAATTAGGGGAAGAGATTGGACG 612
Query 627 AGGACATTTTGGGTACACTTGCTCTGCTAAG-TTCAAGAAAGGAGAGCTCAAAGGTCAAG 685
||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 613 AGGGCATTTTGGGTACACTTGCTCTGCT-AGATTCAAGAAAGGAGAGCTCAAAGGTCAAA 671
Query 686 TGGTTGCTGTCAAAATCATCCCAAAATCGAAGATGACAACTGCAATTGCTATAGAAGATG 745
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 672 TGGTTGCTGTTAAAATCATCCCAAAATCTAAGATGACAACTGCAATTGCTATAGAAGATG 731
Query 746 TGAGAAGGGAAGTGAAAATTCTACAGGCTTTATCTGGACATAAGAATCTGGTACAATTCT 805
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 732 TGAGAAGGGAAGTGAAAATTCTACAGGCTTTATCTGGACATAAGAATCTGGTTCAATTCT 791
Query 806 ATGATGCATTTGAGGACAATGCAAACGTCTACATTGCAATGGAGCTATGTGAAGGTGGTG 865
||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 792 ATGATGCATTTGAGGACAATGCAAATGTCTACATTGCGATGGAGTTATGTGAAGGTGGTG 851
Query 866 AGCTTCTTGACAGAATACTAGCAAGGGGAGGGAAATACTCAGAGAATGACGCAAAACCAG 925
| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 852 AACTTCTGGACAGAATACTAGCAAGGGGAGGGAAATACTCGGAGAATGATGCAAAACCAG 911
Query 926 TGATTATACAAATTCTGAATGTGGTAGCTTTCTGTCATTTCCAAGGAGTTGTTCATCGAG 985
||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 912 TGATTATACAAATCCTGCATGTGGTAGCTTTTTGTCATCTCCAAGGAGTTGTTCATCGAG 971
Query 986 ACCTTAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAGAATTCTCAGCTTAAAGCGA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ACCTTAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAGAATTCTCAGCTTAAAGCGA 1031
Query 1046 TAGACTTTGGCTTATCAGACTTTGTCAGACCAGATGAGAGACTAAACGATATAGTGGGAA 1105
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1032 TAGACTTTGGCTTATCAGACTTTGTCAGACCAGATGAAAGACTCAACGATATAGTAGGAA 1091
Query 1106 GTGCATACTATGTAGCTCCCGAAGTTCTACACAGATCATATACAACAGAAGCGGATGTGT 1165
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GTGCGTACTACGTAGCTCCTGAAGTTCTACACAGATCATATACAACAGAAGCGGATGTGT 1151
Query 1166 GGAGCATCGGAGTCATAGCATACATTCTACTATGTGGTAGCCGTCCGTTTTGGGCAAGAA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GGAGCATCGGAGTCATAGCATACATTCTACTATGTGGTAGCCGTCCGTTTTGGGCAAGAA 1211
Query 1226 CTGAATCCGGAATTTTTAGAGCTGTTCTTAAAGCTGACCCGAGTTTCGATGAACCTCCTT 1285
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1212 CTGAATCCGGAATTTTCAGAGCGGTTCTTAAAGCTGACCCGAGTTTCGATGAACCTCCTT 1271
Query 1286 GGCCCTTCTTGTCTTCTGACGCTAAAGACTTTGTTAAGCGGTTATTGTTTAAGGATCCCC 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGCCCTTCTTGTCTTCTGACGCTAAAGACTTTGTTAAGCGGTTATTGTTTAAGGATCCCC 1331
