BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49710.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923398 jgi|Araly1|923398|scaffold_104679.1 2409 0.0
Ahg479443 jgi|Araly1|479443|fgenesh2_kg.3__2144__AT3G19280.1 1059 0.0
Ahg923394 jgi|Araly1|923394|scaffold_104675.1 433 3e-120
> Ahg923398 jgi|Araly1|923398|scaffold_104679.1
Length=1579
Score = 2409 bits (1304), Expect = 0.0
Identities = 1492/1584 (94%), Gaps = 7/1584 (0%)
Strand=Plus/Plus
Query 159 TTGATTCATCCTCTAGGTTAATGGGTGTTTTCTCGAATCTTCGAGGACCCAGAGCCGGAG 218
||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 TTGATTCCTCCTCTAGTTTAATGGGTGTTTTCTCAAATCTTCGAGGACCCAGAATCGGAG 60
Query 219 CTACCCACGATGAATTTCCGGCGACCAATGGCTCTCCTTCGTCTTCTTCTTCTCCATCTT 278
|||||||||||||||| |||||| | |||||||||||||| |||||||| ||||| |||
Sbjct 61 CTACCCACGATGAATTACCGGCGGCAAATGGCTCTCCTTCTTCTTCTTCGTCTCCCTCTA 120
Query 279 CATCAATCAAGCGAAAATTATCGAATTTGTTACCACTCTGCGTTGCTCTGGTAGTTATCG 338
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CATCAATCAAGCGAAAGTTGTCGAATTTGTTACCACTCTGCGTTGCTCTTGTAGTTATCG 180
Query 339 CTGAGATCGGGTTTCTGGGTCGGCTCGATAAAGTCGCTTTGGTTGATACGTTGACTGATT 398
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 181 CTGAGATCGGGTTTCTGGGTCGGCTCGATAAAGTCGCTTTAGTCGATACGTTGACCGATT 240
Query 399 TCTTCACCCAGTCTCCGTCACTCTCGCAGTCTCCACCGGCGAGATCCGATCGGAAGAAGA 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCTTCACCCAGTCTCCGTCACTCTCGCAGTCTCCACCGGCGAGATCCGATCGGAAAAAGA 300
Query 459 TCGGATTATTTACTGATAGGAGCTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTACTT 518
||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGGATTGTTTACAGATA--A-CTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTACTT 357
Query 519 ACTCTAGAGATTTTACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCAAT 578
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 ATTCTAGAGATTTCACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTAAAT 417
Query 579 GGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAACACCAGATGCTGCGTTTG 638
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 GGTGTCCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAAAACCAGATGCTGCGTTTG 477
Query 639 GATTAGGTCAGAAACCTGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTATT 698
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 478 GATTAGGTCATCAACCTGGAACTCTTAGTATAATCCGCTCCATGGAATCAGCACAGTACT 537
Query 699 ATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTA 597
Query 759 GTCTATCATCAGATGTTCCTGTTGGATATTTTTCGTGGGCGGAGTATGATATTATGTCTC 818
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 598 GTCTATCATCAGATGTTCCTGTTGGGTATTTTTCGTGGGCGGAGTATGATATTATGGCTC 657
Query 819 CGGTACAGCCAAAAACTGAGAGAGCTATTGCAGCTGCTTTTATTTCTAATTGTGGTGCTC 878
|||||||| | || || || | |||||| |||||||||||||||||||||||||||||||
Sbjct 658 CGGTACAGGCTAAGACCGAAAAAGCTATCGCAGCTGCTTTTATTTCTAATTGTGGTGCTC 717
Query 879 GGAATTTTCGTCTACAAGCACTTGAGGCATTGATGAAAACTAACATTAAGATTGATTCTT 938
||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 718 GGAATTTTCGTTTACAAGCACTTGAAGCCCTGATGAAAACTAACGTTAAGATTGATTCTT 777
Query 939 ATGGTGGTTGTCATCGAAACCGGGATGGGAAAGTTGACAAGGTTGAAGCTCTTAAGCGAT 998
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 ATGGTGGTTGTCATCGAAACCGGGATGGAAAAGTTGACAAGGTTGAAGCTCTTAAGCGAT 837
Query 999 ACAAATTCAGTTTGGCTTTTGAGAATACTAACGAGGAAGATTATGTCACCGAGAAGTTCT 1058
