BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49770.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337131 jgi|Araly1|337131|fgenesh1_pg.C_scaffold_1003696 832 0.0
> Ahg337131 jgi|Araly1|337131|fgenesh1_pg.C_scaffold_1003696
Length=885
Score = 832 bits (450), Expect = 0.0
Identities = 519/553 (94%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 1 ATGACTAATGCTCAAGAGTTGGGGCAAGAGGGTTTTATGTGGGGCATATCCAATTCTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTAATGCTCAAGAGTTGGGGCAAGAGGGTTTTATGTGGGGCATATCCAATTCTGAT 60
Query 61 GATTCCGGAGGTGGTTGCAAAAGAATCGAGAAAGAACCGCTTCCATCACATCCGTCTCAT 120
||||||||||||||||||| | ||||||||||| || ||| |||||| || || ||||||
Sbjct 61 GATTCCGGAGGTGGTTGCAGAGGAATCGAGAAACAATCGCCTCCATCGCAACCTTCTCAT 120
Query 121 CCGTCGCCAGAGATCCAGACTACGACGGTTaaaaa-gggaaaaaagagaacgaaaagaaa 179
||||||||| ||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct 121 CCGTCGCCAAAGATCCAGACTGCGACGGTGAAAAAGGGGAAAAAA-AGGACGAAAAGAAA 179
Query 180 tgataaaaaccatgaagaagaaTCACCTGATCATGAAATACATATATGGACCGAAAGAGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATAAAAACCATGAAGAAGAATCACCTGATCATGAAATACATATATGGACCGAAAGAGA 239
Query 240 AAGGAGAAAGAAGATGAGGGACATGTTTTCTAAATTACATGCTTTGCTTCCCCAACTTCC 299
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AAGGAGAAAAAAAATGAGGGACATGTTTTCTAAATTACATGCTTTGCTTCCTCAACTTCC 299
Query 300 TCCTAAGGCAGACAAATCAACAATTGTAGATGAAGCAGTGAGTTCAATCAAATCCCTTGA 359
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 300 CCCTAAGGCAGACAAATCAACGATAGTAGATGAAGCAGTGAGTTCCATCAAATCCCTTGA 359
Query 360 ACAAACTTTGCAAAAACTTGAAATGCAAAAGCTTGAGAAGCTTCAGTATTCTTCTGCCTC 419
|||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 360 ACAAACTTTGCAAAAACTCCAAATGCAAAAGCTCGAGAGGCTTCAGTATTCTTCTGCCTC 419
Query 420 AACAAACACAACTCCTACTACAACTTTTGCTTATGCTCCATCATCATCCTCTTCTCCAAC 479
||||||||||||||||||||||||||| ||||||| |||||| || || |||||||||||
Sbjct 420 AACAAACACAACTCCTACTACAACTTTGGCTTATGATCCATCTTCTTCTTCTTCTCCAAC 479
Query 480 AGCTCTCCTCACACCAATATCAAACCATCCCATAGACGCCACCGCAACAGATTCTTACCC 539
| |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 480 AACTCTCCTCACACCAATCTCAAACCATCCCATAGGCGCCACCGCAGCAGATTCTTACCC 539
Query 540 TCGCGCAGCTTTC 552
|||||||||||||
Sbjct 540 TCGCGCAGCTTTC 552
Score = 496 bits (268), Expect = 2e-139
Identities = 313/335 (93%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 594 CCTGCCTTACCCTTGTAATGATCCGATCGTGAATTTCGATACTTGGTCCTCACGTAACGT 653
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 552 CCTGCCTTACCCTTGTAATGATCCGATCGTGACTTTCGATACTTGGTCCTCACGTAACGT 611
Query 654 GGTGCTGACTATCTGTGGGAATGAAGCTTTCTTCAATTTGTGTGTCCCTAAACACAAACC 713
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 612 CGTGCTGAATATCTGTGGAAATGAAGCATTCTTCAATTTGTGTGTCCCTAAACACAAATC 671
Query 714 AGGGGTTTTCACTTCTGTTTGTTACTTGTTTGAGAAGTACAACATGGAGGTTTTGTTTGC 773
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 AGGGGTTTTCACTTCTGTTTGTTACTTGTTTGAGAAGTATAACATGGAGGTTTTGTTTGC 731
Query 774 TAATGTCTCCTCTAATGTTTTCTGGAGCACCTACGTGATCCAAGCACAGGTAAATCCGAG 833
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 732 TAATGTCTCCTCTAATGTTTTCCGGAGCACCTACGTGATCCAAGCACAGGTAAATCCGAG 791
Query 834 TTGTGAGAATCAGTTACTGGGAAATGG-TCTTGGAGTTGTAGACGTTTTCAAGCAAGTTT 892
|| |||| ||||||| |||||||||| | ||||||| | ||| ||||||||||||||
Sbjct 792 TTACGAGAGTCAGTTATTGGGAAATGGGT-TTGGAGTAGGGGACATTTTCAAGCAAGTTG 850
Query 893 CTCAAGAACTGGTGTTATATTTTTCATCTCTATAA 927
||||||||||||||||||| ||||||||| ||||
Sbjct 851 CTCAAGAACTGGTGTTATACCTTTCATCTCCATAA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5