BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49590.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474094 jgi|Araly1|474094|fgenesh2_kg.1__4048__AT1G49590.1 1430 0.0
> Ahg474094 jgi|Araly1|474094|fgenesh2_kg.1__4048__AT1G49590.1
Length=1071
Score = 1430 bits (774), Expect = 0.0
Identities = 942/1020 (92%), Gaps = 24/1020 (2%)
Strand=Plus/Plus
Query 146 AGTTCCGGTAACTTCGTTTTCTGGGTTTAATTTTCGATTCAATCTTCATCTCCTTGATCC 205
|||| ||||||||||||||| ||||||||| || ||||||||||||| | | ||
Sbjct 67 AGTT-CGGTAACTTCGTTTTGTGGGTTTAAGCTTGGATTCAATCTTCA--T-C---AT-- 117
Query 206 ACAGCCATGACTGAGTATTGGGTAAGTCAAGGGAACAAATGGTGTGAATTCTGTAAGATA 265
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 118 -CAGCCATGACTGAGTATTGGGTAAGCCAAGGCAACAAATGGTGTGAATTCTGTAAGATC 176
Query 266 TGGATACAGAACAATCCAACAAGTATTAGAAACCATGACCTTGGTAAGCGTCACCGAGAA 325
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 TGGATTCAGAACAATCCAACAAGTATTAGAAACCATGAGCTTGGTAAGCGTCACCGAGAA 236
Query 326 TGTGTTGATAAGAAGCTCACTGATATGCGTGAGAGGAGTGCAGCCAAAGACAAAGAGCTC 385
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 TGTGTTGATAAGAAGCTCACTGATATGCGTGAGAAGAGTGCAGCCAAAGACAAAGAGCTC 296
Query 386 AAGAAAAACGAAAAACTGCTTCAACAGATCGAAGCTAAAGCAACTCGTAGCTATCAGAAA 445
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGAAAAACGAAAAATTGCTTCAACAGATCGAAGCTAAAGCAACTCGTAGCTATCAGAAA 356
Query 446 GATATTGCAACTGCTCAGCAAGTAGCTAAAGCAAACGGTGCACCAGAGGATGGTACATCC 505
||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 357 GATATAGCAACTGCTCAACAAGTAGCAAAAGCAAACGGTGCACCGGAGGATGGTACATCT 416
Query 506 GATTGGATGCTCGACAGTGCTTCAGGCTATTATTACAACCAGACCAATGGTCTGCACTAT 565
| |||| |||| ||||||||||| ||||||||||| ||||| || |||||||||||||||
Sbjct 417 GGTTGGGTGCTTGACAGTGCTTCGGGCTATTATTATAACCAAACTAATGGTCTGCACTAT 476
Query 566 GATTCACAGTCTGGATTCTATTACAGTGACTCAATAGGACATTGGGTGACACAAGACGAG 625
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 GATTCACAGTCTGGATTCTATTACAGTGACTCCATAGGACATTGGGTGACACAAGACGAG 536
Query 626 GCCTACGCTGCGGTTAAAACATCATCAGGAACCAAAGTACCTCTCGTGAAAAAGCCTGTA 685
|| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct 537 GCATACACTGCGGTTAAAACTTCATCAGGAACCAAAGTACCTCTCGTTAAAAAGCCTATA 596
Query 686 TC-TTCTTCAGGAGCTGGACCAAGTGTGGGGAAACCACCTGGCCGTCTTGTCACAGCTTC 744
| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 597 -CTTTCTTCAGAAGCTGGACCAAGTGTGGTGAAACCACCTGGTCGTCTTGTCACGGCTTC 655
Query 745 TTTAAATCCTAAAAGAGCTGTGAAAGGAGCGGCT-TCATCTGTTGATCTTGGCAACAACA 803
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 656 TTTAAATCCTAAAAGGGCTGTGAAAGGAGC-TATGTCATCTGTTGATCTTGGCAACAACA 714
Query 804 AGAGAAAGAGGCAAGATGAGAAACCGAAGAAAGTATCTGCAGAAGAGAAAGCTGCATTGA 863
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGAGAAAGAGACAAGATGAGAAACCGAAGAAAGTATCTGCAGAAGAGAAAGCTGCATTGA 774
Query 864 AGGCAAGAGAAGCTGCTAGGAAACGAGTTGAAGATAGAGAAAAACCATTGCTTGGTCTTT 923
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGCGAGAGAAGCTGCTAGGAAACGAGTTGAAGATAGAGAAAAACCATTGCTTGGTCTTT 834
Query 924 ACAATAGACCCTTTTGATGCATCATTGGCTTGATCCTATATGCAAAAGGGAGAGGCTAAG 983
||||||||||||| |||||||| ||||||||||| | | || ||||||||||||| |||
Sbjct 835 ACAATAGACCCTTCTGATGCATTGTTGGCTTGATC-T-TCTGTAAAAGGGAGAGGCCAAG 892
Query 984 CAGAGAAGAGTGATGA-T--TGAT----CTCATTGTGGCGGTTATTTCAGTTATTCCTAC 1036
|||||||||||||||| | |||| ||||| ||||| || ||||||||||||||||
Sbjct 893 CAGAGAAGAGTGATGACTGATGATTGATCTCATCGTGGCAGTGATTTCAGTTATTCCTAA 952
Query 1037 ATGACAGTTTATTCCAAAACTCTCTGGTATTTCTGGGAGCATTGGTCTTGTGTTCTTCTA 1096
||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 953 ATGAC-GTTTATTCCAAAACTCTCTAGTATTCCTGGGAGCATTGGTCTCGTGTTCTTCTA 1011
Query 1097 ACTGTTGTTCCAGTCATATCAGTTTCCTCTTTGTTGTACACACCTATTCAATTTTATAGT 1156
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1012 ACTGTTGTTCAAGTCATATCAGTTTCCTCTTTGTTGTAAACACCTATTCAATTTTTTAGT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5