BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49740.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1 2139 0.0
> Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1
Length=1603
Score = 2139 bits (1158), Expect = 0.0
Identities = 1396/1503 (93%), Gaps = 47/1503 (3%)
Strand=Plus/Plus
Query 1 ACCGACTCACGCGCACTTCCGTTCACTCTATTTTTATCCTTAAAATCCTCTCATTGTATT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1 ACCGACACACGCGCACTTCCGTTCACTCTATTTTTATCCTTAAAATCCTCTCA-T-TA-T 57
Query 61 TACTTTATTTTATTTGT-TTCTTAGAATCT-TTTTCACGCAAATGCAAACCACCAACAAA 118
| | ||| || |||| | || || || | |||||||||||||||||||||||||| ||
Sbjct 58 T-CATTA-TTCATTT-TATT-TT---ATTTGTTTTCACGCAAATGCAAACCACCAACCAA 110
Query 119 TCTATATTCTAGCATGATGATGAAGTAGCTACTTGcttcttcttcttcttcttcttAAAT 178
|||| | |||| ||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 111 TCTA-A-TCTAACATCATGATGAAGTAGCTTCTTG---CTTCTTCTTCTTCTTCTTAAAT 165
Query 179 TTTGGGGTTTTTACTTTTTGGTGAAGACAGCCATGTTTCAAAGATTATTACTCTTCCTTC 238
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 166 TTTTGGGTTTTTACTTTTTGGCGAAGATAGCCATGTTTCAAAGATTATTACTCTTCCTTC 225
Query 239 TCATTGCTCTTCTGCTCCAATCTTCTTTCCTTTTAGAGATTTCCTCTGCTCTCAAGGAAG 298
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TCATAGCTCTTCTGGTTCAATCTTCTTTCCTTTTAGAGATTTCCTCTGCTCTCAAGGAAG 285
Query 299 GAAAAACATGTATAACAAACAGCAACTGTGACGCTGGATTACACTGCGAAACATGTATAG 358
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GAAAAACATGTATAGCAAACAGCAACTGTGACGCTGGATTACACTGCGAAACATGTATAG 345
Query 359 CCAACACTGATTTTAGACCTAGATGCTCCAGAACCCAACCCATCAACCCCATCACCAAGG 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 346 CCAACACTGATTTTAGACCTAGATGCTCCCGAACCCAACCCATCAACCCCATCTCCAAGG 405
Query 419 CAAAGGGGTTGCCTTTTAACAAGTATTCATGGTTAACCACACACAACTCTTTTGCTCGTT 478
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 406 CAAAGGGATTGCCTTTCAACAAGTATTCATGGTTAACCACACACAACTCCTTTGCTCGTT 465
Query 479 TGGGGGAAGTATCACGGACCGGTTCTGCT-ATTTTGGCTCCTACTAACCAGCAAGATTCA 537
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 466 TGGGGGAAGTATCACGGACCGGTTCTG-TGATTTTGGCGCCTACTAACCAGCAAGATTCA 524
Query 538 ATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATGCTCGACATGTATGACTTCCAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 525 ATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATGCTCGACATGTATGACTTCGAA 584
Query 598 AACGATATCTGGCTTTGCCATTCTTTCGATGGAACATGTTTCAATTTCACCGCTTTTCAA 657
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 585 AACGATATCTGGCTTTGCCATTCTTTCGACGGAACATGTTTCAATTTCACAGCTTTTCAA 644
Query 658 CCGGCTATTAACATTTTAAGGGAGTTTCAAGTGTTTCTAGAGAAGAACAAAGAGGAAGTT 717
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 645 CCGGCGATTAACATTTTAAGGGAGTTTCAAGTGTTTCTAGAGAAGAACACAGAGGAAGTT 704