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 838 ACAAATTCAGTTTGGCTTTTGAGAATACTAACGAGGAGGATTATGTCACCGAGAAATTCT 897
Query 1059 TTCAATCCTTAGTTGCTGGGTCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAAT 1118
| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCCAATCCCTAGTTGCTGGATCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAAT 957
Query 1119 TTGCGCCTGCTTCGGACTCATTCCTTCACATTAAGACTATGGAAGATGTAGAGCCAGTTG 1178
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 958 TTGCGCCTGCTTCAGACTCATTCCTTCACATTAAGAGTATGGAAGATGTAGAGCCAGTTG 1017
Query 1179 CAAAGAGAATGAAGTATCTCGCAGCTAACCCTGCTGCTTATAATCAGACACTAAGATGGA 1238
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 CAAAGAGAATGAAGTATCTTGCAGCTAACCCTACTGCTTATAATCAGACACTAAGATGGA 1077
Query 1239 AATACGAGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTT 1298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AATATGAGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTT 1137
Query 1299 CTTGCCGTCTCTGCATTTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGGAAAGCCCTA 1358
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1138 CTTGCCGTCTCTGCATTTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGAAAAGCCCGA 1197
Query 1359 ATTTCAAGAAACGACCGTGCAAATGTAGCAGGGGAGGATCAGACACAGTTTATCATGTTT 1418
|||||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||
Sbjct 1198 ATTTCAAGAAACGACCTTGCAAATGCAGTAGGGGAGGATCAGACACACTTTATCATGTTT 1257
Query 1419 TTGTTAGAGAAAGAGGCCGGTTTGAAATGGAATC-AGTCTTTTTGAGGGGTAAAAGTGTG 1477
|||||||||||||||||||||||||||||||||| | ||||| | |||||||||| | ||
Sbjct 1258 TTGTTAGAGAAAGAGGCCGGTTTGAAATGGAATCCA-TCTTTCTAAGGGGTAAAAATCTG 1316
Query 1478 ACTCAGGAAGCTCTAGAATCTGCAGTTCTCGCCAAGTTCAAGTCT-TTAAAACATGAGGC 1536
||||||||||||||||||||||| |||||| |||| ||||||||| ||||| | |||| |
Sbjct 1317 ACTCAGGAAGCTCTAGAATCTGCGGTTCTCACCAAATTCAAGTCTCTTAAA-CGTGAGCC 1375
Query 1537 AGTGTGGAAGAAGGAAAGGCCTGGAAACTTAAAAGGAGACAAAGAGCTTAAAATACATCG 1596
|| |||||||||||||||||||||| ||||||||||||||| ||||||| | |||| ||
Sbjct 1376 GGTTTGGAAGAAGGAAAGGCCTGGAAGCTTAAAAGGAGACAATGAGCTTAGAGTACACCG 1435
Query 1597 GATTTACCCGCTTGGCCTAACGCAACGACAGGCTTTGTACAACTTCAAATTCGAGGGAAA 1656
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1436 GATATATCCGCTTGGCCTAACGCAACGACAGGCTTTGTACAAGTTCAAATTCGAGGGAAA 1495
Query 1657 TTCGAGTCTAAGTAGTCACATTCAAAACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1716
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1496 CTCGAGTTTAAGTAGTCACATTCAAGACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1555
Query 1717 CTAGTTTCATTCCTCTGGATCTGT 1740
||||||||||||||||| ||||||
Sbjct 1556 CTAGTTTCATTCCTCTGAATCTGT 1579
> Ahg479443 jgi|Araly1|479443|fgenesh2_kg.3__2144__AT3G19280.1
Length=1732
Score = 1059 bits (573), Expect = 0.0
Identities = 1041/1262 (82%), Gaps = 51/1262 (4%)
Strand=Plus/Plus
Query 482 TGCGAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTACTCTAGAGATTTTACTAAAGA 540
||| |||||||||| || ||||| || ||||| ||||| ||||||||||| | |||| |
Sbjct 300 TGCCAGGAGTGGTTAGA-GAGAGTGGACTCAGTGACTTATTCTAGAGATTTCAGTAAAAA 358
Query 541 TCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTC-AATGGTGTTCTGTGGATTGTACA 598
|||||| |||||| ||||| || || |||||| ||| ||| ||||||||| ||||||
Sbjct 359 TCCAATCTTTATCGCTGGTAGT-AACAAGGAC-TTCGAATCGTGTTCTGTTGATTGT--G 414
Query 599 TT-TGGAGA-T-AGTTCAGGGAA-AACACCAGATGCTGCGTTTGGATTAGGTCAGAAACC 654
|| ||| || | ||||||| || || ||| ||||| |||||||||||| |||| ||||
