BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49810.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705 2013 0.0
Ahg929841 jgi|Araly1|929841|scaffold_302298.1 963 0.0
> Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705
Length=1272
Score = 2013 bits (1090), Expect = 0.0
Identities = 1207/1265 (95%), Gaps = 2/1265 (0%)
Strand=Plus/Plus
Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTGATCATCTTCGAGGAGTCTTTATCATTT 60
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTCATCATCTTCGAGGAGTGTTTATCTTTT 60
Query 61 AGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGAG 120
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGAG 120
Query 121 ACTTCTGTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGCCAAATA 180
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACATCTCTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGTCAAATA 180
Query 181 GTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTT 240
|||||||| ||||| || || ||||| |||||||| |||||||||| ||||||||||||
Sbjct 181 GTGTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCAAGGATTC 240
Query 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGATTGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGATGATTGGT 300
Query 301 TTCGCGACCTTTTTCCTCAGCTCTGTTCTTGACAACCTAACATCTACTATTGTAATGGTG 360
|| |||||||||||||||||||| ||||||||||| |||||| ||||| |||| |||||
Sbjct 301 TTTGCGACCTTTTTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTTGTTATGGTT 360
Query 361 TCGCTACTGAGAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAGGAGCAGTTGTG 420
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TCGCTACTGAGAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGGAGCAGTTGTG 420
Query 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTACTACAACTATG 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTACTACAACTATG 480
Query 481 CTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCtttttttACCTTCA 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTTTTTACCTTCA 540
Query 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTACATGGAATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTAAATGGAATG 600
Query 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCGTAGTGCTCCAAGAGGAAAG 660
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCATACTGCTCCAAGAGGAAAG 660
Query 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTGTTTAAGTCATTAACC 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTATTTAAGTCATTAACC 720
Query 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780
Query 781 GTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTCCACATGCTTTGTCTCGG 840
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 GTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTCCACATGCTTTGTCTCGG 840
Query 841 ATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATTTTGCTATCTATGAGCAGTCTTGAT 900
|||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 841 ATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATTTTGTTAGCTATGAGCAGTCTTGAT 900
Query 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960
Query 961 CTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAGATAATGTCCCATTGGTTGCG 1020
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGATAATGTCCCATTGGTTGCA 1020
Query 1021 GCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 GCAACTATGGGGATGTATGATCTCTCAAGATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080
Query 1081 ATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGGTCTGCTGCTGGAGTA 1140
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 ATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGATCTGCTGCTGGAGTA 1140
Query 1141 ATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACTTTCGTAAGGTGAGCGGTTTT 1200
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1141 GCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATTTTCGTAAGGTGAGTGGTTTT 1200
Query 1201 GCTTTTGCGGGTTTTACTGCTGGTATCATGACTTACCTCGCGGTTCACAA-CT-TCCCTC 1258
|||||||| ||||||||||| |||||| |||||||||| | ||||||| | || |||||
Sbjct 1201 GCTTTTGCTGGTTTTACTGCGGGTATCGTGACTTACCTGGTGGTTCACTATCTCTCCCTG 1260
Query 1259 TTTAA 1263
|||||
Sbjct 1261 TTTAA 1265
> Ahg929841 jgi|Araly1|929841|scaffold_302298.1
Length=1772
Score = 963 bits (521), Expect = 0.0
