BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49730.1
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1 3247 0.0
Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1 71.3 3e-11
> Ahg474105 jgi|Araly1|474105|fgenesh2_kg.1__4059__AT1G49730.1
Length=2177
Score = 3247 bits (1758), Expect = 0.0
Identities = 2068/2212 (93%), Gaps = 44/2212 (2%)
Strand=Plus/Plus
Query 1 GTCACTTGTCAGTGAGTATACAAAACAATACAC--AGAG-CCTCGCATGTCATATTCACA 57
|||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||
Sbjct 1 GTCACTTGTCAGTGAGTATACAAAACTATACACAGAGAGCCCTCGAATGTCATATTCACA 60
Query 58 CAGGGACCTTCCGTTAAACTCCTTTTTTATAAtctcgttctctcttctctctt-tctctc 116
|||||||||||||||||||||| ||||||||| || |||| ||||||||| ||||||
Sbjct 61 CAGGGACCTTCCGTTAAACTCC-TTTTTATAA--TC--TCTC-ATTCTCTCTTCTCTCTC 114
Query 117 tctGGTTGCTCTTGGCCATGGTTGTGAATAGTCAAGCTTTCTTGTTGGCATTAATTGCAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCTGGTTGCTCTTGGCCATGGTTGTGAATAGTCAAGCTTTCTTGTTGGCATTAATTGCAT 174
Query 177 TACTTGCTACCCAATTGCCTTCACTAATGGCTGCAGATTGTCCATTAGATTTCAGTGGAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 175 TACTTGCTACCCAATTGCCTTCACTAATGGCTGCAGATTGTCCATTAGATTTCAGTGCAT 234
Query 237 CAAATTTCACTCTAGTAGCTACTGTGTGCTCCAACATAACCAACAGAGGCAAATGTTGCC 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAAATTTCACTCTAGTAGCTTCTGTGTGCTCCAACATAACCAACAGAGGCAAATGTTGCC 294
Query 297 GCTACATGAACGCTTTTGTTGCGGTGTCCGTGGCTCGTTACGCGAACTTGTCAACTAATC 356
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 295 GCTACATGAACGCCTTTGTTGCGGTATCTGTGGCTCGTTACGCGAACTTGTCAACTAATC 354
Query 357 TTGGAGTCACATCAGATTTATCTGAAACCTGCATTGCTTCCATCTCTAGAGCCATGGAGG 416
|||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 355 TTGGAGTCACGTCAGATTTATCTGAAATCTGTATTGCTTCCATCTCTAGAACCATGGAGA 414
Query 417 GCTACGGAGTCTCGAGAAACGCCACTAGTTTCTGCGGTTTGGGAACCAAGATCCTTGTTA 476
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GCTATGGAGTCTCAAGAAATGCCACTAGTTTCTGCGGTTTGGGAACCAAGATCCTTGTTA 474
Query 477 AGTATGACTGTGACGGTCGAACCACTGTTACACAAATGCATCAGTCTCCGGGATTTGGAC 536
|||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 475 AGTATGACTGCGAAGGTCGAACCACTGTAATACAAATGCATCAGTCTCCGGGATTTGGAC 534
Query 537 ATGTTTCAAGAAACTGCAGACTCCCATTTTCGCCGGGACACCAATGCAGAAAGTGTTTGA 596
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 535 ATGTTTCTAGAAACTGCAGACTCCCATTTTCTCCGGGACACCAATGCAGGAAGTGTTTGA 594
Query 597 ACTCTGGCATCACTTACCTTCGTAATCTCATAGGTGCAGAGACTAATAACATTAC-TCTG 655
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 595 ATTCTGGTATCACTTACCTTCGTAATCTCATAGGTGCAGAGACTAATAACATTACAT-TG 653
Query 656 TGTACTTGTCGTGATGCGACTTATGCTACATTAGCAAGCCGAATAGACGATACATCAGCT 715
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 654 AGTACTTGTCGTGACGCGACTTATGCTACATTAGCAAGCCGAATTGACGATGCATCGGCT 713
