BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49700.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337121 jgi|Araly1|337121|fgenesh1_pg.C_scaffold_1003686 401 3e-111
Ahg924268 jgi|Araly1|924268|scaffold_105549.1 62.1 6e-09
> Ahg337121 jgi|Araly1|337121|fgenesh1_pg.C_scaffold_1003686
Length=612
Score = 401 bits (217), Expect = 3e-111
Identities = 419/513 (82%), Gaps = 28/513 (5%)
Strand=Plus/Plus
Query 97 ATGACTTATATGTATGATCATGACCATATTCCTAAACATATCACTGCAACAATTTGGGAA 156
||||||||| | ||| |||||||| | |||| | | ||||||||||||||||||||||||
Sbjct 1 ATGACTTATCTCTATAATCATGACAAGATTCTTCATCATATCACTGCAACAATTTGGGAA 60
Query 157 CATCTTCAAAGAGAGAACCCAAATTTCTTTAAAGAATACAACAAACGATGCGAATTGGTT 216
|||||||||||||||| |||||||||||| | |||||||||||| ||||||| |||| |
Sbjct 61 CATCTTCAAAGAGAGAGCCCAAATTTCTTCGACGAATACAACAAAAGATGCGAGTTGGCT 120
Query 217 CGTCAAATAGTTACACTCAACGACTTGCTTGCTCAGCAAATAGATCTGATGCAAAGACTT 276
|||||||||| || | |||| || ||||| |||||||||| | || || | || ||
Sbjct 121 CGTCAAATAGCTAAATTCAATGATTTGCTAGCTCAGCAAA-A-AT---AT-CTAA---TT 171
Query 277 AGCCAACTTGATGTTGGTACTACTGCACCAGTAACAAAGTTGCAAGAACCTAATGATCAT 336
| | ||| | | ||| | ||||||||||||||||||||| ||| ||||||||||
Sbjct 172 -G--ATCTT-A-GC----ACTTCAGCACCAGTAACAAAGTTGCAAAAACTTAATGATCAT 222
Query 337 CATCATGATGAAG-TCCAAACT-CTTGAACAGTGGTTGGAGACTAATGGTTTTGCTAATA 394
||| ||||| ||| | ||| | | ||| || ||||| | | || ||| ||||||| |||
Sbjct 223 CATGATGATCAAGAT--AAAGTTCATGATCAATGGTTTGTGTCTGATGATTTTGCTGATA 280
Query 395 TAGAAGATACATTCCTTTGTTTAAGCGATCTGGTTGATGCACCAGTAACAGAGGTGCAGA 454
|||||||| |||||| || ||||| ||||| ||||| |||| | |||||| || ||||||
Sbjct 281 TAGAAGATGCATTCCCTTCTTTAATCGATCCGGTTGCTGCATCGGTAACAAAGTTGCAGA 340
Query 455 AACCTAAGGATAAAGATCAAAGTTGTGATCAGTGGATTAATGGGTCTAATGATTTAGCTT 514
| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 341 AGCCTAATGATCAAGATCAAATTTGTGATCAGTGGATTAATGGAACTAATGATTTGGCTT 400
Query 515 CTATAGAAGAAACAGTTTCTTCTTTGATCAATCCATCACCATTTGCTGAAACACCACAAT 574
|||||| ||||| |||||||||| | ||| |||| ||||| || ||||||||||||||||
Sbjct 401 CTATAGGAGAAATAGTTTCTTCTCTCATCGATCCGTCACCGTTGGCTGAAACACCACAAT 460
Query 575 CAGAACCTCCT------GGTCTACGATACGATA 601
|||| |||||| ||||||||||||||||
Sbjct 461 CAGATCCTCCTACAACTGGTCTACGATACGATA 493
> Ahg924268 jgi|Araly1|924268|scaffold_105549.1
Length=584
Score = 62.1 bits (33), Expect = 6e-09
Identities = 55/65 (85%), Gaps = 4/65 (6%)
Strand=Plus/Plus
Query 64 TGTATTCAAAAGTACATGAGTTTGGAAGAAACCATGACT-TATATGTATGATCA-TGACC 121
|||||||||||||||||||||||||||||||| ||| | ||| || |||| || | ||
Sbjct 111 TGTATTCAAAAGTACATGAGTTTGGAAGAAACGGTGA-TATATCTGCATGA-CAATCACA 168
Query 122 ATATT 126
|||||
Sbjct 169 ATATT 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5