BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49650.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923386 jgi|Araly1|923386|scaffold_104667.1 1644 0.0
Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1 848 0.0
Ahg923385 jgi|Araly1|923385|scaffold_104666.1 717 0.0
> Ahg923386 jgi|Araly1|923386|scaffold_104667.1
Length=1186
Score = 1644 bits (890), Expect = 0.0
Identities = 1074/1163 (92%), Gaps = 12/1163 (1%)
Strand=Plus/Plus
Query 131 AAAATATTCCGGGAACCATGCTCCGAAGAATCACTTGTTCTTCTTCACTTGCTTCACCCT 190
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 4 AAAATATTCCGGTAACCATGCTCCGAAGAATCACTTGTTCCTCTTCACTCGCTTCACCCT 63
Query 191 CTCTCTTCCTCCGCTTCTTTCGCCAACT-CCCTCGCTCTTACTCCTCACCGACCACCATC 249
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 64 CTCTCTTCCTCCGCTTCTTTCGCC-AGTCCCCTCGCTCTTACTCCTCACCGACCACCATC 122
Query 250 GCCGTCTCAGGCCGCAACATTCGCCGACTATCAACTCCAACCACTCTTCGTTGCATTTGT 309
||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 123 ACCGTCTCGGGCCGCAACATTCGCCGACTACCCACTCCGACCACTCTTCGTTGCATTTGT 182
Query 310 TCACACTCTTCATCTGAAATCATCTCCGAGCATCCTCCGTTCGTCAGGGTTTACAAAGAC 369
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 183 TCACACTCTTCGTCCGAAATCATCTCCGAGCACCCTCCGTTCATCCGGGTTTACAAAGAC 242
Query 370 GGTCGTATCGAACGTCTTTCCGGCACCGAAACAGTCCCGGCTTCTCTAAACCCACGAAAC 429
|||||||||||||||||||| ||||||||||| | |||||| ||||||| ||| | ||||
Sbjct 243 GGTCGTATCGAACGTCTTTCGGGCACCGAAACCGCCCCGGCATCTCTAAGCCCCCAAAAC 302
Query 430 GACGTCGTTTCAAAAGACGTTGTCTACTCACCGGGGCATAACCTCTCCGTTCGTCTCTTT 489
|||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 303 GACGTCGTGTCAAAAGACGTCGTGTACTCACCGGAGCATAACCTCTCCGTTCGTCTCTTT 362
Query 490 CTCCCTCACAAATCAACACAACTCGCCGCCGGTAACAAACTCCCTCTACTTATCTACTTC 549
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 363 CTCCCTCATAAATCCACACAACTCGCCGCCGGTGACAAACTCCCTCTACTTATCTACTTC 422
Query 550 CACGGCGGAGCTTGGATAAACGAATCCCCTTTCTCCCCAATCTACCACAATTTCCTCACG 609
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 423 CACGGCGGAGCTTGGACAATCGAGTCCCCTTTCTCCCCAATCTACCACAATTTCCTCACG 482
Query 610 GAGGTAGTTAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAATACCGCCGTGCACCGGAA 669
||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 483 GAGGTGGTCAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAATACCGACGTGCGCCGGAA 542
Query 670 GATCCGGTTCCGGCTGCCTATGAAGATACATGGTCTGCTATTCAATGGATTTTCTCACAT 729
|||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||
Sbjct 543 GATCCGGTTCCGGCGGCGTATGAAGATACATGGTCCGCGATTCAATGGATTTTCTCACAT 602
Query 730 TCCTGT-GGATCTGGTGAAGAAGATTGGATTAACAAATACGCTGATTTCGAA-AGAGTTT 787
||| | ||||||||| |||||||||||||||||||||||| || ||| || |||||||
Sbjct 603 TCC-GACGGATCTGGTCCAGAAGATTGGATTAACAAATACGCCGACTTC-AACAGAGTTT 660
Query 788 TTCTCGCCGGAGATAGTGCCGGTGGTAATATATCTCATCACATGGCTATGAGAGCTGGTA 847
