BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49720.2
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1 1701 0.0
Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1 111 1e-23
> Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1
Length=1533
Score = 1701 bits (921), Expect = 0.0
Identities = 1088/1165 (93%), Gaps = 25/1165 (2%)
Strand=Plus/Plus
Query 68 AGAATTTGGAAGGAAGTGATTCCGTTGTGAAACAGAAAAGAAGTATGGGTACTCACATTG 127
|||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
Sbjct 90 AGAA-TTGGAAGGAAGTGATTTC-TTGTGAAACAGAGAAGAAGTATGGGTACTCACATCG 147
Query 128 ATATCAACAACTTAGGCGGCGATACT-TCT--A--G-A-G-G-G-AATG------AGTCA 171
|| |||||||||||||||||||| | ||| | | | | | | |||| |||||
Sbjct 148 ATTTCAACAACTTAGGCGGCGAT-TTGTCTGGAGGGAATGAGTGTAATGCTAACCAGTCA 206
Query 172 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGCACA 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 207 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGTACA 266
Query 232 TTAGGTGAGCCGGGGAAAGATTTTGGGTCTATGAATATGGATGAGTTACTCAAGAACATA 291
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 267 TTAGGTGAGCCAGGGAAAGATTTTGGGTCAATGAATATGGATGAGCTACTCAAGAACATA 326
Query 292 TGGACTGCTGAGGATACTCAAGCCTTTATGACTACTACATCTTCGGTTGCAGCCCCGGGA 351
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 327 TGGACTACTGAGGATACTCAAGCCTTTATGACTGCTACATCTTCGGTTGCAGCAGCGAGA 386
Query 352 CCTAGTGGTTTTGTTCCGGGAGGAAATGGTTTACAGAGGCAAGGCTCCTTGACCTTGCCT 411
|||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||
Sbjct 387 CCTAGTGGTTGTGTTCCGGGAGGGAATGCTTTACAGAGGCAAGGCTCCTTGACTTTGCCT 446
Query 412 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGAAATACCTGAATTCGAAAGAAGGT 471
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 447 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGCAATACTTGAATTCGAAAGAAGGT 506
Query 472 AGTAATGGGAATACTGGAACGGATGCGCTTGAGAGGCAACAGACTTTAGGGGAAATGACT 531
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 507 AGCAATGGGAATACTGGAACGGATGCGCCTGAGAGGCAACAGACTTTAGGGGAAATGACT 566
Query 532 CTGGAAGATTTCTTACTCCGTGCTGGCGTTGTTAAAGAAGATAATACTCAGCAGAACGAA 591
||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 567 CTGGAGGATTTCTTGCTCCGTGCTGGCGTTGTTAAAGAAGATAATGCTCAGCAGAACAAA 626
Query 592 AACAGTAGTAGCGGGTTTTATGCTAACAACGGTGCTGCTGGTTTGGAGTTTGGATTTGGT 651
|||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 627 AACAGTAGTACCGGGTTTTATGCTAACAACAGTGCTGCTGGTTTGGGGTTTGGATTTGGT 686
Query 652 CAGCCGAATCAAAACAGCATATCGTTCAACGGGAACAATAGTTCTATGATCATGAATCAA 711
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 687 CAGCCGAATCAAAACAGCATATCGTTCAACGGCAACAATAATTCTATGATCATGAATAAA 746
Query 712 GCACCTGGTTTAGGCCTCAAAGTTGGTGGAACCATgcagcagcagcagcagccacatcag 771
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 747 GCACCTGTTTTAGGCCTCAAAGTTGGTGGAACCAT------GCAGCAGCAGCCACATCAG 800
Query 772 cagcagttgcagcagcCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAGCGAAT 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 801 CAGCAGTTGCAGCAGCCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAACGAAT 860
Query 832 GTAACATTTGCGGCGCCTGTAAATATGGTCAACAGGGGTTTATTTGAGACTAGCGCAGAT 891