Sbjct 415 TTATGG-GATTCAGTTCAGATAAGAA-ACCCGATGCGGCGTTTGGATTAAGTCATCAACC 472
Query 655 TGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTATTATCCAGAAAATGATCT 714
|||||| || |||||||| |||||||||||||| |||||||| |||| ||| || ||||
Sbjct 473 TGGAACACTCAGTATAATCCGTTCCATGGAATCGGCACAGTACTATCAAGAGAACAATCT 532
Query 715 TGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTAGTCTATCATCAGATGT 774
||| || ||||||||||| ||||||||| | |||||||| |||||||| |||||||||||
Sbjct 533 TGCTCAAGCACGACGGAGGGGTTATGATGTTGTGATGACAACTAGTCTGTCATCAGATGT 592
Query 775 TCCTGTTGGATATTTTTCGTGGGCGGAGTATGATATTATGTCTCCGGTACAGCCAAAAAC 834
||||||||| |||||||| |||||||| |||||||||||| |||| || || ||||| ||
Sbjct 593 TCCTGTTGGGTATTTTTCATGGGCGGAATATGATATTATGGCTCCAGTGCATCCAAAGAC 652
Query 835 TGAGAGAGCTATTGCAGCTGCTTTTATTTCTAATTGTG-GTGCTCGGAATTTTCGTCTAC 893
|||| |||| |||| ||||||||||| || ||||||| | ||||||||||| || || |
Sbjct 653 CGAGAAAGCTCTTGCTGCTGCTTTTATATCCAATTGTGCG-GCTCGGAATTTCCGCCTGC 711
Query 894 AAGCACTTGAGGCATTGATGAAAACTAACATTAAGATTGATTCTTATGGTGGTTGTCATC 953
|||| ||||| || || ||| | | || |||||||||||||||||||||||||||| |
Sbjct 712 AAGCTCTTGAAGCCTTAATGGAGGCGAATGTTAAGATTGATTCTTATGGTGGTTGTCACC 771
Query 954 GAAACCGGGATGGGAAAGTTGACAAGGTTGAAGCTCTTAAGCGA-TACAAATTCAGTTTG 1012
| || |||||||||| || || ||||||||||||||||||| | |||||||||||| |
Sbjct 772 GGAATCGGGATGGGAGTGTGGAGAAGGTTGAAGCTCTTAAGC-ACTACAAATTCAGTCTA 830
Query 1013 GCTTTTGAGAATACTAACGAGGAAGATTATGTCACCGAGAAGTTCTTTCAATCCT-TAGT 1071
||||||||||| || |||||||| || || ||||| ||||||||||| |||| || ||||
Sbjct 831 GCTTTTGAGAACACCAACGAGGAGGACTACGTCACAGAGAAGTTCTTCCAAT-CTCTAGT 889
Query 1072 TGCTGGGTCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCCTGCTTC 1131
|||||| || ||||| ||||| ||||| |||||||||||||||||||||| ||| || |
Sbjct 890 TGCTGGATCTGTCCCTGTGGTTGTTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCC 949
Query 1132 GGACTCATTCCTTCACATTAAG-ACTATGGAAGATGT-AGAGCCAGTTGCAAAGAGAATG 1189
||||||||||||||||||||| | ||||| ||||| | || |||||||||||| ||||
Sbjct 950 TGACTCATTCCTTCACATTAAGCAG-ATGGATGATGTCA-AGGCAGTTGCAAAGAAAATG 1007
Query 1190 AAGTATCTCGCAGCTAACCCTG-CTGCTTATAATCAGACACTAAGATGGAAATACGAGGG 1248
|||||||| || | |||||||| | || |||| |||||| |||||||||||| |||| ||
Sbjct 1008 AAGTATCTTGCGGATAACCCTGAC-GCCTATACTCAGACGCTAAGATGGAAACACGAAGG 1066
Query 1249 TCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTTCTTGCCGTCT 1308
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 1067 CCCTTCAGATTCTTTTAAGGCACTTATTGATATGGCTGATGTACACTCTTCTTGTCGTCT 1126
Query 1309 CTGCAT-TTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGGAA-AGCCCTAA-TTTCAA 1365
|||||| ||| |||| || ||| | || || ||||||||| || |||||| | ||| ||
Sbjct 1127 CTGCATCTTTG-TGGCTACAAGGATTCGTGAGCAAGAAGAG-AAGAGCCCTGAGTTT-AA 1183
Query 1366 GAAACGACCGTGCAAATGTAGCAGGGGAGGATCAGACACAGTTTATCATGTTTT-TGTTA 1424
|| |||||| |||||||| |||||||| | |||||| ||||||||| || | |||||
Sbjct 1184 GAGACGACCCTGCAAATGCAGCAGGGGCTCA-CAGACA--GTTTATCAT-TTGTATGTTA 1239
Query 1425 GAGAAAGAGGCCGGTTTGAAATGGAATC-AGTCTTTTTGAGGGGTA-AAAGTGTGACTCA 1482
|||||||||| |||||||| |||||||| | |||| |||| | | ||| | ||||||
Sbjct 1240 GAGAAAGAGGACGGTTTGACATGGAATCCA-TCTTCTTGAACGATGGAAA-TCTGACTCC 1297
Query 1483 GGAAGCTCTAGAA-TCTGCAGTTCTCGCCAAGTTCAAGTCTTTAAAACATGAGGC-AGTG 1540
||||||||| ||| ||||||||||| || |||||||||||| | | |||||| | | |
Sbjct 1298 GGAAGCTCT-GAAATCTGCAGTTCTTGCAAAGTTCAAGTCTCTGAGACATGAACCGA-TA 1355
Query 1541 TGGAAGAAGGAAAGGCCTG-GAAACTTAAAAGGAGACAAAGAGCTTAAAATACATCGGAT 1599
