BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49660.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1 1400 0.0
> Ahg474099 jgi|Araly1|474099|fgenesh2_kg.1__4053__AT1G49660.1
Length=1030
Score = 1400 bits (758), Expect = 0.0
Identities = 899/968 (93%), Gaps = 6/968 (1%)
Strand=Plus/Plus
Query 59 AATCAATGGAATCTGAAATCGCCTCCGAGTTTCTTCCTTTCTGCCGGATTTACAAAGACG 118
||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 19 AATCAATGGAATCTGAAATCGCCTCTGAGTTTCCTCCCTTCTGCCGGATTTACAAAGACG 78
Query 119 GTCGTGTAGAACGACTCATCGGCACCGATACCATCCCGGCCTCTCTAGATCCAACATACG 178
|||| || ||||||||||| |||||||| |||||||| || ||||||||||||||| |||
Sbjct 79 GTCGCGTCGAACGACTCATGGGCACCGAAACCATCCCTGCGTCTCTAGATCCAACACACG 138
Query 179 ACGTCGTTTCAAAAGACGTTATATACTCACCGGAGAATAACCTCTCCGTTCGTCTCTTCC 238
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 139 ACGTCGTTTCAAAAGACGTTATATACTCACCGGACCATAACCTCTCCGTTCGTCTCTTCC 198
Query 239 TCCCTCACAAATCAACAAAACTCACCGCCGGT-AACAAGCTCCCTCTACTTATCTACATC 297
||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||
Sbjct 199 TCCCTCACAAATCCACAAAACTCACCGCCGGTGAA-AAACTCCCTCTACTTATCTACATC 257
Query 298 CACGGCGGAGCTTGGATCATCGAGTCACCTTTCTCCCCACTCTACCACAATTACCTCACT 357
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 258 CACGGCGGAGCTTGGATCATCGAATCACCTTTCTCTCCAATCTACCACAATTACCTCACT 317
Query 358 GAAGTAGTCAAATCCGCTAACTGCCTCGCTGTCTCTGTTCAGTATCGCCGTGCACCGGAA 417
||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct 318 GAAGTTGTCAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAGTACCGTCGTGCACCGGAA 377
Query 418 GATCCTGTTCCGGCGGCTTATGAAGATGTATGGTCCGCGATTCAGTGGAT-TTTTGCTCA 476
||||| |||||||| | |||||||||| ||||||||||||||| ||||| || | ||||
Sbjct 378 GATCCGGTTCCGGCTTCGTATGAAGATGCATGGTCCGCGATTCAATGGATCTTCT-CTCA 436
Query 477 TTCTAATGGATCTGGTCCTGTAGATTGGATTAACAAACACGCCGATTTCGGTAAAGTTTT 536
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 437 TTCTAACGGATCTGGTCCTGTGGATTGGATTAACAAACACGCCGATTTCGATAAAGTTTT 496
Query 537 CCTCGGCGGAGATAGCGCAGGCGGTAACATATCGCATCACATGGCGATGAAAGCTGGTAA 596
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 497 TCTCGCCGGAGATAGCGCCGGCGGTAACATATCACATCACATGGCGATGAAAGCTGGTGA 556
Query 597 AGAGAAGAAGCTAGATCTCAAAATCAAAGGTATTGCTGTTGTTCATCCAGCTTTCTGGGG 656
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 557 AGAGAAGAATCTAGATCTGAAAATCAAAGGTATTGGTGTTGTTCATCCAGCTTTCTGGGG 616
Query 657 AACAGATCCGGTTGATGAATACGATGTGCAAGATAAAGAAACGAGAAGCGGAATCGCGGA 716
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 617 AACAGATCCGGTTGATGAATACGATGTTCAAGATAAAGAAACGAGAATCGGAATCGCGGA 676
Query 717 AATTTGGGAGAAGATTGCGAGTCCGAATAGTGTTAATGGGACGGATGATCCGTTGTTTAA 776
||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||
Sbjct 677 CGTTTGGGAGAAGATCGTGAGTCCGAATAGTGTTAACGGAACGGATGATCCGTTGTTTAA 736
Query 777 TGTAAACGGATCCGGGTCGGATTTTTCTGGGTTGGGATGTGATAAGGTTTTGGTTGCGGT 836
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 737 CGTAAACGGATCCGGGTCGGATTTTTCTGGATTGGGATGTGAGAAGGTTTTGGTTGCGGT 796
Query 837 AGCTGGGAAAGATGTGTTTGTTAGGCAAGGATTGGCTTATGCGGCGAAGCTGGAGAAGTG 896
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 797 GGCTGGAAAAGATGTGTTTGTGAGGCAAGGTTTGGCTTATGCGGCGAAGCTGGAGAAGAG 856
Query 897 TGAGTGGGAAGGTACTGTTGAGGTGGTTGAGGAAGAAGGTGA-GGACCATGTGTTTCATT 955
||||||| |||| ||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 857 TGAGTGGAAAGGAACTGTGGAGGTGGTTGAGGAAGAAGGTGAAGGAC-ATGTGTTTCATT 915
Query 956 TGCAGAATCCTAAATCTGATAAGGCTTTGAAATTCTTGAAGAAGTTTGTCGAGTTTATTA 1015
|| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 916 TGGAGAAACCTAATTCTGATAAGGCTTTGAGATTCTTGAAGAAGTTTGTCGAGTTTATTA 975
Query 1016 TTGGTTGA 1023
||||||||
Sbjct 976 TTGGTTGA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5