Query 1346 GGCGAAGAATGTCAGCCTCCCAAGCCTTGATGCATCCTTGGATCCGAGCTTATAATACGG 1405
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1332 GGAGAAGAATGTCAGCCTCCCAAGCCTTGATGCATCCTTGGATCCGAGGTTATAATACGG 1391
Query 1406 ACATGAATATCCCTTTCGATATCTTGATCTTTAGGCAGATGAAGGCGTACTTGCGATCTT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 ACATGAATATCCCTTTCGATATCTTGATCTTTAGGCAGATGAAGGCGTACTTGCGATCTT 1451
Query 1466 CTTCATTACGCAAAGCTGCTTTGAGGGCGCTATCGAAGACGTTAATCAAGGATGAAATTC 1525
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1452 CTTCATTACGCAAAGCTGCTTTGAGGGCGCTGTCCAAGACGTTAATCAAGGATGAAATTC 1511
Query 1526 TTTACCTGAAAACTCAATTTTCTCTTCTCGCACCAAACAAAGATGGCCTAATCACAATGG 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TTTACCTGAAAACTCAATTTTCTCTTCTCGCACCAAACAAAGATGGCCTAATCACAATGG 1571
Query 1586 ATACCATTAGAATGGCACTTGCAAGCAATGCAACAGAAGCAATGAAAGAATCTCGGATCC 1645
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 ATACCATTAGATTGGCACTTGCAAGCAATGCAACAGAAGCAATGAAAGAATCTCGGATCC 1631
Query 1646 CAGAGTTTCTTGCTTTGCTAAATGGACTTCAATACAGAGGAATGGATTTTGAAGAGTTTT 1705
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1632 CAGAGTTTCTCGCTTTGCTAAATGGACTGCAATACAGAGGAATGGATTTCGAAGAGTTTT 1691
Query 1706 GTGCAGCTGCTATAAACGTTCATCAGCACGAGTCGCTTGATTGTTGGGAACAGAGCATTC 1765
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 GTGCAGCTGCCATAAACGTTCATCAGCACGAGTCGCTTGATTGTTGGGAACAGAGCATTC 1751
Query 1766 GACATGCTTATGAGCTTTTCGACAAGAATGGAAACCGAGCTATTGTCATCGAAGAACTTG 1825
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1752 GACATGCTTATGAGCTTTTCGACAAGAATGGAAACCGAGCTATTGTCATTGAAGAACTTG 1811
Query 1826 CCTCTGAACTTGGTGTTGGACCATCTATACCGGTACATTCAGTTCTACATGATTGGATCA 1885
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1812 CCTCTGAACTTGGTGTTGGACCATCTATACCCGTACATTCGGTTCTACATGATTGGATCA 1871
Query 1886 GACACACTGATGGAAAGCTTAGCTTCTTCGGGTTTGTTAAACTGTTACATGGAGTCTCTG 1945
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GACACACTGATGGGAAGCTAAGCTTCTTCGGGTTTGTTAAACTGTTACATGGAGTCTCTG 1931
Query 1946 TTCGAGCCTCGGGGAAAACTACCCGGTGAAGATAACGAAAACAAACATGACCTAAGCGAA 2005
||||| |||| | ||||||||| |||||||||||||||| | | ||||||| |||||||
Sbjct 1932 TTCGACCCTCAGCGAAAACTACACGGTGAAGATAACGAAG-CTAGCATGACCAAAGCGAA 1990
Query 2006 ATCG-TAAAAGAAGA-TGTCAAAACCTTTACTCTAAATCTTGGATTGGTATTGGAAATGT 2063