|||||||||||||| || | || ||||| |||||| ||||||| | ||||| ||||
Sbjct 1356 TGGAAGAAGGAAAGACCCGCGAC-CTTAAGAGGAGATGGTGAGCTTAGAGTACATGGGAT 1414
Query 1600 TTACCCGCTTGGCCTAACGCAACGACAGGCT-TTGTACAACTTCAAATTCGAGGGAAATT 1658
|| |||||||| || || ||| |||| || || ||||||||||||||||| |||||||
Sbjct 1415 ATATCCGCTTGGTCTGACTCAAAGACAAGCCCTT-TACAACTTCAAATTCGAAGGAAATT 1473
Query 1659 CGAGTCTAAGTAGTCACATTCAAA-ACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGTC 1717
| ||||| |||| |||||| || | | ||||||||| | ||||| || |||||||| |||
Sbjct 1474 CAAGTCTCAGTACTCACATACAGAGA-AACCCTTGTTCCAAATTCGAAGTTGTCTTTGTC 1532
Query 1718 TA 1719
||
Sbjct 1533 TA 1534
> Ahg923394 jgi|Araly1|923394|scaffold_104675.1
Length=1091
Score = 433 bits (234), Expect = 3e-120
Identities = 271/288 (94%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 457 GATCGGATTATTTACTGATAGGAGCTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTAC 516
||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 372 GATCGGATTGTTTACTGAT---AGCTGCAAGGAGTGGTTGATGAGAGAAGATTCAGTTAC 428
Query 517 TTACTCTAGAGATTTTACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCA 576
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TTATTCTAGAGATTTCACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCA 488
Query 577 ATGGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAACACCAGATGCTGCGTT 636
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 489 ATGGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAAAACCAGATGCTGCGTT 548
Query 637 TGGATTAGGTCAGAAACCTGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTA 696
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 TGGATTAGGTCATCAACCTGGAACTCTTAGTATAATTCGTTCCATGGAATCAGCACAGTA 608
Query 697 TTATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATAT 744
||||||||||||||| ||||||||||||||||| | | | |||||||
Sbjct 609 CTATCCAGAAAATGATATTGCACAGGCACGACGGTG-G-T-ATGATAT 653
Score = 261 bits (141), Expect = 1e-68
Identities = 151/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 970 AGTTGACAAGGTTGAAGCTCTTAAGCGATACAAATTCAGTTTGGCTTTTGAGAATACTAA 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 909 AGTTGACAAGGTTGAAGCTCTTAAGCGATACAAATTCAGTTTGGCTTTTGAGAACACTAA 968
Query 1030 CGAGGAAGATTATGTCACCGAGAAGTTCTTTCAATCCTTAGTTGCTGGGTCCGTCCCCGT 1089
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 969 CGAGGAGGATTATGTCACCGAGAAATTCTTTCAATCCTTAGTTGCTGAATCCGTCCCCGT 1028
Query 1090 GGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCC 1125
||||||||||||||||||||||||||||||||||||
Sbjct 1029 GGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCC 1064
Score = 215 bits (116), Expect = 1e-54
Identities = 152/170 (89%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 802 GTATGATATTATGTCTCCGGTACAGCCAAAAACTGAGAGAGCTATTGCAGCTGCTTTTAT 861
||||||||||||| ||||||||||| | || || |||| |||||| ||||||||||||||
Sbjct 645 GTATGATATTATGGCTCCGGTACAGGCTAAGACCGAGAAAGCTATCGCAGCTGCTTTTAT 704
Query 862 TTCTAATTGTGGTGCTCGGAATTTTCGTCTACAAGCACTTGAGGCATTGATGAAAACTAA 921
||| ||||||||||||||||||||||| |||||||||||||| || ||||||| |||||
Sbjct 705 TTCCAATTGTGGTGCTCGGAATTTTCGCCTACAAGCACTTGAAGCCCTGATGAAGACTAA 764
Query 922 CATTAAGATTGATTCTTATGGTGGTTGTCATCGAAACCGGGATGGGAAAG 971
||| ||||||||||||||||||||||||||||| |||||| || | ||||
Sbjct 765 CATCAAGATTGATTCTTATGGTGGTTGTCATCGGAACCGGCATAGAAAAG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5