Query 716 CTTGAACTCCTTAGTTGTTTCTTTCAAGTGACAGAGCTTAACATTCCTTCAGAGTCATTT 775
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 714 CTTGAACTCCTTGGCTGTTTCTTTCAAGTGACAGAGCTTAGCATTCCTTCAGAGTCATTT 773
Query 776 TCACCAGTGGCAAGTCCAGAACCTTCTCCAAGCACGGTTGGTGGTATTAGCCCAAGCAAC 835
|||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 774 TCACCATTGGCAAGTCCAGAACCTTCTCCAAGCACAGTTGGTGCTATTAGCCCAAGCAAC 833
Query 836 AGTGATTCTCAAATGACTACAAGTAGAAGCACCAATCCATATCACTTAACAATGGTTCCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGTGATTCTCAAATGACTACAAGTAGAAGCACCAATCCATATCACTTAACAATGGTTCCA 893
Query 896 ACCATTGGGATTGTTGTTACAGCTGTTGCTCTTACGATGCTTGTAGTCTTGGTAATTCTT 955
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 894 ACCATTGGGATTGTTGTTACAGCTGTTGCTCTTACGCTGCTCGTAGTCCTGGTAATTCTT 953
Query 956 ATCCGTAGAAAGAACCGGGAACTGGATGAATCTGAGAGCTTGGATA-GAAAGTCAACAAA 1014
||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct 954 ATCCGTAGAAAAAACCGGGAACTCGATGAATCTGAGAGTTTGGATAAGAA-GTCAACAAA 1012
Query 1015 ATCAGTTCCTTCTTCCCTT-CCTGTATTCAAGATTCATGAAGATGATTCTTCCTCAGCTT 1073
||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1013 ATCAGTTGCTTCTTCC-TTGCCTGTATTCAAGATTCATGAAGATGATTCTTCTTCAGCTT 1071
Query 1074 TCAGAAAGTTCAGCTACAAGGAAATGACAAATGCAACAAATGATTTCAACACGGTTATCG 1133
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1072 TCAGAAAATTCAGCTACAAGGAAATGACAAATGCAACGAATGATTTCAACACGGTGATTG 1131
Query 1134 GTCAGGGAGGTTTTGGTACTGTTTACAAAGCCGAGTTCAACGATGGTCTGATTGCAGCGG 1193
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1132 GTCAGGGAGGTTTTGGTACTGTTTACAAAGCCGAGTTCAGCGACGGTCTGATTGCAGCGG 1191
Query 1194 T-AAAAAAGATGAACAAAGTCTCTGAACAAGCTGAACAAGATTTTTGTAGAGAGATAGGG 1252
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 TGAAAAAA-ATGAACAAAGTCTCTGATCAAGCTGAACAAGATTTTTGTAGAGAGATAGGG 1250
Query 1253 CTTTTAGCTAAGCTGCATCACCGTAACCTCGTTGCTTTGAAAGGCTTTTGCATCAACAAG 1312
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1251 CTTTTAGCTAAGCTGCATCACCGTAACCTTGTTGCTTTGAAAGGCTTTTGCATTAACAAG 1310
Query 1313 AAAGAAAGGTTCTTGGTCTACGACTATATGAAAAATGGCAGCTTAAAAGATCACTTACAT 1372
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 1311 AAAGAAAGGTTCTTGGTCTATGACTATATGGAAAATGGCAGCTTAAAAGATCATTTACAT 1370
Query 1373 GCCATTGGAAAGCCTCCACCTAGTTGGGGAACAAGAATGAAAATTGCAATTGATGTGGCA 1432
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GCCACTGGAAAGCCTCCACCTAGTTGGGGAACAAGAATGAAAATTGCAATTGATGTGGCA 1430
Query 1433 AATGCTTTGGAATATCTTCATTTCTACTGTGATCCTCCTCTCTGTCATAGAGATATTAAA 1492
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1431 AATGCTTTGGAATATCTTCATTTCTACTGTGATCCTCCTCTGTGTCATAGAGACATTAAA 1490
Query 1493 TCAAGCAATATATTACTCGATGAGAACTTCGTCGCTAAGCTTTCAGATTTTGGCCTTGCA 1552
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1491 TCAAGCAATATATTACTCGATGAGAACTTCGTTGCTAAGCTTTCAGATTTTGGCCTTGCA 1550
