BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49600.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474095 jgi|Araly1|474095|fgenesh2_kg.1__4049__AT1G49600.1 2625 0.0
Ahg479428 jgi|Araly1|479428|fgenesh2_kg.3__2129__AT3G19130.1 968 0.0
> Ahg474095 jgi|Araly1|474095|fgenesh2_kg.1__4049__AT1G49600.1
Length=1668
Score = 2625 bits (1421), Expect = 0.0
Identities = 1605/1688 (95%), Gaps = 36/1688 (2%)
Strand=Plus/Plus
Query 1 ATGCAGACACCAAACAACAACGGTTCAACAGATTCAGTGTTACCACCAACATCAGCCGGa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGACACCAAACAACAACGGTTCAACAGATTCAGTGTTACCACCAACATCAGCCGGA 60
Query 61 acaacaccaccaccaccgttgcagcaatcaacaccacca-c-c-g---cagcagcaacaa 114
||||||||||||||||||||||||||||||||||||||| | | | ||||| ||||||
Sbjct 61 ACAACACCACCACCACCGTTGCAGCAATCAACACCACCACCTCAGCAACAGCAACAACAA 120
Query 115 caacaacagtggcaacaacaacaacaaTGGATGGCTGCGATGCAGCAATACCCTGCAGCT 174
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CAACAACAGTGGCAACAACAACAACAATGGATGGCTGCTATGCAGCAATACCCTGCAGCT 180
Query 175 GCTATGGCTATGATGCAACAACAACAGATGATGATGTATCCTCACCCTCAATACGCTCCT 234
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GCTATGGCTATGATGCAACAACAACAGATGATGATGTATCCTCACCATCAATACGCTCCT 240
Query 235 TACAATCAAGCTGCTTATCAACAGCATCCTCAGTTTCAATA--C-GCTGCTTATCAACAG 291
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 241 TACAATCAAGCTGCTTATCAACAGCATCCTCAGTTTCAATACGCTGCTGCTTATCAACAG 300
Query 292 CAGCAGCAGCA--A-C--A-TCACCAG-AGTCAGCAGCAGCCACGCGGTGGATCTGGTGG 344
|| || ||||| | | | ||| ||| || | ||||||||||| ||||||||||||||
Sbjct 301 CAACAACAGCATCACCAGAGTCAGCAGCAG-AAACAGCAGCCACGTGGTGGATCTGGTGG 359
Query 345 TGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCT 404
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGATGATGTGAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCT 419
Query 405 CCATACCTGTTTCTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCA 464
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCATACCTGTTTTTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCA 479
Query 465 AACTTGTCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACTTGTCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGA 539
Query 525 AGCTCTTCAGAGCTTTAGCGGTGTTACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAA 584
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 AGCTCTTCAGAGCTTTAGCGGTGTAACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAA 599
Query 585 CTGGGCATCTTTCAGTACTGGTGAGAAAAGAGCATCAGAGAATGGTCCTGACCTATCCAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CTGGGCATCTTTCAGTACTGGTGAGAAAAGAGCATCAGAGAATGGTCCTGACCTATCAAT 659
Query 645 ATTTGTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGACTTTTGCTGG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTTGTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGACTTTTGCTGG 719
Query 705 TAGATATCCATCTGTCAAAGGTGCTAAAGTTGTGATTGATTCCAACACTGGGCGTTCCAA 764
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 720 TAGATATCCATCTGTCAAAGGTGCGAAAGTTGTGATCGATTCCAACACCGGGCGTTCCAA 779
Query 765 AGGTTACGGGTTTGTTAGGTTTGGTGATGAGAATGAGCGATCAAGAGCTATGACAGAAAT 824
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 780 AGGTTACGGGTTTGTCAGGTTTGGTGATGAGAATGAACGATCAAGGGCTATGACAGAAAT 839
Query 825 GAATGGTGCTTTCTGTTCAAGCAGGCAAATGCGTGTTGGTATCGCAACCCCGAAAAGGGC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 GAATGGTGCTTTCTGTTCAAGCAGGCAAATGCGTGTTGGTATCGCAACCCCGAAAAGAGC 899
Query 885 TGCTGCTTACGGCCAACAAAATGGTTCACAAGCTCTTACACTTGCTGGTGGACATGGAGG 944
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 900 TGCTGCTTACGGCCAACAAAATGGTTCACAAGCTCTCACACTGGCTGGTGGACATGGAGG 959
