BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49670.2
Length=2833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337119 jgi|Araly1|337119|fgenesh1_pg.C_scaffold_1003684 1973 0.0
> Ahg337119 jgi|Araly1|337119|fgenesh1_pg.C_scaffold_1003684
Length=1905
Score = 1973 bits (1068), Expect = 0.0
Identities = 1200/1265 (95%), Gaps = 4/1265 (0%)
Strand=Plus/Plus
Query 88 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 60
Query 148 GCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAG 207
|||||||||||||||||||| || |||||||| ||||| || || | |||||||||||||
Sbjct 61 GCTCTCTGCTTAGCTCTTGCGGATAAAGGAGTGTTTGTTACGGTGGTTGATTTTTCGGAG 120
Query 208 GAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGAAGCGAATGCCAAGTTTCAT-CAGGG 266
|||||||||||||||||||| |||||||||||| |||| |||||||| | |||| | |||
Sbjct 121 GAGAAAGGACAAGAGACTACCTCGCTTGTTCGAAAAGCAAATGCCAAATATCATCCCGGG 180
Query 267 CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGGAGATCTCCT 326
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 181 -TTAAGCTCTCCTTCTGCTATCTTTGTGAAATGTGATGTCACTAATAGAGGAGATCTCGT 239
Query 327 CGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTGACATCTGTATCAACAATGC 386
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GGCTGCTTTCGAGAAGCACTTAGCCACATTTGGAACACTTGACATTTGTATCAACAATGC 299
Query 387 TGGGATTAGCACTCCTTTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 446
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGGATTAGCACTCCTCTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 359
Query 447 ACACACCATTAATGTCGATCTGATTGCAGTAGTTGAAGGCACACAACTTGCGATCAAAGC 506
||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||
Sbjct 360 ACACACCATTAATGTCGATCTCATTGCAGTAATCCAAGGCACACAACTTGCAATCAAAGC 419
Query 507 TATGAAAGCAAAACAAAAGCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 566
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATGAAAGCCAAACAAAATCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 479
Query 567 TCCAATGCCCGTTGATCCTATCTATGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 626
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TCCAATGCCCATTGATCCTATCTACGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 539
Query 627 ATCATTAGCATATTACAGGCGCCAGGGGATTCGCATCAATGTGCTTTGCCCTGAATTTAT 686
||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 540 ATCATTAGCATATTACAGGCGTCAAGGGATCCGCATCAATGTACTTTGCCCTGAATTTAT 599
Query 687 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTAGAGTCAATAGGCGGTTACAT 746
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 600 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTTCAGTCAATAGGTGGTTACAT 659
Query 747 GTCTATGGACATGTTGATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCGGG 806
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GTCTATGGACATGTTAATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCCGG 719
Query 807 GGCATGTCTATGGATTACCAAACGCAGGGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 866
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GGCATGTCTATGGATTACCAACCGCAGAGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 779
Query 867 GACAAAGTACTTGGTGGGTTCAAGTTCCAGGAAAAGACCTTCTTTTAAAGTTTCTACAAA 926
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||
Sbjct 780 GACAAAGTACTTGGTGGGTTCAAGTTCCAGAAAAAGACCTTCGTTTAAAGTATCTTCCAA 839
Query 927 AATAGAATTTCCTCAAAGCTTCGAGAAAATGATTGTACACACCTTGTCTCACAAATTCCG 986
||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 840 AATTGAACTTCCTCAAAGCTTCGAGAAAATAATTGTACACACCTTGTCTCATAAATTCCG 899
Query 987 CAGTGCTACCCGCATAGTCCGTGCACCACTACAATTACCCATTGGACCACACCAAGTTCT 1046
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 CAACGCTACCCGCATAGTCCGTGCACCACTAAAATTACCCATTGGACCACACCAAGTTCT 959
Query 1047 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1019
Query 1107 CTTTA-CTGGTGGCTCCCCGAAGCTTCCCTTTGATGCTGGATTTGAGGGAGTTGGACTAA 1165
||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 CTTTAGC-GGCGGCTCACCGAAGCTTCCCTTTGATGCTGGGTTTGAGGGAGTTGGACTAA 1078
Query 1166 TTGCAGCAGTGGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1225
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TAGCAGCAGTAGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1138
Query 1226 CGTTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTTCTTCCTGTTCCAA 1285
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1139 CATTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTGCTTCCTGTTCCGA 1198
Query 1286 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1258
Query 1346 AAAAG 1350
|||||
Sbjct 1259 AAAAG 1263
Score = 1002 bits (542), Expect = 0.0
Identities = 612/643 (95%), Gaps = 15/643 (2%)
Strand=Plus/Plus
Query 1418 AGGCAGGACAAATGAAATCAGGTGAAACTGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1262 AGGCAGGACAAATGAAATCAGGTGAAACAGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1321
Query 1478 GACAATTT---G--C--AG----TC----CAGCTTGCAAAGTTATCAGGAAATAAAGTGA 1522
|||||||| | | || || ||||||||||||||| |||||||||||||||
Sbjct 1322 GACAATTTGCAGTCCAGAGATTCTCTATGCAGCTTGCAAAGTTAGCAGGAAATAAAGTGA 1381
Query 1523 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTTGGGGTCGATCGAG 1582
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1382 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTCGGGGTCGATCGAG 1441
Query 1583 TCATAGACTACAAATCCGAGAATATAAAGACGGTCTTGAAAAAGGAGTTTCCGAAGGGTG 1642
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 1442 TCATAGACTACAAATCCGAGAATATCAAGACTGTCTTGAAAAAAGAGTTTCCAAAGGGTG 1501
Query 1643 TAAATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1702
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TGGATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1561
Query 1703 CTGTTTACGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1762
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CTGTTTACGGAAGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1621
Query 1763 GGGAACCTGCAAAATATCCAGGGCTCTGCGAGAAAATTTTAGCAAAAAGCCAAACCGTGG 1822
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1622 GGGAACCCGCAAAATATCCAGGGCTCTGCGAGAAACTTTTAGCAAAAAGCCAAACCGTGG 1681
Query 1823 CTGGTTTCTTTCTGGTGCAATATAGTCAACTGTGGAAACAAAATCTTGACAAGTTGTTCA 1882
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1682 CTGGTTTCTTTCTGGTGCAATACAGTCAACTGTGGAAACAAAATCTTGACAAGTTATTCA 1741
Query 1883 ATCTTTACGCTCTCGGAAAGCTCAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1942
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1742 ATCTTTACTCTCTCGGAAAGCTTAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1801
Query 1943 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 2002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 1861
Query 2003 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 2045
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106919317715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5