BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49620.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474096 jgi|Araly1|474096|fgenesh2_kg.1__4050__AT1G49620.1 913 0.0
Ahg947731 jgi|Araly1|947731|scaffold_703960.1 176 2e-43
> Ahg474096 jgi|Araly1|474096|fgenesh2_kg.1__4050__AT1G49620.1
Length=590
Score = 913 bits (494), Expect = 0.0
Identities = 564/596 (95%), Gaps = 12/596 (2%)
Strand=Plus/Plus
Query 1 ATGAGCGAAACAAAACCCAAGAGAGATTCTGAGTACGAAGGATCAAACATCAAGAGGATG 60
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGCGAAACAAAATCCAAGAGAGATTCTGATTACGAAGGATCAAACATCAAGAGGATG 60
Query 61 AGACTCGATGATGATGATGACGTTTTACGCTCACCGACGAGAACtctttcttcttcttcc 120
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGACTCGATGATGATGATGGCGTTTTACTCTCACCGACGAGAACTCTTTCTTCTTCTTCC 120
Query 121 tcttcttctctGGCTTACTCGGTTTCAGATTCCGGAGGTTTCTGCTCCGTCGCGTTATCT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCTTCTTCTCTGGCTTACTCGGTTTCAGATTCCGGAGGTTTTTGCTCCGTCGCGTTATCT 180
Query 181 GAAGAAGAAGACGATCATCTAAGCTCAAG---CATCAGCTCTGGTTGTTCCAGCAGCGAA 237
||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 181 GAAGAAGAATACGATCATCGAAGCTCAAGCATCATCAGCTCTGGTTGTTCTAGCAGCGAA 240
Query 238 ACTAACGAAATCGCTACTCGTCTTCCATTTTCAGATCTGGAGGCTCATGAAATCTCCGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTAACGAAATCGCTACTCGTCTTCCATTTTCAGATCTGGAGGCTCATGAAATCTCCGAA 300
Query 298 ACCGAAATCTCAACGTTACTCACCAACAA---TTTCAGGAAACAGGGAATTTCATCAAGC 354
|||||||||||||||||| |||||||||| |||||| |||||||||| | ||| ||||
Sbjct 301 ACCGAAATCTCAACGTTAATCACCAACAACAATTTCAGCAAACAGGGAAGTCCATTAAGC 360
Query 355 GAGAATCTGGGAGAAACAGCAGAAATGGACTCGGCGACGACGgagatgagagatcagaga 414
|||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 361 GAGAATCTGGGAGAAAGAGCTGAAATGGACTCGGCGACGACGGAGAGGAGAGATCAGAGA 420
Query 415 aagacggagaagaagaagaagaTGGAAAAATCACCGACGCAGGCAGAGCTTGATGACTTT 474
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 421 AAGACGGAGAAGAAGA------TGGAAAAAGCACCGACGCAGGCAGAGCTTGATGACTTT 474
Query 475 TTCTCGGCGGCGGAGAGATACGAACAGAAACGATTCACAGAAAAGTACAACTACGACATC 534
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTCTCGGCGGCCGAGAGATTCGAACAGAAACGATTCACAGAAAAGTACAACTACGACATC 534
Query 535 GTCAATGATACGCCGCTTGAAGGTCGGTACCAGTGGGTTAGTCTGAAACCTTAGAA 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 GTCAATGATACGCCGCTTGAAGGTCGGTACCAGTGGGTTAGTCTCAAACCTTAGAA 590
> Ahg947731 jgi|Araly1|947731|scaffold_703960.1
Length=199
Score = 176 bits (95), Expect = 2e-43
Identities = 122/134 (91%), Gaps = 6/134 (4%)
Strand=Plus/Minus
Query 387 GGCGACGACGgagatgagagatcagagaaagacggagaagaagaagaagaTGGAAAAATC 446
|||||||||||||| ||||||||| |||||||| | | |||| | |||||||||| |
Sbjct 168 GGCGACGACGGAGAGGAGAGATCAAAGAAAGAC---G--G-AGAATATGATGGAAAAAGC 115
Query 447 ACCGACGCAGGCAGAGCTTGATGACTTTTTCTCGGCGGCGGAGAGATACGAACAGAAACG 506
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 114 ACCGACGCAGGCAGAGCTTGATGACTTTTTCTCGGCGGCGGAGAGATTCGAACAGAAACG 55
Query 507 ATTCACAGAAAAGT 520
||||||||||||||
Sbjct 54 ATTCACAGAAAAGT 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5