Query 945 GAATGGTTCAATGTCTGATGGAGAATCAAATAACTCAACAATATTTGTTGGCGGTCTTGA 1004
||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 960 AAATGGTTCACTGTCTGATGGAGAATCAAATAACTCAACAATATTTGTTGGTGGCCTTGA 1019
Query 1005 TGCTGATGTTACTGAAGAAGACCTCATGCAACCTTTTTCCGATTTTGGGGAGGTTGTTTC 1064
||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1020 TGCTGATGTTACTGAGGAAGACCTCATGCAACCTTTTTCCCAGTTTGGGGAAGTTGTTTC 1079
Query 1065 AGTGAAGATCCCAGTAGGGAAAGGATGTGGCTTTGTCCAATTTGCTAACAGGCAAAGTGC 1124
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 AGTGAAGATCCCAGTAGGAAAAGGATGTGGCTTTGTCCAATTTGCTAACAGGCAGAGTGC 1139
Query 1125 TGAGGAAGCCATCGGGAACTTGAACGGGACAGTCATTGGGAAGAACACTGTCCGCCTTTC 1184
||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1140 TGAAGAAGCCATTGGGAACTTGAACGGGACAGTCATCGGGAAAAACACTGTCCGCCTTTC 1199
Query 1185 ATGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACTCTGGCAACCAATGGAATGGAGG 1244
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 GTGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACACTGGCAACCAATGGAATGGAGG 1259
Query 1245 ATATTCAAGAGGTCAAGGATACAACAATGGATATGCCAATCAGGACTCAAACATGTACGC 1304
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 ATATTCAAGAGGTCAAGGTTACAACAATGGATATGCTAATCAGGACTCAAACATGTACGC 1319
Query 1305 TACTGCAGCGGCTGCAGTCCCGGGAGCTTCTTGAAAGTGTTGGTATGTCTCTATCATCAG 1364
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TACTGCAGCGGCTGCTGTCCCAGGAGCTTCTTGAAAGTGTTGGTATGTCTCTATCATCAG 1379
Query 1365 AAACCCTGTGAGTCCTGGACTTACGGGTATTGGGATAAAAACAAACCGTTGGGTGATCAA 1424
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 AAACCCCGTGAGTCCTGGACTTACGGGTATTGGGATAAAAACAAACCATTGGGTGATCAA 1439
Query 1425 AGTGATCCATCCGATGATAGTTGTTGGTTCAGAGGTTAGCTCGCACCATCGAAACTAAAA 1484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AGTGATCCATCCAATGATAGTTGTTGGTTCAGAGGTTAGCTCGCACCATCGAAACTAAAA 1499
Query 1485 CCTCTAGTGTCCAAAGAGGGTTTTGTATCCTGGATTTGAATCTTGCTTATCTTGCTGTCT 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CCTCTAGTGTCCAAAGAGGGTTTTGTATCCTGGATTTGAATCTTGCTTATCTTGCTGTCT 1559
Query 1545 CAGTCTCTGTCAAAATTTTGGGGTCGTCTGATACTTGAAttttttattttcagttttttt 1604
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1560 CAGTCTCTGTCAAAATTTTGGGGTTGTCTGATACTTGAATGTTT-ATTTTCAGTTTTTTT 1618
Query 1605 tttGAGTTAATTTGTCTTTGTTACTGAGACTTCCTCAAAGTCAGAGCTTGGTCCACAATA 1664
||| | || | |||||||||||||||||||||||| |||||||||||
Sbjct 1619 TTT---T------GT-T-----ACTGAGACTTCCTCAAAGTCAGAG---GGTCCACAATA 1660
Query 1665 AGTAATTT 1672
||||||||
Sbjct 1661 AGTAATTT 1668
> Ahg479428 jgi|Araly1|479428|fgenesh2_kg.3__2129__AT3G19130.1
Length=1713
Score = 968 bits (524), Expect = 0.0
Identities = 981/1190 (82%), Gaps = 77/1190 (6%)
Strand=Plus/Plus
Query 126 gcaacaacaacaacaaTGGATGGCTGCGATG-CA-GCAATACCCTGCAGCTGCTATGGCT 183
||| || || ||||| |||||||||||| | || |||||| || || || || || | |
Sbjct 322 GCAGCAGCAGCAACAGTGGATGGCTGCG--GCCATGCAATATCCAGCGGCGGCGAT-GAT 378
Query 184 -ATGATGCAACAACAACAGATGATGATGTATCCTCACCCTCAATACGCTCCTTACAATCA 242
|||||||| || ||||||||||||||||||||||| | ||||||| ||| || |||||
Sbjct 379 GATGATGCAGCAGCAACAGATGATGATGTATCCTCA--C-CAATACGTTCCGTATAATCA 435
Query 243 AGCTGCTTATCA--A-CAGCATCCTCAG-TT--TCAATAC-GCTGCTTATCAACAGCAGC 295
|| | ||||||| | || ||||||||| || |||||| | | ||||||||||||| |
Sbjct 436 AGGTCCTTATCAGCATCATCATCCTCAGCTTCACCAATACGGGT-CTTATCAACAGCACC 494
Query 296 AGCAGCAACATCACCAGAGTCAGCAGCAGCCACGCGGTGGATCTGGTGGTGATGATGTCA 355
|||||| | | || || || | | | || | ||||||| ||| ||||||||||
Sbjct 495 AGCAGC-A-A-CA-CA-AG-C--C-TC-TTGAC-C-GTGGATC---TGGAGATGATGTCA 539