|||| ||||||| || |||||||| ||||||||| | ||||||||||| |||||||||||
Sbjct 1991 ATCGATAAAAGA-GAATGTCAAAATCTTTACTCTGATTCTTGGATTGGAATTGGAAATGT 2049
Query 2064 AATAGTTG-GTCAAAGACTGTACAACAAATGAAAAGTTTCTTACAAGAGCAATTCTaaaa 2122
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2050 AATAGTTTAGTCAAAGACTGTACAAGAAATGAAAAGTTTCTTACAAGAGCAATTCTAAGA 2109
Query 2123 aaaaGATTGTTGTAATAATATAGTAACCACA 2153
|||| | ||||||||||||||||||| |||
Sbjct 2110 AAAAC-T-GTTGTAATAATATAGTAACAACA 2138
> Ahg929797 jgi|Araly1|929797|scaffold_302254.1
Length=1853
Score = 1598 bits (865), Expect = 0.0
Identities = 1519/1825 (83%), Gaps = 84/1825 (5%)
Strand=Plus/Plus
Query 153 TATGGGAGGCTGTACTTCCAAACCCTCCACTTCCTCCGGCAGACCTAACCCTTTCGCTCC 212
||||||||| |||||||||||||||| | | ||||||| || |||||| |||| ||| ||
Sbjct 30 TATGGGAGGATGTACTTCCAAACCCT-C-C-TCCTCCGTCAAACCTAATCCTTACGCACC 86
Query 213 CGGTAATGA--C--TATCCT-CAAATTGACGATTTTGCCCCTGACCATCCCGGTAAATCA 267
| || || | | || | |||| |||||||| | |||||| ||||||||| ||||||
Sbjct 87 C---AAAGACGCGGT-TCTTCCAAA-TGACGATTCTACCCCTGCCCATCCCGGGAAATCA 141
Query 268 CCAATTCCTACTCCTTCCGCCGCAAAGGCCTCTCCTTTCTTCCCCTTTTACACGCCGAG- 326
|| ||||| || || |||||| |||||| |||||||| ||||| ||||||||||| ||
Sbjct 142 CCGGTTCCTTCTTCTCCCGCCGTAAAGGCTTCTCCTTTTTTCCCATTTTACACGCCTAGT 201
Query 327 CCCTGCTCGCCACCGCCGCAATAAGAGCCGCGACGTCGGCGGAGGAGG-AGAGAGCAAGA 385
||| ||||| |||||||| || |||||||| |||| || ||||| || |||||| ||||
Sbjct 202 CCC-GCTCGGCACCGCCGTAACAAGAGCCGTGACGGAGGAGGAGG-GGTAGAGAGTAAGA 259
Query 386 G-TTTGACTAGCACGCCTCTCCGTCAATTACGC-CGTGCGTTT-CACCCTCCGTCTCCGG 442
| || || ||||| || |||||||| | ||| ||||| ||| |||||||| || ||||
Sbjct 260 GCGTT-ACCAGCACTCCGCTCCGTCAGCT-CGCGCGTGC-TTTCCACCCTCCTTCACCGG 316
Query 443 CGAAACACATACGGGCGGCGCTACGGCGGAGGAAAGG-GAAAAAGGAAGCTGCTTTATCT 501
||||||| ||||||| | || ||||||||| |||| ||| ||||| |||||| | |
Sbjct 317 CGAAACATATACGGGATGTTCTGCGGCGGAGG-AAGGAGAAGAAGGAGGCTGCTCT-GCC 374
Query 502 GG-GGTGACGCAGCTAACGACGGAGGTACCGCAGCGTGAGGAGGAAGAGGAAGTAGGGCT 560
|| | || ||||| | |||||||| | | || | || | |||||| | ||||||||
Sbjct 375 GGCGACGAGGCAGC--A-GACGGAGG-A--GGAG-GAGA-G-GGAAGA-G--GTAGGGCT 422
Query 561 TGACAAAAGATTTGGTTTTTCTAAAGAGTTTCACAGTA-GAGTAGAGTTAGGGGAAGAAA 619
|| ||||||||||| || || || ||||| || |||| || | ||| |||||||||| |
Sbjct 423 GGATAAAAGATTTGGGTTCTCGAAGGAGTTACATAGTAGGA-TTGAGCTAGGGGAAGAGA 481
Query 620 TTGGACGAGGACATTTTGGGTACACTTGCTCTGCTAAGTTCAAGAAAGGAGAGCTCAAAG 679