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 661 TTCTCGCCGGAGATAGCGCCGGAGGTAACATATCTCATCACATGGCTATGAGAGCTGGTA 720
Query 848 AAGAGAAGCTTAAGCCTAGAATCAAAGGGACTGTGATTGTGCATCCAGCGATTTGGGGGA 907
|||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 721 AAGAGAAGCTCAAGCCTAGAATCAAAGGGACAGTGATAGTGCATCCAGCTATTTGGGGAA 780
Query 908 AAGATCCGGTCGATGAGCACGATGTGCAAGATAGAGAGATCAGA-GACGGAGTTGCAGAA 966
|||||||||||||||| |||||||||||||| | |||||||||| | |||||||||| ||
Sbjct 781 AAGATCCGGTCGATGAACACGATGTGCAAGACAAAGAGATCAGAAG-CGGAGTTGCACAA 839
Query 967 GTTTGGGAGAAAATTGTGAGTCCGAATAGTGTTGATGGAGCGGATGATCCGTGGTTTAAT 1026
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 GTTTGGGAGAAGATTGTGAGTCCGAATAGTGTTGATGGAGCGGATGACCCGTGGTTTAAT 899
Query 1027 GTGGTTGGATCCGGGTCGAATTTTTCCGGGATGGGATGTGACAAGGTTTTGGTTGAGGTG 1086
|| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 900 GTAGTTGGATCCGGGTCGGATTTTTCCGAGATGGGATGTGAGAAGGTTTTGGTTGCGGTG 959
Query 1087 GCTGGGAAAGATGTGTTTTGGCGGCAAGGATTAGCTTACGCGGCGAAGCTAAAGAAGAGT 1146
||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 960 GCTGGAAAAGATCTGTTTTGGCGGCAAGGATTAGCTTATGCGGCGAAGCTGAAGAAGAGT 1019
Query 1147 GGGTGGAAAGGAGA-GGTGGAGGTGATTGAGGAAGAAGATGAAGAGCATTGCTTCCATCT 1205
|||||| ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1020 GGGTGGCAAGGA-ACGGTGGAGGTGATGGAGGAAGAAGATGAAGATCATTGCTTCCATCT 1078
Query 1206 CTTAAATCC-AAGTTCTGAAAATGCTCCCAGCTTCATGAAGAGATTTGTGGAGTTTATCA 1264
||| | || || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 CTTGAGCCCTAA-TTCTGAAAATGCTCCCAAATTCATGAAGAGATTTGTGGAGTTTATCA 1137
Query 1265 CTGGTTAACATTGTTCTTTGTGT 1287
||||| || ||||||||||||||
Sbjct 1138 CTGGTCAAAATTGTTCTTTGTGT 1160
> Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1
Length=1030
Score = 848 bits (459), Expect = 0.0
Identities = 810/974 (83%), Gaps = 45/974 (5%)
Strand=Plus/Plus
Query 321 ATCTGAAATCATCTCCGAGCATCCTCCGTTCGT-CAGGGTTTACAAAGACGGTCGTATCG 379
|||||||||| ||| ||| |||||| ||| | | || |||||||||||||||| |||
Sbjct 29 ATCTGAAATCGCCTCTGAGTTTCCTCCCTTC-TGCCGGATTTACAAAGACGGTCGCGTCG 87
Query 380 AACGTCT-TTCCGGCACCGAAA-CAGTCCCGGCTTCTCTA-AACCCACGAAACGACGTCG 436
|||| || | |||||||||| || |||| || |||||| | || || | |||||||||
Sbjct 88 AACGACTCAT-GGGCACCGAAACCA-TCCCTGCGTCTCTAGATCCAAC-ACACGACGTCG 144
Query 437 TTTCAAAAGACGTTGTCTACTCACCGGGGCATAACCTCTCCGTTCGTCTCTTTCTCCCTC 496
|||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 145 TTTCAAAAGACGTTATATACTCACCGGACCATAACCTCTCCGTTCGTCTCTTCCTCCCTC 204
Query 497 ACAAATCAACACAACTCGCCGCCGGT-AACAAACTCCCTCTACTTATCTACTTCCACGGC 555
||||||| ||| ||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 205 ACAAATCCACAAAACTCACCGCCGGTGAA-AAACTCCCTCTACTTATCTACATCCACGGC 263
Query 556 GGAGCTTGGATAAACGAATCCCCTTTCTCCCCAATCTACCACAATTTCCTCACGGAGGTA 615
||||||||||| | |||||| |||||||| |||||||||||||||| |||||| || ||
Sbjct 264 GGAGCTTGGATCATCGAATCACCTTTCTCTCCAATCTACCACAATTACCTCACTGAAGTT 323