Query 718 GTAACGATTATCATCGAAGATTATGTGAAATCGCCTAAAGGTCTCACAAAAGTGTTTGAT 777
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 705 GTAACGATTATCATCGAAGACTATGTGAAATCTCCTAAAGGTCTCACAAAAGTGTTTGAT 764
Query 778 GCGGCTGG-CTTACGAAAGTTCATGTTTCCAGTATCTAGAATGCCCAAAAATGGAGGGGA 836
|||||||| || |||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 765 GCGGCTGGGCT-ACGAAAGTTCATGTTTCCGGTAGCTAGAATGCCCAAAAATGGAGGAGA 823
Query 837 CTGGCCAAGGCTTGATGACATGGTGCGAAAAAACCAACGGTTGCTAGTTTTTACATCCGA 896
|||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||
Sbjct 824 TTGGCCAAGGCTTGACGACATGGTTCGACAAAACCAACGGTTGCTTGTTTTTACATCTGA 883
Query 897 TTCACATAAAGAAGCAACCGAAGGGATCGCCTATCAATGGAAGTATATGGTTGAGAATCA 956
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 884 TTCACATAAAGAAGCAACCGAAGGGATCGCATATCAATGGAAGTATATGGTTGAGAATCA 943
Query 957 ATATGGAAATGGAGGGTTGAAGGTAGGAGTGTGTCCAAATAGAGCTCAATCAGCGCCAAT 1016
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 944 ATATGGAAATGGAGGACTGAAGGTAGGAGTGTGTCCAAATAGAGCTCAATCAGCACCGAT 1003
Query 1017 GAGCGATAAATCAAAATCTCTTGTTCTTGTGAACCATTTCCCTGATGCTGCGGATGTGAT 1076
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1004 GAGCGATAAATCGAAATCTCTTGTTCTTGTGAACCATTTCCCTGATGCTGCGGATTTGAT 1063
Query 1077 AGTAGCATGTAAGCAAAACTCAGCTTCTCTTCTTGAATCCATAAAGACATGTTACCAAGC 1136
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1064 AGTAGCATGTAAACAAAACTCTGCTTCTCTTCTTGAATCCATCAAGACATGTTACCAAGC 1123
Query 1137 CGCGGGACAGCGATGGCCTAACTTCATAGCAGTCGATTTCTACAAGAGAAGCGATGGTGG 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CGCAGGACAGCGATGGCCTAACTTCATAGCAGTCGATTTCTACAAGAGAAGCGATGGTGG 1183
Query 1197 AGGAGCTCCGCAAGCGGTTGATGTTGCGAATGGCAATTTGATATGCGGTTGCGATAACTT 1256
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AGGAGCTCCCCAAGCAGTTGATGTTGCGAATGGCAATTTGATATGCGGTTGCGATAACTT 1243
Query 1257 TGCAGCGTGCAAGGCTGACGGCAAATGTGGATAGTAAGAAAGACTGAGCCACCAGAAGCA 1316
|||| ||||||||| ||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 1244 TGCAACGTGCAAGGGTGACGGCAAGTGTGGATAGCAAAAAAGACTGAGCCACCAGAAGCA 1303
Query 1317 ACTCCCATAACCAAA-GGCTTTCTGCGTTTGTTGTCACCTTTGTGTCATCTTTTCCATAA 1375
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1304 ACTCCCATAACCAAAAGGCTTTCTGCGTTTGTTGTCACCTTTGTGTCATCTCTTCCATAA 1363
Query 1376 AGTTTTA-GCTA---GTGTAGTAACGGTTAGTTTTTGTTTTAGATTATTTAGAGATTAGT 1431
||||| | ||| |||||||||||||||||||||||||| | | | |
Sbjct 1364 AGTTTGAAGCTTTTCGTGTAGTAACGGTTAGTTTTTGTTTT---T------G---T-A-- 1408
Query 1432 ACTGTACTGGTTAGTTTCATTACTCTAAATTTCCTAATCATATATGAACTAGTCACCGAA 1491
| || | |||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1409 A-TG----G-TTAGTTTCATTATTCTAAATTTCCTAATCATATACGAACTAGTCACCGAA 1462
Query 1492 TAA 1494
|||
Sbjct 1463 TAA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5