BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49640.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923385 jgi|Araly1|923385|scaffold_104666.1 1334 0.0
Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1 551 5e-156
> Ahg923385 jgi|Araly1|923385|scaffold_104666.1
Length=992
Score = 1334 bits (722), Expect = 0.0
Identities = 907/996 (91%), Gaps = 13/996 (1%)
Strand=Plus/Plus
Query 66 CACTCTCTTTTCCAAAGAAGATGGAATCTGATCTAACCACAGAGCATCATCTACCATTCA 125
|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 CACTCTTTTTTCCAAAGAAGATGGAATCTGATAGAACAACAGAGCATCATCTACCATTCA 60
Query 126 TCCGAATTCAT-AAGAACGGCCGAGTCGAGCGGCTTAGCGGCAACGACATCAAACCAACG 184
|||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 61 TCCGGTTTC-TAAAGAACGGCCGGGTCGAGCGACTTAGCGGCAACGACATCAAACCTTCG 119
Query 185 TCTTTAAACCCACAAAACGATGTCGTTTCGAAAGACGTCATGTACTCATCGGACCACAAC 244
|||||||||||||||||||| |||||||| ||||||||| | |||||| |||| ||||||
Sbjct 120 TCTTTAAACCCACAAAACGACGTCGTTTCAAAAGACGTCGTATACTCACCGGAGCACAAC 179
Query 245 CTCTCCGTCCGTATGTTTCTCCCCAACAAATCTAGAAAACTCGACACCGCCGGTAACAAA 304
|||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| |||
Sbjct 180 CTCTCCGTTCGTATGTTTCTCCCCAACAAATCTACAAAACTCGCCACCGCGGGTAA-AAA 238
Query 305 A-TACCTCTACTCATCTACTTTCACGGCGGAGCTTACATCATACAATCTCCTTTCTCTCC 363
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACTACCTCTACTTATCTACTTTCACGGCGGAGCTTACATCATACAATCTCCTTTCTCTCC 298
Query 364 GGTTTACCATAACTACCTCACGGAGGTTGTTATAACCGCTAACTGCCTAGCCGTGTCGGT 423
|||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 299 GGTTTACCATAACTACATCACGGAGGTTGTTAAAACCGCTAACTGCCTCGCCGTGTCGGT 358
Query 424 TCAGTACCGTCTTGCGCCAGAGCATCCGGTTCCGGCGGCTTACGACGATTCATGGTCTGC 483
||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct 359 TCAATACCGTCTTGCGCCAGAGCATCCAGTTCCGGCGGCTTATGATGATTCATGGTCGGC 418
Query 484 GATTCAGTGGATCTTTTCTCATTCTGATGATTGGATTAATGAATACGCTGATTTCGACAG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 TATTCAGTGGATCTTTTCTCATTCTGATGATTGGATTAATGAATACGCCGATTTCGACAG 478
Query 544 AGTTTTTATCGCCGGAGATAGTGCCGGAGCCAATATATCGCATCACATGGGAATAAGAGC 603
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 479 AGTTTTTATCGCCGGAGATAGCGCCGGAGCCAATATATCACATCACATGGGAATAAGAGC 538
Query 604 TGGTAAGGAGAAGCTTA-GCCCTACAATCAAAGGGATTGTTATGGTGCATCCAGGTTTTT 662
|||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 539 TGGTGAGGAGAAGCTTAAGCC-TGGAATCAAAGGGATTGTTATGGTGCATCCAGGTTTTT 597
