BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49610.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314380 jgi|Araly1|314380|fgenesh1_pm.C_scaffold_1003160 1000 0.0
Ahg914056 jgi|Araly1|914056|Al_scaffold_0001_4310 425 3e-118
> Ahg314380 jgi|Araly1|314380|fgenesh1_pm.C_scaffold_1003160
Length=1062
Score = 1000 bits (541), Expect = 0.0
Identities = 924/1098 (84%), Gaps = 69/1098 (6%)
Strand=Plus/Plus
Query 1 ATGGCGCTCGACGGCGAGAACAGAGACGGTGGCTCCGCCTCCGTGAGAGTCCTCAAGC-A 59
|||||| || || |||| |||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1 ATGGCGGTCCACAGCGAAAACAGAGACGGTGGCTCCGCCTCCGTAAGAGTCCTCAA-CAA 59
Query 60 TTGCCT-CGAAGATGTAGACTCAATAAGCTCTTTGCCTGATGTGATCCTCCAAGAAAACC 118
| || ||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 60 CCG-CTCCGAAGATTTAGACACAATAAGCTCTTTGCCTGATGTGATCCTCCAACAAATTC 118
Query 119 TCTCCTTAATTCCGACCAAATTCGCCATAAGAACATCGGTCTTGTCCAAACGATGGAGGC 178
|||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 119 TCTCCTTAATCCCGACCAAATACGCCATAAGAACTTCCATCTTGTCCAAACGATGGAGGC 178
Query 179 ATGTTTGGTCCGAAACACCTTCCCTC-GACTTCGATGATTGCTATAAACTAGATGTTGAT 237
|||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||
Sbjct 179 ATGTTTGGTCCGAAACACCTTCTCTCTG-CTTCGATGATTGCTATAAAGTAGATGCTGAT 237
Query 238 TTTATAGACAAAACCCTAGCTCTCTACAGGGCTCGCAAGATTATGACTTTTGACCTCTGG 297
| |||||||||||||||||||| ||||| | ||||||||||||||| |||| | |||||
Sbjct 238 TCTATAGACAAAACCCTAGCTCACTACATGTCTCGCAAGATTATGAATTTTCAGCTCTGT 297
Query 298 ATCACCAACGGAATCAATCTTCCTTACATTGATGGATGGATCAAGTTCGCCATGTCCCGA 357
| |||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 298 ACCACCTACGGAGTCAATCTTCCTTACAATGA---ATGGATCAAGTTCGCCATGTCCCGA 354
Query 358 AACGTGGAGAATCTGTTTCTG-AGTTTCGATTTTCGGTTA--TATGA-TGTTCCTGATTA 413
||||| ||||||||||||||| | ||||| || | ||| ||||| | |||||||||
Sbjct 355 AACGTCGAGAATCTGTTTCTGGA-TTTCGGTTACC--TTAAGTATGAAT-TTCCTGATTC 410
Query 414 CTTGTACATCAATTCCTCT--G-T--CAA-GC--------AA---CTCT-------CCAT 449
|||||||||||| |||||| | | | || || |||| |||
Sbjct 411 CTTGTACATCAACTCCTCTAAGCTTTCTTTGCGTTGTTGCAAATTCTCTGATGAATCCAA 470
Query 450 TGCTAAGATTCTTTCTGGTTGTCCGATTATCGAAAGCTTAACATTGCATTTTTGTGATCA 509
|||||| ||| ||||||||||||||||| |||||||||||| | || | ||||||||| |
Sbjct 471 TGCTAATATTATTTCTGGTTGTCCGATTCTCGAAAGCTTAAAACTGGAATTTTGTGATGA 530
Query 510 ACTGATGGTTCTTGATCTCACCAAATCACCGAGTTTGAAAATATTGGAAATCCATGGTAG 569
||||| |||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 531 ACTGAGGGTTCTTGATCTCACCAAATCACCGAGTCTGAAAATATTAGAAATCG-T--TC- 586
Query 570 CATTTGGGCTAAAGTAGACATTTGCTTTTGCTCACTTAA-AGAGATAAAGGCTAATTTCC 628
| | ||| |||||||| |||||||| ||||| | | | | || ||| |||| |
Sbjct 587 C-------C-AAACTAGACATTCGCTTTTGCGCACTTGACA-ACCTGAATGCTGATTTTC 637
Query 629 TTCTCGACACGGTGCTCAAG-TGTCTTTACAAGTTGCAGAATGTAGACAAGCTTACCTTT 687
||| |||| |||||| ||| | ||| ||||||| ||||| |||||||||||||| |||
Sbjct 638 TTCAAGACATGGTGCTTAAGATA-CTTGACAAGTTACAGAACGTAGACAAGCTTACTTTT 696
Query 688 GGGGCAAACTTTCTTAAGGGCCGCGGTCTTCCTTTTCCGATGTTCAAGGCTAAAGCTTTG 747
|||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 697 GGGGAAAACTTTCTTAAGGTCCGCGGTGTTCCTTTTCCGATGTTCAAGGCTAAAGCTTTG 756
Query 748 ACTCTCGAGACAACGATCTCTAAATACGTTATTCCTGTACAGGGTGAGTATGATCCCACG 807
||||| ||||||| ||||||| |||| |||| ||||| | | | | || | | |
Sbjct 757 ACTCTTGAGACAATGATCTCTCAATATGTTACTCCTG-AT-G--T---T-TG--CA-A-G 804
Query 808 TACTTGCGTTGCATGAAGCTGGATCATTGCTCGATCTTTGCAAAGATTTCCCGTCGGAAT 867