Query 1553 CATTCGTCTAGAGATGGCTCTGTTTGCTTTGAGCCTGTGAATACCGATATCCGTGGAACT 1612
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1551 CATTCGTCTAGAGATGGCTCTGTTTTCTTTGAGCCTGTGAATACCGATATCCGTGGAACT 1610
Query 1613 CCAGGTTATGTAGATCCGGAATATGTAGTAACGCAAGAGTTGACAGAGAAGAGTGATGTG 1672
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1611 CCAGGTTATGTAGATCCAGAATATGTAGTAACGCAAGAGCTGACAGAGAAGAGTGATGTG 1670
Query 1673 TACAGCTACGGAGTTGTGTTGCTGGAGCTCATAACCGGGAGAAGAGCAGTTGATGAAGGT 1732
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1671 TACAGCTACGGAGTTGTGTTGCTGGAGCTCATAACCGGGAGAAGAGCAGTCGATGAAGGC 1730
Query 1733 AGGAACCTTGTGGAAATGTCTCAGCGGTTTTTGTTGGCGAAATCAAAACACCTCGAGTTG 1792
| |||||||||||||||||||||||| ||||||| |||||||||| |||| || |||
Sbjct 1731 AAGAACCTTGTGGAAATGTCTCAGCGAAATTTGTTGACGAAATCAAACCACCGGGATTTG 1790
Query 1793 GTAGACCCGAGAATCAAAGACTCTATTAATGATGCTGGAGGAAAACAACTTGATGCAGTT 1852
||||||||||||||||||||||| ||| ||||||||||| ||||| | ||||| ||||||
Sbjct 1791 GTAGACCCGAGAATCAAAGACTCCATTGATGATGCTGGAAGAAAAGAGCTTGAAGCAGTT 1850
Query 1853 GTGACGGTTGTGAGATTGTGTACCGAGAAAGAAGGCCGGTCTAGGCCATCAATTAAGCAA 1912
||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1851 GTGGCGGTTGTGAGATGGTGTACCGAGAAAGAAGGCCGATCTAGGCCATCGATTAAACAA 1910
Query 1913 GTCTTGAGGCTGTTGTGTGAAAGCTGTGATCCGGTGCATAGCGCATTTGCTAAAGCGGTT 1972
||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1911 GTCCTGAGGCTGTTGTGTGAAAGCTGTGATCAGTTGCATAGTGCATTTGCTAAAGCGGTT 1970
Query 1973 GAAGAAGAGATAGGCTGGGATAGTAGGAAGAGAAGCAATTTGAGAATTCAAAGAGGTGAT 2032
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1971 GAGGAAGAGATAGGCTGGGATAGTAGGAAGAGAAGCAATTTGAGAATTCAAAGAGGCGAT 2030
Query 2033 TCCCGGATCTTTGGTCCATCGTCTAGTACTACTTCCAGGTCACATTACAGCCGGAGTTTA 2092
|||||||| | || | | || |||| | | ||||||||| ||||||
Sbjct 2031 TCCCGGAT-TA------AT-G----G-ACAACTT--A----A--TTACAGCCGTAGTTTA 2069
Query 2093 CCTCACTCTCCAATTAACGGATTTTCTTTCTGAGTTA-GTCACATCTTCTCTATAGCTAA 2151
||||||||||||||||| ||| ||||||||||||||| ||||||||| || ||||||||
Sbjct 2070 CCTCACTCTCCAATTAATGGACTTTCTTTCTGAGTTAAGTCACATCT-CT--ATAGCTAA 2126
Query 2152 ATCTGAAAGTTTTACATATGTTTATGAAAATTATGAATTCATATTGAAAGCT 2203
|| |||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 2127 ATAGGAAAGTTT-ACATATATATATGAAAATTATGAATTCATATTGAAAGCT 2177
> Ahg474101 jgi|Araly1|474101|fgenesh2_kg.1__4055__AT1G49720.1
Length=1533
Score = 71.3 bits (38), Expect = 3e-11
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 2162 TTTACATATGTTTATGAAAATTATGAATTCATATTGAAAGCT-CTCATACT 2211
||||||||| | |||||||||||||||||||||||||||||| || |||||
Sbjct 1533 TTTACATATATATATGAAAATTATGAATTCATATTGAAAGCTTCTGATACT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84217531695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5