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTGGGCGAGGGCATTTTGGGTACACTTGCTCTGCTAAGTTCAAGAAAGGAGAGCTCAAAG 541
Query 680 GTCAAGTGGTTGCTGTCAAAATCATCCCAAAATCGAAGATGACAACTGCAAT-TGCTATA 738
||| | ||||||||| ||| ||||||||||||| ||||||||| ||||||| | |||||
Sbjct 542 ATCACGAGGTTGCTGTTAAAGTCATCCCAAAATCTAAGATGACATCTGCAATAT-CTATA 600
Query 739 GAAGATGTGAGAAGGGAAGTGAAAATTCTACAGGCT-TTATCTGGACAT-AAGAATCTGG 796
|| ||||||||||| ||||||||||| || | || | |||||||||||| || ||| |||
Sbjct 601 GAGGATGTGAGAAGAGAAGTGAAAATACTGCGGG-TGTTATCTGGACATCAA-AATTTGG 658
Query 797 TACAATTCTATGATGCATTTGAGGACAATGCAAACGTCTACATTGCAATGGAGCTATGTG 856
|||||||||||||||| || ||||||||||| ||||| ||||| | |||||| ||||||
Sbjct 659 TACAATTCTATGATGCGTTCGAGGACAATGCCAACGTTTACATCGTTATGGAGTTATGTG 718
Query 857 AAGGTGGTGAGCTTCTTGACAGAATACTAGCAAGGGGAGGGAAATACTCAGA-GAATGAC 915
||||||||| || |||||||| ||||||||||||||||| |||||||| || || |||
Sbjct 719 GAGGTGGTGAACTACTTGACAGGATACTAGCAAGGGGAGGAAAATACTCTGAAGA-TGAT 777
Query 916 GCAAAACCAGTGATTATACAAATTCTGAATGTGGTAGCTTTCTGTCATTTCCAAGGAGTT 975
|||||| ||||| ||||||| || || || || ||||||||||||||| |||||||||||
Sbjct 778 GCAAAAGCAGTGCTTATACAGATCCTTAACGTTGTAGCTTTCTGTCATCTCCAAGGAGTT 837
Query 976 GTTCATCGAGACCTTAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAGAATTCTCAG 1035
||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 838 GTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAAAATTCTCTG 897
Query 1036 CTT-AAAG-CGATAGACTTTGGCTTATCAGACTTTGTCAGACCAGATGAGAGACTAAACG 1093
|| |||| | ||||| ||||||||||| || |||||||||||||| || ||| |||| |
Sbjct 898 -TTGAAAGTC-ATAGATTTTGGCTTATCGGATTTTGTCAGACCAGACGAAAGATTAAATG 955
Query 1094 ATATAGTGGGAAGTGCATACTATGTAGCTCCC-GAAGTTCTACACAGATCATATACAACA 1152
| ||||||||||||||||| || ||||| ||| ||||||||||||||||| ||||| ||
Sbjct 956 ACATAGTGGGAAGTGCATATTACGTAGC-CCCTGAAGTTCTACACAGATCTTATACCACG 1014
Query 1153 GAAGCGGATGTGTGGAGCATCGGAGTCATAGCATACATTCTACTATGTGGTAGCCGTCCG 1212
||||||||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||
Sbjct 1015 GAAGCGGATGTATGGAGCATAGGAGTAATAGCATACATTCTCCTATGTGGAAGCCGTCCT 1074
Query 1213 TTTTGGGCAAGAACTGAATCCGGAATTTTTAGAGCTGTTCTTAAAGCTGACCCGAGTTTC 1272
|||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1075 TTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAAAAGCTGATCCGAGTTTT 1134
Query 1273 GATGAACCTCCTTGGCCCTTC-TTGTC-TTCTGACGCTAAAGACTTTGTTAAGCGGTTAT 1330
||||||||||||||||| ||| || || || ||| || ||||| ||||||||| | ||||