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 861 GTAACATTTGCAGCGCCTGTGAATATGGTCAACAGGGGTTTATTTGAGACTGGCGCAGAT 920
Query 892 GGTCCAGCCAACAGTAATATGGGAGGAGCAGGGGGTACTGTTACAGCTACTTCTCCTGGG 951
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 921 GGTCCAGTCAACAGTAATATGGGAGGAGCAGGGGCCACTGTTACAGCTACTTCTCCTGGG 980
Query 952 ACGAGCAGTGCAGAAAACAATACTTGGTCATCACCAGTTCCTTACGTGTTTGGTCGGGGA 1011
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
Sbjct 981 ACGAGCAGTGCAGAAAACAATGCTTGGTCATCACCAGTTCCTTATGTGTTTGGTCGGGCA 1040
Query 1012 AGAAGAAGCAATACGGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1071
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AGAAGAAGCAATACCGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1100
Query 1072 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAACAGGCTTATACCTTGGAACTGGAA 1131
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1101 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAGCAGGCTTATACCTTGGAACTGGAA 1160
Query 1132 GCTGAGATTGAAAGTCTCAAGCTAGTGAATCAAGATTTGCAGAAGAAACAGGCTGAAATA 1191
|| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1161 GCCGAGATTGAAAGTCTCAAGCAAGTGAATCAAGATTTGCAGAAAAAACAGGCTGAAATT 1220
Query 1192 ATGAAAACCCATAATAGTGAGGTAA 1216
|||||||| || ||||||||| |||
Sbjct 1221 ATGAAAACTCAGAATAGTGAGCTAA 1245
Score = 385 bits (208), Expect = 6e-106
Identities = 276/306 (90%), Gaps = 15/306 (5%)
Strand=Plus/Plus
Query 1238 CTAAAGGAATTTTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1297
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CTAAAGGAATCGTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1301
Query 1298 CTTACCGGTCCGTGGTAAGAAGGTGAAGTCAAAGCAAGAAGAACCTGCTAATGTAATACA 1357
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1302 CTTACCGGTCCGTGGTAAAAAGGTGAAGTCAAAGCAAGAAGAGCCTGCTAATGTAATACA 1361
Query 1358 GGACCACTCAAAAGGAAGACACTGGGAGAGTAATATGTAATAGAAGATAGTGCTACTGTA 1417
|||| ||||| |||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 1362 TCACCA---AAAAG-AAGACATTGGGAGACTAATATGTAATAGATGATAGTGCTACTGTA 1417
Query 1418 CAGGAGAAATTACAGAGACGCTTACAATGTAGAAATCTTTTGAGCTGAATTTAACTAAGA 1477
||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 1418 CAGGAGAGATTACAGAGACTCTTACAATGTAGAAATCTTT-GAGCTGAATCTAACTAAGA 1476
Query 1478 GTGCAGTCTGTGTAGAGTATGAGA-GCTTTCAATATGAATTCATAATTTTCATAAACATA 1536
|||| | | ||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct 1477 GTGC--T------A-AGTATCAGAAGCTTTCAATATGAATTCATAATTTTCATATATATA 1527
Query 1537 TGTAAA 1542
||||||
Sbjct 1528 TGTAAA 1533
> Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1
Length=2177
Score = 111 bits (60), Expect = 1e-23
Identities = 81/90 (90%), Gaps = 5/90 (6%)
Strand=Plus/Minus
Query 1501 AGCTTTCAATATGAATTCATAATTTTCATAAACATATGTAAAACTTTCAGATTTAGCTAT 1560
|||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct 2177 AGCTTTCAATATGAATTCATAATTTTCATATATATATGTAAA-CTTTCCTATTTAGCTAT 2119
Query 1561 AGAGAAGATGTGACT-AACTCAGAAAGAAA 1589
||||| ||||||| ||||||||||||||
Sbjct 2118 AGAGA---TGTGACTTAACTCAGAAAGAAA 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5