Query 616 GTTAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAATACCGCCGTGCACCGGAAGATCCG 675
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 324 GTCAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAGTACCGTCGTGCACCGGAAGATCCG 383
Query 676 GTTCCGGCTGCCTATGAAGATACATGGTCTGCTATTCAATGGATTTTCTCACATTCCTGT 735
||||||||| | ||||||||| ||||||| || ||||||||||| ||||| ||||| |
Sbjct 384 GTTCCGGCTTCGTATGAAGATGCATGGTCCGCGATTCAATGGATCTTCTCTCATTC-TAA 442
Query 736 -GGATCTGGTGAAGAAGATTGGATTAACAAATACGCTGATTTCGA-AAGAGTTTTTCTCG 793
||||||||| | ||||||||||||||| |||| |||||||| || |||||||||||
Sbjct 443 CGGATCTGGTCCTGTGGATTGGATTAACAAACACGCCGATTTCGATAA-AGTTTTTCTCG 501
Query 794 CCGGAGATAGTGCCGGTGGTAATATATCTCATCACATGGCTATGAGAGCTGGTAAAGAGA 853
|||||||||| ||||| ||||| ||||| ||||||||||| |||| ||||||| ||||||
Sbjct 502 CCGGAGATAGCGCCGGCGGTAACATATCACATCACATGGCGATGAAAGCTGGTGAAGAGA 561
Query 854 AGC-T-TA-AGCCT-AGAATCAAAGGGACTG-TGATTGTGCATCCAGCGATT-TGGGGGA 907
|| | || | | | | ||||||||| | || || |||| |||||||| || ||||| |
Sbjct 562 AGAATCTAGATC-TGAAAATCAAAGGTATTGGTG-TTGTTCATCCAGCT-TTCTGGGG-A 617
Query 908 A-AGATCCGGTCGATGAGCACGATGTGCAAGATAGAGAGATCAGAGA--CGGAGTTGCAG 964
| ||||||||| ||||| ||||||| ||||||| ||| | | |||| |||| | || |
Sbjct 618 ACAGATCCGGTTGATGAATACGATGTTCAAGATAAAGAAA-C-GAGAATCGGAATCGCGG 675
Query 965 AAGTTTGGGAGAAAATTGTGAGTCCGAATAGTGTTGATGGAGCGGATGATCCGTGGTTTA 1024
| ||||||||||| || |||||||||||||||||| | ||| |||||||||||| |||||
Sbjct 676 ACGTTTGGGAGAAGATCGTGAGTCCGAATAGTGTTAACGGAACGGATGATCCGTTGTTTA 735
Query 1025 ATGTGGTTGGATCCGGGTCGAATTTTTCCGGGAT-GGGATGTGACAAGGTTTTGGTTGAG 1083
| || |||||||||||| ||||||| || || ||||||||| ||||||||||||| |
Sbjct 736 ACGTAAACGGATCCGGGTCGGATTTTTCTGG-ATTGGGATGTGAGAAGGTTTTGGTTGCG 794
Query 1084 GTGGCTGGGAAAGATGTGTTT-TGGCGGCAAGGATTAGCTTACGCGGCGAAGCTAAAGAA 1142
|||||||| |||||||||||| || ||||||| || ||||| ||||||||||| ||||
Sbjct 795 GTGGCTGGAAAAGATGTGTTTGTGA-GGCAAGGTTTGGCTTATGCGGCGAAGCTGGAGAA 853
Query 1143 GAGTGGGTGGAAAGGAGAG-GTGGAGGTGATTGAGGAAGAAGATGAAG-AGCAT-TGCTT 1199
||||| |||||||||| | ||||||||| |||||||||||| ||||| | ||| || ||
Sbjct 854 GAGTGAGTGGAAAGGA-ACTGTGGAGGTGGTTGAGGAAGAAGGTGAAGGA-CATGTGTTT 911
Query 1200 CCATCTCTT-AAATCC-AAGTTCTGAAAATGCTCCCAGCTTCATGAAGA-GATTTGTGGA 1256
| || | ||| || || |||||| || ||| || ||| |||||| | ||||| ||
Sbjct 912 C-ATTTGGAGAAA-CCTAA-TTCTGATAAGGCTTTGAGATTCTTGAAGAAG-TTTGTCGA 967
Query 1257 GTTTATCACTGGTT 1270
|||||| | |||||
Sbjct 968 GTTTATTATTGGTT 981
> Ahg923385 jgi|Araly1|923385|scaffold_104666.1
Length=992
Score = 717 bits (388), Expect = 0.0
Identities = 715/868 (82%), Gaps = 42/868 (5%)
Strand=Plus/Plus
Query 412 TCTCTAAACCCACGAAACGACGTCGTTTCAAAAGACGTTGTCTACTCACCGGGGCATAAC 471
||| ||||||||| |||||||||||||||||||||||| || |||||||||| ||| |||
Sbjct 120 TCTTTAAACCCACAAAACGACGTCGTTTCAAAAGACGTCGTATACTCACCGGAGCACAAC 179
Query 472 CTCTCCGTTCGTCTCTTTCTCCCTC-ACAAATCAACACAACTCG---CCGCCGGTAACAA 527
