BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49800.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474111 jgi|Araly1|474111|fgenesh2_kg.1__4065__AT1G49800.1         503    6e-142


> Ahg474111 jgi|Araly1|474111|fgenesh2_kg.1__4065__AT1G49800.1
Length=456

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 398/455 (87%), Gaps = 24/455 (5%)
 Strand=Plus/Plus

Query  61   ATCATGGTGATGGCAAAGAACCTTACCAAGTTCTACGTAGTGTTTCTCGTTGTTCTGATG  120
            |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| 
Sbjct  1    ATCATGGTGATGGCTAAGAACCTTACCAAGTTCTACGTAGCGTTTCTCGTTATTCTGATA  60

Query  121  ATGGTGGTATCGCTATTGCTAGCCATTGAAGGACGACCGGTCAAGGATAGTTCGAGATCG  180
            ||||||| |||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   ATGGTGGGATCGGTGTTACTAGCCATTGAAGGACGACCGGTCAAGGATGGTTCGAGATCG  120

Query  181  TTGACCCAAATGAGAGATTCATCTATGTTCAATGGAAGCGTTATAATGTCCTCATTTAAA  240
             |||| ||| |||||||||||||| |||| ||||||||||   ||||||| || ||||||
Sbjct  121  ATGACACAATTGAGAGATTCATCTGTGTTTAATGGAAGCG---TAATGTCTTCGTTTAAA  177

Query  241  CCAGTTGAGTCTTCTGTAAAAGATTTATCGTGGTTAGCCACAGTGAAACAGTCCGGGCCA  300
            ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  178  CCAGTCGAGTCTTCTGTACAAGATTTGTCGTGGTTAGCCACAGTGAAACAGTCCGGGCCA  237

Query  301  AGCCCAGGGGTTGGACATCATCGAGCCAAGGGGTACAAAATGTTTGGACGAGCCAATGAT  360
            ||||||||| |||| ||||   |||||||||| ||||| ||||||||||||||||| |||
Sbjct  238  AGCCCAGGGATTGGGCATC---GAGCCAAGGGCTACAATATGTTTGGACGAGCCAAAGAT  294

Query  361  TCTGGTCCTAGTCCTGGTGTTGGACACTAGATATAACAAATTAATCTCATGAACTGAAAT  420
            ||||||||||||||||||||||||||||| |  |||||||     ||| |||| | ||||
Sbjct  295  TCTGGTCCTAGTCCTGGTGTTGGACACTAAAG-TAACAAAC----CTCGTGAATTAAAAT  349

Query  421  TATAGATAATGCAGATACAACTTTACCACATGTTCAATAGCCTCTAAGATGTAATCTTCT  480
            |||||||||||||||| ||  | |      | |  ||||||||||||||||||||||| |
Sbjct  350  TATAGATAATGCAGAT-CA--TGT------T-T--AATAGCCTCTAAGATGTAATCTTTT  397

Query  481  TT-CCATTGTTTATGTTTATCTTCTTTACTTCTAC  514
            || ||||||||||||||||||| ||||||||||||
Sbjct  398  TTTCCATTGTTTATGTTTATCTCCTTTACTTCTAC  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5