Query 663 GGGGGAAAGAACCGATCGACGAACACGATGTACAAGACGGAGAAGTCAGAAACAAGA-TC 721
|||||||||| |||||||||| ||||||||| |||||| ||||| | || | | || ||
Sbjct 598 GGGGGAAAGATCCGATCGACGTACACGATGTGCAAGACAGAGAAATAAGGAGTA-GAATC 656
Query 722 GCATATATTTGGGAAAATATCGTTAGCCCGAATAGTGTTGATGGAGTGAATGATCCGTGG 781
|| ||||||||||||| ||||| ||||| | |||||||||||| | |||||||||||||
Sbjct 657 ACACATATTTGGGAAAAGATCGTGAGCCCTAGTAGTGTTGATGGGGCGAATGATCCGTGG 716
Query 782 TTTAATGTTGTTGGATCCGGATCGGATGTTTCCGAGATGGGATGTGAAAAGGTTTTGGTT 841
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 717 TTAAATGTGGTTGGATCCGGGTCGGATGTTTCCGAGATGGGATGTGAGAAGGTTTTGGTT 776
Query 842 GCGGTTGCCGGAAAAGATGTGTTTTGGCGGCAAGGATTGGCTTATGCGGCGAAGCTGGAG 901
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 777 GCGGTGGCCGGGAAAGATGTGTTTTGGCGGCAAGGATTGGCTTACGCGGCGAAGTTGGAG 836
Query 902 AAGAGTCAGTGGAAAGGAAGTGTTGAGGTGATTGAGGAAGAAGAGGAAGGACACTGCTTC 961
|||||| |||||||||||| || || ||| | || || |||||||||||||||||||||
Sbjct 837 AAGAGTGAGTGGAAAGGAACCGTGGAAGTGGTGGAAGACGAAGAGGAAGGACACTGCTTC 896
Query 962 CATCTCCATAACCATAATTCTCAAAATGCTTCGAAATTGATGCAG-AAGTTTTTGGAGTT 1020
||||||||||||| || ||||||||| ||||||||||||||| || || ||| |||||||
Sbjct 897 CATCTCCATAACCCTATTTCTCAAAACGCTTCGAAATTGATG-AGGAAATTTGTGGAGTT 955
Query 1021 TATCAT---AAGTTGAATCTTGATGCTCAAGTATGG 1053
|||||| |||||||||||||||||||||| ||||
Sbjct 956 TATCATCTTAAGTTGAATCTTGATGCTCAAGCATGG 991
> Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1
Length=1030
Score = 551 bits (298), Expect = 5e-156
Identities = 731/933 (78%), Gaps = 58/933 (6%)
Strand=Plus/Plus
Query 137 AAGAACGGCCGAGTCGAGCGGCTTA-GCGGCAACGACATCAAACCAACGTCTTTA-AACC 194
||| |||| || ||||| || || | | |||| ||| | || || ||||| || | ||
Sbjct 73 AAG-ACGGTCGCGTCGAACGACTCATG-GGCACCGAAACCATCCCTGCGTCTCTAGATCC 130
Query 195 CACAAAACGATGTCGTTTCGAAAGACGTCATGTACTCATCGGACCACAACCTCTCCGTCC 254
|| | |||| |||||||| |||||||| || |||||| ||||||| ||||||||||| |
Sbjct 131 AAC-ACACGACGTCGTTTCAAAAGACGTTATATACTCACCGGACCATAACCTCTCCGTTC 189
Query 255 GTATGTTTCTCCC-CAACAAATCTAGAAAACTCGACACCGCCGGT-AACAAAATACCTCT 312
|| | || ||||| | ||||||| | |||||| |||||||||| || ||| | |||||
Sbjct 190 GTCTCTTCCTCCCTC-ACAAATCCACAAAACT---CACCGCCGGTGAA-AAACTCCCTCT 244
Query 313 ACTCATCTACTTTCACGGCGGAGCTTACATCATAC-AATCTCCTTTCTCTCCGGTTTACC 371
||| |||||| | ||||||||||||| ||||| | |||| ||||||||||| | ||||
Sbjct 245 ACTTATCTACATCCACGGCGGAGCTTGGATCAT-CGAATCACCTTTCTCTCCAATCTACC 303
Query 372 ATAACTACCTCACGGAGGTTGTTATAA-CCGCTAACTGCCTAGCCGTGTCGGTTCAGTAC 430