|||||||||||| | |||||||| | ||||||| ||| |||||| |||| ||||| ||
Sbjct 180 CTCTCCGTTCGTATGTTTCTCCC-CAACAAATCTACAAAACTCGCCACCGCGGGTAAAAA 238
Query 528 ACTCCCTCTACTTATCTACTTCCACGGCGGAGCTTGGAT-AAACGAATCCCCTTTCTCCC 586
||| ||||||||||||||||| ||||||||||||| || | || |||| |||||||| |
Sbjct 239 ACTACCTCTACTTATCTACTTTCACGGCGGAGCTTACATCATAC-AATCTCCTTTCTCTC 297
Query 587 CAATCTACCACAATTTCCTCACGGAGGTAGTTAAATCCGCTAACTGCCTCGCCGTCTCGG 646
| | ||||| || | | |||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 298 CGGTTTACCATAACTACATCACGGAGGTTGTTAAAACCGCTAACTGCCTCGCCGTGTCGG 357
Query 647 TTCAATACCGCCGTGCACCGGAAG-ATCCGGTTCCGGCTGCCTATGAAGATACATGGTCT 705
|||||||||| | ||| || | || |||| |||||||| || ||||| ||| |||||||
Sbjct 358 TTCAATACCGTCTTGCGCCAG-AGCATCCAGTTCCGGCGGCTTATGATGATTCATGGTCG 416
Query 706 GCTATTCAATGGAT-TTTCTCACATTCCTGTGGATCTGGTGAAGAAGATTGGATTAACAA 764
|||||||| ||||| ||| || |||| | | || | ||||||||||| |
Sbjct 417 GCTATTCAGTGGATCTTT-TCTCATT-C--T-GA-----T------GATTGGATTAATGA 460
Query 765 ATACGCTGATTTCGAAAGAGTTTTTCTCGCCGGAGATAGTGCCGGTGGTAATATATCTCA 824
|||||| |||||||| ||||||||| ||||||||||||| ||||| | |||||||| ||
Sbjct 461 ATACGCCGATTTCGACAGAGTTTTTATCGCCGGAGATAGCGCCGGAGCCAATATATCACA 520
Query 825 TCACATGGCTATGAGAGCTGGTAAAGAGAAGCTTAAGCCTAGAATCAAAGGGACTGTGAT 884
|||||||| || ||||||||| | ||||||||||||||| |||||||||||| ||| ||
Sbjct 521 TCACATGGGAATAAGAGCTGGTGAGGAGAAGCTTAAGCCTGGAATCAAAGGGATTGTTAT 580
Query 885 TGTGCATCCAGCG-ATTTGGGGGAAAGATCCGGTCGATG-AGCACGATGTGCAAGATAGA 942
|||||||||| | ||||||||||||||||| |||| | | |||||||||||||| |||
Sbjct 581 GGTGCATCCAG-GTTTTTGGGGGAAAGATCCGATCGACGTA-CACGATGTGCAAGACAGA 638
Query 943 GAGATCA-GAGACGGAGTTGCAGA-AGTTTGGGAGAAA-ATTGTGAGTCCGAATAGTGTT 999
|| || | ||| || | || | | ||||||| ||| || ||||| || | |||||||
Sbjct 639 GAAATAAGGAG-TAGAATCACACATA-TTTGGGA-AAAGATCGTGAGCCCTAGTAGTGTT 695
Query 1000 GATGGAGCGGATGATCCGTGGTTTAATGTGGTTGGATCCGGGTCGAATTTTTCCGGGATG 1059
||||| ||| ||||||||||||| ||||||||||||||||||||| || |||||| ||||
Sbjct 696 GATGGGGCGAATGATCCGTGGTTAAATGTGGTTGGATCCGGGTCGGATGTTTCCGAGATG 755
Query 1060 GGATGTGACAAGGTTTTGGTTGAGGTGGCTGGGAAAGATGTGTTTTGGCGGCAAGGATTA 1119
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 756 GGATGTGAGAAGGTTTTGGTTGCGGTGGCCGGGAAAGATGTGTTTTGGCGGCAAGGATTG 815
Query 1120 GCTTACGCGGCGAAGCTAAAGAAGAGTGGGTGGAAAGGAGAG-GTGGAGGTGATTGAGGA 1178
||||||||||||||| | ||||||||| |||||||||| | ||||| ||| | || ||
Sbjct 816 GCTTACGCGGCGAAGTTGGAGAAGAGTGAGTGGAAAGGA-ACCGTGGAAGTGGTGGAAGA 874
Query 1179 AGAAGATGAAG-AGCATTGCTTCCATCTCT-TAAATCCAAGTTCTGAAAATGCTCCCAGC 1236
||||| |||| | || |||||||||||| ||| || | |||| |||| ||| | |
Sbjct 875 CGAAGAGGAAGGA-CACTGCTTCCATCTCCATAAC-CCTATTTCTCAAAACGCTTCGAAA 932
Query 1237 TTCATGAAGAGATTTGTGGAGTTTATCA 1264
|| |||| || |||||||||||||||||
Sbjct 933 TTGATGAGGAAATTTGTGGAGTTTATCA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5