Sbjct 1135 GATGAACCTCCTTGGCC-TTCGTTATCCTT-TGAGGCAAAAGATTTTGTTAAGAGATTAT 1192
Query 1331 TGTTTAAGGATCCC-CGGCGAAGAATGTCAGCCTCCCAAGCCTTGATGCATCCTTGGATC 1389
||| ||||| ||| ||| ||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1193 TGTACAAGGA-CCCTCGGAAAAGAATGACGGCCTCTCAAGCTTTGATGCATCCTTGGATT 1251
Query 1390 -CGAGCTTATAATACGGACATGAATATCCC-TTTCGATAT-CTTGATCTTTAGGCAGATG 1446
|| | |||||| | | | || |||||| ||| ||||| || |||||| | ||||||
Sbjct 1252 GCGGG-TTATAAGAAA-ATA-GA-TATCCCATTT-GATATTCT-GATCTTCAAGCAGATC 1305
Query 1447 AAGGCGTACTTGCGATCTTCTTCATTACGCAAAGCTGCTTTGAGGGCGCTATCGAAGACG 1506
|| || |||||| ||||||| || || |||||||||||||||| ||| || || |||||
Sbjct 1306 AAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGTCCAAGACA 1365
Query 1507 TTAATCAAGGATGAAATTCTTTACCTGAAAACTCAATTTTCTCTTCTC-GCACCAAACAA 1565
||||| | |||||| ||||||| |||||| | || ||| | || || ||||| |||||
Sbjct 1366 TTAATTACCGATGAACTTCTTTATCTGAAAGCGCAGTTTGCACT-CTTAGCACCCAACAA 1424
Query 1566 -AGATGGCCTAATCACAATGGATACCATTAGAATGGCACTTGCAAGCAA-TGCAACAGAA 1623
| ||||||| ||||| | |||| ||| ||| |||||||||| | ||| ||||||||||
Sbjct 1425 TA-ATGGCCTCATCACTTTAGATAGCATCAGACTGGCACTTGCTA-CAAATGCAACAGAA 1482
Query 1624 GCAATGAAAGAATCTCGGATCCCAGAGTTTCTTGCTTTGCTAAATGGACTTCAATACAGA 1683
|||||||| ||||| |||||||| || |||||||| ||| |||||||||||||||||| |
Sbjct 1483 GCAATGAAGGAATCACGGATCCCGGACTTTCTTGCGTTGTTAAATGGACTTCAATACAAA 1542
Query 1684 GGAATGGATTTTGAAGAGTTTTGTGCAGCTGCTATAAACGTTCATCAGCACGAGTCGCTT 1743
|| ||||||||||||||||||||||||||| | || | |||||||||||| ||||| |||
Sbjct 1543 GGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGTCTCTT 1602
Query 1744 GATTGTTGGGAACAGAGCATTCGACATGCTTATGAGCT-TTTCGACAA-GAATGGAAACC 1801
||||||||||| ||||||||||| |||||||||||||| ||| || || |||||||||||
Sbjct 1603 GATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAGCTATTT-GA-AATGAATGGAAACC 1660
Query 1802 GAGCTATTGTCATCGAAGAACTTGCCTCTGAACTTGGTGTTGGACCATCTATACCGGTAC 1861
||| ||| |||||||||||||| || || ||||||||||||||| |||| || ||||| |
Sbjct 1661 GAGTTATCGTCATCGAAGAACTCGCTTCCGAACTTGGTGTTGGATCATCGATCCCGGTCC 1720
Query 1862 ATTC-AGTTCTACATGATTGGATCAGACACACTGATGGAAAGCTTAGCTTCTTCGGGTTT 1920
|| | | |||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||||
Sbjct 1721 ATACCA-TTCTACATGACTGGATAAGACACACAGATGGGAAGCTGAGTTTCTT-GGGTTT 1778
Query 1921 -GTTAAACTGTTACATGGAGTCTCT 1944
|| |||||||| || || ||||||
Sbjct 1779 TGTCAAACTGTTGCACGGTGTCTCT 1803