|||||||| || |||| ||||||||||||| |||||||| || |||| || | |||||
Sbjct 805 TACTTGCGCGGCTTGAATCTGGATCATTGCTGGATCTTTGGGAATATTTTCCATTGGAAT 864
Query 868 GTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGAAATTA 927
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 865 GTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGCTTAAAAGGACAAAGACATTA 924
Query 928 GAGAAGATGGTCGTAAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTCGAAGAATTGCTT 987
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 925 GAGAAGATGGTCGTTAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTTGAAGAATTGCTT 984
Query 988 GAGATGGTTCCAATGCTTTCTCAAAACAACAATGTCTCCATTGTGCTTAGCTCAACCAAG 1047
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 985 GAGATGGTTCCAATGCTTTCTCGAAACAACAACGTCTCCATTGTGCTTAGCTCAACCAAT 1044
Query 1048 CCGAGACAGAGTCTTTAG 1065
|||||||| ||| |||||
Sbjct 1045 CCGAGACATAGTGTTTAG 1062
> Ahg914056 jgi|Araly1|914056|Al_scaffold_0001_4310
Length=738
Score = 425 bits (230), Expect = 3e-118
Identities = 338/389 (87%), Gaps = 11/389 (3%)
Strand=Plus/Plus
Query 1 ATGGCGCTCGACGGCGAGAACAGAGACGGTGGCTCCGCCTCCGTGAGAGTCCTCAAGCAT 60
|||||| | ||||||| ||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 1 ATGGCGGACCACGGCGAAAACAGAGACGGTGCCTCCGCCTCCGTAAGAGTCCTCAACCA- 59
Query 61 TGC-CT-CGAAGATGTAGACTCAATAAGCTCTTTGCCTGATGTGATCCTCCAAGAAAACC 118
| || ||||||| ||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 60 -CCACTCCGAAGATTTAGACACAATAAGCTCTTTGCCTGATGTGATCCTCCATCAAATTC 118
Query 119 TCTCCTTAATTCCGACCAAATTCGCCATAAGAACATCGGTCTTGTCCAAACGATGGAGGC 178
|||||||| ||| |||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 119 TCTCCTTATTTCAGACCAAATACGCCATAAGAACTTCCATCTTGTCCAAACGATGGAGGT 178
Query 179 ATGTTTGGTCCGAAACACCTTCCCTCGACTTCGATGATTGCTATAAACTAGATGTTGATT 238
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 179 ATGTTTGGTTCGAAACACCTTCTCTCTACTTCGATGATTGCTATAAACTAGATGCTGATT 238
Query 239 TTATAGACAAAACCCTAGCTCTCTACAGGGCTCGCAAGATTATGACTTTTGACCTCTG-G 297
| |||| |||||||||| || |||||||||||||||||||||||||||| | ||||| |
Sbjct 239 CTGTAGAAAAAACCCTAGATCACTACAGGGCTCGCAAGATTATGACTTTTCAGCTCTGTG 298
Query 298 ATCACCA-ACGGAATCAATCTTCCTTACATTGATGGATGGATCAAGTTCGCCATGTCCCG 356
|| || || | || |||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 299 -CCA-CATCCGTAGTCGATCTTCCTTACA---ATGAATGGATCGAGTTCGCCATGTCCCG 353
Query 357 AAACGTGGAGAATCTGTTTCTGAGTTTCG 385
||||||||||||||||||||||| |||||
Sbjct 354 AAACGTGGAGAATCTGTTTCTGAATTTCG 382
Score = 298 bits (161), Expect = 6e-80
Identities = 210/234 (90%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 808 TACTTGCGTTGCATGAAGCTGGATCATTGCTCGATCTTT-GCAAAGATTTCCCGTCGGAA 866
|||||| || || |||| ||| |||| |||| | ||||| | || | ||| || | ||||
Sbjct 484 TACTTGTGTGGCTTGAATCTGAATCACTGCTGGGTCTTTGGGAATG-TTTTCCATTGGAA 542
Query 867 TGTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGAAATT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 543 TGTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGGCATT 602
Query 927 AGAGAAGATGGTCGTAAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTCGAAGAATTGCT 986
|||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 603 AGAGAAAATGGTCGTAAGGTTGGAAAGTTACCTTGATGGAAGAGATTTTGAAGAATTGCT 662
Query 987 TGAGATGGTTCCAATGCTTTCTCAAAACAACAATGTCTCCATTGTGCTTAGCTC 1040
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct 663 TGAGATGGTTCCCATGCTTTCTCAAAACAACAATGTCTCCATTGAGTTTAGCTC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5