Query 356 AGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA-TACCTG- 413
||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 540 AGACTCTCTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCACT-CTTGC 598
Query 414 TTTCTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCAAACTTGTCA 473
||| ||||||||| |||||||||||||||||||||||||| ||||||| |||| |||
Sbjct 599 TTT-TCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTCTCA 657
Query 474 ATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGAAGCTCTTCA 533
||| ||||| ||||||||| ||||||||||||||||| | |||||||| |||| ||||||
Sbjct 658 ATCAGAAGGGTATGGGTTTATTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCTTCA 717
Query 534 GAGCTTTAGCGGT--GTTACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAACTGGGCA 591
|| || ||| ||| | | | |||| ||| | || ||||| |||||| |||||||||||
Sbjct 718 GAACTATAGTGGTTCGGTG-A-TGCCAAACTCAGACCAGCCCTTCCGTATAAACTGGGCA 775
Query 592 TCTTTCAGTACTGGTGAGAAAAGAGCA-TCAGAGAATGGTCCTGACCTATCCATATTTGT 650
||||| ||||||||||| ||||||||| | || |||||||| || ||||||||||||||
Sbjct 776 TCTTTTAGTACTGGTGAAAAAAGAGCAGTG-GAAAATGGTCCAGATCTATCCATATTTGT 834
Query 651 TGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGAC-TTTTGCTGGTAGAT 709
|||||||||| |||||||||| | ||||||| | |||| |||||| |||| || |||||
Sbjct 835 TGGAGATTTGTCTCCAGATGTCACTGATGCTTTATTGCATGAGACCTTTTT-TGATAGAT 893
Query 710 ATCCATCTGTCAAAGGTGCTAAAGTTGTGATTGATTCCAACACTGGGCGTTCCAAAGGTT 769
|||| ||||||||| | || |||||||||||||||||||||||||| || ||||||||||
Sbjct 894 ATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACTGGCCGGTCCAAAGGTT 953
Query 770 ACGGGTTTGTTAGGTTTGGTGATGAGAATGAGCGATCAAGAGCTATGACAGAAATGAATG 829
|||| ||||| |||||||||||||| |||||| ||||||| ||| |||||||||||||||
Sbjct 954 ACGGTTTTGTGAGGTTTGGTGATGAAAATGAGAGATCAAGGGCTTTGACAGAAATGAATG 1013
Query 830 GTGCTTTCTGTTC-AAGCAGGCAAATGCGTGTTGGTATCGCAAC-CCCGAAAAGGGCTGC 887
| |||| |||||| || ||||||||||||||| ||| | ||||| ||| ||||| || |
Sbjct 1014 GAGCTTACTGTTCGAA-CAGGCAAATGCGTGTAGGTGTTGCAACTCCC-AAAAGAGC-GA 1070
Query 888 T-GCTTA-CGGCCAACAAAATGGTTCACAAGCTCTTACACTTGCTGGTGGACATGGAGGG 945
| ||| | | || | ||| || |||||||||||| | ||| ||||||||||||||||
Sbjct 1071 TTGCTAATCAGC-AGCAACATTCTTCACAAGCTCTGATACTGGCTGGTGGACATGGAGCA 1129
Query 946 AATGGTTC-A------ATG--TC----T--GATGGAGAATCAAATAACTCAACAATATTT 990
|||||||| | ||| || | ||||| ||||||| |||| |||||||||||
Sbjct 1130 AATGGTTCCATGGCTCATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTT 1189
Query 991 GTTGGCGGTC-TTGATGCTGATGTTACTGAAGAAGACCTCATG-CAACCTTTTTCCGATT 1048
|||||||| | |||| |||||||||||||| |||||||||| | |||||||||||| | |
Sbjct 1190 GTTGGCGG-CATTGACGCTGATGTTACTGACGAAGACCTCA-GACAACCTTTTTCCCAGT 1247
Query 1049 TTGGGGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGCTTTGTCCAATTTG 1108
|||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1248 TTGGCGAGGTTGTTTCAGTGAAGATACCAGTAGGCAAAGGATGTGGATTTGTCCAATTTG 1307
Query 1109 CTAACAGGCAA-AGTGCTGAGGAAGCCATCGGGAACTT-GAACGGGACAGTCATTGGGAA 1166
|| ||||| || |||||||| || || |||| || ||| ||| ||||||||||| || ||
Sbjct 1308 CTGACAGG-AAGAGTGCTGAAGATGCTATCGAGA-CTTTGAATGGGACAGTCATCGGCAA 1365
Query 1167 GAACACTGTCCGCCTTTCATGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACTCTGG 1226
|||||||||| | || || |||||| ||||||| ||||||||||||||| | ||||| ||
Sbjct 1366 GAACACTGTCAGACTCTCTTGGGGACGAAGCCCGAACAAACAGTGGAGAGGAGACTCAGG 1425
Query 1227 -CAACCAATGGAATGGAGGATATTCAAGAGGTCAAGGATACAACAATGGA 1275
|| | | |||||||||||||| ||| |||| ||||| ||||||| ||||
Sbjct 1426 ACAGC-AGTGGAATGGAGGATACTCACGAGGACAAGGTTACAACAGTGGA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5