> Ahg952604 jgi|Araly1|952604|scaffold_93900001.1
Length=1295
Score = 1203 bits (651), Expect = 0.0
Identities = 1055/1247 (85%), Gaps = 39/1247 (3%)
Strand=Plus/Plus
Query 716 AGATGACAACTGCAAT-TGCTATAGAAGATGTGAGAAGGGAAGTGAAAATTCTACAGGCT 774
|||||||| ||||||| | ||||||| ||||||||||| ||||||||||| || | |||
Sbjct 20 AGATGACATCTGCAATAT-CTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCG 78
Query 775 TTATCTGGACAT-AAGAATCTGGTACAATTCTATGATGCATTTGAGGACAATGCAAACGT 833
|||||||||||| || ||| ||||||||||||| ||||| || ||||||||||| |||||
Sbjct 79 TTATCTGGACATCAA-AATTTGGTACAATTCTACGATGCGTTCGAGGACAATGCCAACGT 137
Query 834 CTACATTGCAATGGAGCTATGTGAAGGTGGTGAGCTTCTTGACAGAATACTAGCAAGGGG 893
||||| | |||||| |||||| ||||||||| || |||||||| ||||||||||||||
Sbjct 138 TTACATCGTTATGGAGTTATGTGGAGGTGGTGAACTCCTTGACAGGATACTAGCAAGGGG 197
Query 894 AGGGAAATACTCAG-AGAATGACGCAAAACCAGTGATTATACAAATTCTGAATGTGGTAG 952
||| |||||||| | || |||| |||||| ||||| ||||||| || || || || ||||
Sbjct 198 AGGAAAATACTCTGAAG-ATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTTGTAG 256
Query 953 CTTTCTGTCATTTCCAAGGAGTTGTTCATCGAGACCTTAAACCAGAGAACTTCTTGTACA 1012
||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 257 CTTTCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACA 316
Query 1013 CTTCCAAGGAGGAGAATTCTCAGCTT-AAAG-CGATAGACTTTGGCTTATCAGACTTTGT 1070
||||||||||||||||||||| | || |||| | ||||| ||||||||||| || |||||
Sbjct 317 CTTCCAAGGAGGAGAATTCTCTG-TTGAAAGTC-ATAGATTTTGGCTTATCGGATTTTGT 374
Query 1071 CAGACCAGATGAGAGACTAAACGATATAGTGGGAAGTGCATACTATGTAGCTCCC-GAAG 1129
||||||||| || ||| |||| || ||||||||||||||||| || ||||| ||| ||||
Sbjct 375 CAGACCAGACGAAAGATTAAATGACATAGTGGGAAGTGCATATTACGTAGC-CCCTGAAG 433
Query 1130 TTCTACACAGATCATATACAACAGAAGCGGATGTGTGGAGCATCGGAGTCATAGCATACA 1189
||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 434 TTCTACACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTAATAGCATACG 493
Query 1190 TTCTACTATGTGGTAGCCGTCCGTTTTGGGCAAGAACTGAATCCGGAATTTTTAGAGCTG 1249
|||| |||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 494 TTCTCCTATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAG 553
Query 1250 TTCTTAAAGCTGACCCGAGTTTCGATGAACCTCCTTGGCCCTTC-TTGTC-TTCTGACGC 1307
|||| |||||||| |||||||| ||||||||||||||||| ||| || || || ||| ||
Sbjct 554 TTCTAAAAGCTGATCCGAGTTTTGATGAACCTCCTTGGCC-TTCGTTATCCTT-TGAGGC 611