| || |||||||| || ||||| | || ||||||||||||| ||||| ||||||||||||
Sbjct 304 ACAATTACCTCACTGAAGTTGTCA-AATCCGCTAACTGCCTCGCCGTCTCGGTTCAGTAC 362
Query 431 CGTCTTGCGCCAG-AGCATCCGGTTCCGGCGGCTTACGACGATTCATGGTCTGCGATTCA 489
|||| ||| || | || ||||||||||||| | || || ||| ||||||| ||||||||
Sbjct 363 CGTCGTGCACCGGAAG-ATCCGGTTCCGGCTTCGTATGAAGATGCATGGTCCGCGATTCA 421
Query 490 GTGGATCTTTTCTCATTCT----GA----------T-GATTGGATTAATGAATACGCTGA 534
|||||||| ||||||||| || | ||||||||||| || |||| ||
Sbjct 422 ATGGATCTTCTCTCATTCTAACGGATCTGGTCCTGTGGATTGGATTAACAAACACGCCGA 481
Query 535 TTTCGACAGAGTTTTTATCGCCGGAGATAGTGCCGGAGCCAATATATCGCATCACATGG- 593
|||||| | ||||||| ||||||||||||| ||||| | || ||||| ||||||||||
Sbjct 482 TTTCGATAAAGTTTTTCTCGCCGGAGATAGCGCCGGCGGTAACATATCACATCACATGGC 541
Query 594 GAAT-AAGAGCTGGT-AAGGAGAAG-CT-TAGCCCT-ACAATCAAAGGGATTGTTATGGT 648
| || || ||||||| || |||||| | ||| || | ||||||||| |||| | | ||
Sbjct 542 G-ATGAA-AGCTGGTGAA-GAGAAGAATCTAGATCTGAAAATCAAAGGTATTGGTGTTGT 598
Query 649 GCATCCAGGTTTTTGGGGGAA-AGAACCGATCGACGAACACGATGTACAAGACGGAGAAG 707
||||||| ||| | |||||| ||| ||| | || ||| ||||||| ||||| ||||
Sbjct 599 TCATCCAGCTTTCT-GGGGAACAGATCCGGTTGATGAATACGATGTTCAAGATAAAGAA- 656
Query 708 TC-AGAAACAAG-ATCGCATATATTTGGGAAAATATCGTTAGCCCGAATAGTGTTGATGG 765
| |||| | | ||||| | ||||||| || ||||| || |||||||||||| | ||
Sbjct 657 ACGAGAATC-GGAATCGCGGACGTTTGGGAGAAGATCGTGAGTCCGAATAGTGTTAACGG 715
Query 766 AGTGAATGATCCGTGGTTTAATGTTGTTGGATCCGGATCGGATGTTTCCGAGA-TGGGAT 824
| | ||||||||| |||||| || |||||||| |||||| |||| | || ||||||
Sbjct 716 AACGGATGATCCGTTGTTTAACGTAAACGGATCCGGGTCGGATTTTTCTG-GATTGGGAT 774
Query 825 GTGAAAAGGTTTTGGTTGCGGTTGCCGGAAAAGATGTGTTTTG-GCGGCAAGGATTGGCT 883
|||| ||||||||||||||||| || |||||||||||| |||| | ||||||| ||||||
Sbjct 775 GTGAGAAGGTTTTGGTTGCGGTGGCTGGAAAAGATGTG-TTTGTGAGGCAAGGTTTGGCT 833
Query 884 TATGCGGCGAAGCTGGAGAAGAGTCAGTGGAAAGGAAGTGTTGAGGTGATTGAGGAAGAA 943
|||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||
Sbjct 834 TATGCGGCGAAGCTGGAGAAGAGTGAGTGGAAAGGAACTGTGGAGGTGGTTGAGGAAGAA 893
Query 944 GAG-GAAGGACAC-TGCTTCCATCTCCATAA-CCATAATTCTCAAAATGCTTCGAAATTG 1000
| | |||||||| || ||| || | | || || ||||||| | || |||| || |||
Sbjct 894 G-GTGAAGGACATGTGTTTC-ATTTGGAGAAACC-TAATTCTGATAAGGCTTTGAGATTC 950
Query 1001 ATGCAGAAGTTTTTGGAGTTTATCATAAGTTGA 1033
|| |||||||| | |||||||| || |||||
Sbjct 951 TTGAAGAAGTTTGTCGAGTTTATTATTGGTTGA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5