Query 1308 TAAAGACTTTGTTAAGCGGTTATTGTTTAAGGATCCC-CGGCGAAGAATGTCAGCCTCCC 1366
||||| ||||||||| | ||||||| ||||| ||| ||| ||||||| ||||||| |
Sbjct 612 AAAAGATTTTGTTAAGAGATTATTGTACAAGGA-CCCTCGGAAAAGAATGACAGCCTCTC 670
Query 1367 AAGCCTTGATGCATCCTTGGATC-CGAGCTTATAATACGGACATGAATATCCC-TTTCGA 1424
|||| |||||||||||||||||| || | |||||| | | | || |||||| ||| ||
Sbjct 671 AAGCTTTGATGCATCCTTGGATCGCGGG-TTATAAGAAA-ATA-GA-TATCCCATTT-GA 725
Query 1425 TAT-CTTGATCTTTAGGCAGATGAAGGCGTACTTGCGATCTTCTTCATTACGCAAAGCTG 1483
||| || ||||| | |||||| || || |||||| ||||||| || || ||||||||||
Sbjct 726 TATTCTA-ATCTTCAAGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTG 784
Query 1484 CTTTGAGGGCGCTATCGAAGACGTTAATCAAGGATGAAATTCTTTACCTGAAAACTCAAT 1543
|||||| ||| || || ||||| ||||| | ||||| ||||||| |||||| | || |
Sbjct 785 CTTTGATGGCTCTGTCCAAGACATTAATTACCAATGAACTTCTTTATCTGAAAGCGCAGT 844
Query 1544 TTTCTCTTCTC-GCACCAAACAAAGATGGCCTAATCACAATGGATACCATTAGAA-TGGC 1601
|| | || || ||||| |||||| ||||||| ||||| | |||| ||| | || ||||
Sbjct 845 TTGCACT-CTTAGCACCCAACAAAAATGGCCTCATCACTTTAGATAGCATCA-AACTGGC 902
Query 1602 ACTTGCAAGCAA-TGCAACAGAAGCAATGAAAGAATCTCGGATCCCAGAGTTTCTTGCTT 1660
|||||| | ||| |||||||||||||||||| ||||| |||||||| || |||||||| |
Sbjct 903 ACTTGCTA-CAAATGCAACAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCGT 961
Query 1661 TGCTAAATGGACTTCAATACAGAGGAATGGATTTTGAAGAGTTTTGTGCAGCTGCTATAA 1720
|| |||||||||| ||||||| ||| ||||||||||||||||||||||||||| | || |
Sbjct 962 TGTTAAATGGACTCCAATACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTA 1021
Query 1721 ACGTTCATCAGCACGAGTCGCTTGATTGTTGGGAACAGAGCATTCGACATGCTTATGAGC 1780
|||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1022 GCGTTCATCAGCATGAGTCTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAAC 1081
Query 1781 TTTTCGACAA-GAATGGAAACCGAGCTATTGTCATCGAAGAACTTGCCTCTGAACTTGGT 1839
| ||||| || |||||||||||||| ||| ||||| ||||| || || ||||||||||||
Sbjct 1082 TATTCGA-AATGAATGGAAACCGAGTTATCGTCATTGAAGAGCTCGCTTCTGAACTTGGT 1140
Query 1840 GTTGGACCATCTATACCGGTACATTC-AGTTCTACATGATTGGATCAGACACACTGATGG 1898
|||||| ||||||| ||||| ||| | | |||||||||| ||||| |||||||| |||||
Sbjct 1141 GTTGGATCATCTATCCCGGTCCATACCA-TTCTACATGACTGGATAAGACACACAGATGG 1199
Query 1899 AAAGCTTAGCTTCTTCGGGTTT-GTTAAACTGTTACATGGAGTCTCT 1944
||||| || ||||| |||||| || |||||||| || || ||||||
Sbjct 1200 GAAGCTGAGTTTCTT-GGGTTTTGTCAAACTGTTGCACGGTGTCTCT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5