Identities = 1034/1278 (81%), Gaps = 50/1278 (4%)
Strand=Plus/Plus
Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTG-ATCATCTTCGAGGAGTCTTTATCATT 59
|||||||||||||||||||||||||| | | ||||||||||| ||||||||| | ||
Sbjct 446 ATGGCATTGTTGTTTGGAATAGGATACG-CCGGAATCATCTTCGAAGAGTCTTTAGCTTT 504
Query 60 TAGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGA 119
|| |||||| ||||||| ||| |||||||| || ||||||||||||||||| ||||| |
Sbjct 505 TAATAAAAGTGGAATAGGACTGTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGG 564
Query 120 GACTTC-TGTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGCC 175
| || | | | ||||| | | |||||| |||||||| ||||| || |||||||||
Sbjct 565 GGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGTG 623
Query 176 AAATAGTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAG 235
|||| || || | | |||| || ||||||||||||||||| ||| |||||||||| ||||
Sbjct 624 AAATCGTATTTTTCTTGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCAAG 683
Query 236 GATTTAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGA-TACTTTTATGGGT 293
|||||||| |||||||||| |||| | || || |||| || |||| | |||||||||||
Sbjct 684 GATTTAAGTTGGTTACAGACAGTATCACCA-CTCGGAAGCCAAAGACT-CTTTTATGGGT 741
Query 294 GATTGG-TTTCGCGACCTTT-TTCCTCAGCTCTG-TTCTTGACAACCTAACATCTACTAT 350
| |||| ||| | || |||| || ||||| || | |||| ||||| || || ||||| ||
Sbjct 742 GGTTGGCTTT-GTGA-CTTTCTTTCTCAGTTC-GATTCTAGACAATCTGACCTCTACCAT 798
Query 351 TGTAATGGTGTCGCTACTGA-GAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAG 409
||| ||||| || |||| | ||| ||| |||||| |||||| |||||||||||| |||
Sbjct 799 TGTCATGGTTTCTTTACTAAGGAA-ACTGGTTCCTCAATCAGAGTACCGCAAACTTCTAG 857
Query 410 GAGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTA 469
|||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 858 GAGCTGTTGTGGTTATAGCAGCAAATGCTGGAGGAGCATGGACTCCAATTGGTGATGTTA 917
Query 470 CTACAACTATGCTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCttt 529
||||||||||||||||||| ||||| || ||| |||| || ||||||| || |||||
Sbjct 918 CTACAACTATGCTATGGATTCATGGTCAGATAACAACCTTGCCGACTATGCAGGGCCTTT 977
Query 530 ttttACCTTCAGC-GATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAG 588
|| ||||||| || | ||||||||| ||||||||| || |||||||| ||||||||||||
Sbjct 978 TTATACCTTCGGCTG-TTTCTCTTGCTGTTCCACTAGCCCTCATGTCCTTGACCAGTGAG 1036
Query 589 GTACATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATG-ATCGTAGT- 645
||| |||||| ||||| | | | | || || || |||| |||| || | | | |
Sbjct 1037 GTAAATGGAAAGGGAC--AGGA-T--T-CTTCA-GATGTATTGGCTTCTGAAAAG-A-TG 1087
Query 646 GCTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTG 705
||||||||||| ||||| || ||||||||||| ||||||| ||| | ||||| ||| |
Sbjct 1088 GCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTATTTGTTCCAGTC 1147
Query 706 TTTAAGTCAT-TAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-CA 763
|||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1148 TTTAAGGC-TCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC- 1205
Query 764 TTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTC 823
||||||| |||||||||| ||| ||||| || || | ||| |||||| | || ||| | |
Sbjct 1206 TTTGGATCTTGACAGATGCCATTCATTACGGGGAATCAGAAAGACAAAAGCTCAAAGTAC 1265
Query 824 CACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATT-TTGCTA 882
| || || |||||||| || || ||||||| ||| | |||||||| || ||| || ||
Sbjct 1266 CTCAGGCCTTGTCTCGAATCGACACACAAGGCGCTCTGTTTTTCCTCGGAATTCTTT-TA 1324
Query 883 TCTATGAGCAGTCTTGATGCGGCTGGGATTCT-CAAAGTGATTGCGAACTATCTTGATGC 941
||| | ||||| ||||| || |||||||| || | | |||||| ||||| ||||||||
Sbjct 1325 TCTGTAAGCAGCCTTGAGGCCGCTGGGATCCTTCGG-GAGATTGCAAACTACCTTGATGC 1383
Query 942 TCA-TATAGCCAATGTTGAACTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAG 1000
|| |||| |||| ||||| || ||||||||| ||| || || ||||| || |||||||
Sbjct 1384 -CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCTGCAATCATAG 1442
Query 1001 ATAATGTCCCATTGGTTGCGGCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAG 1060
| ||||| ||||||||||| || || |||||||||||||| ||| || | ||||||||||
Sbjct 1443 ACAATGTTCCATTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTCAAG 1502
Query 1061 ATTCTGAGTTTTGGCAACTCATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTA 1120
||||||| |||||||| |||||| |||| || || || || || ||||| |||||| | |
Sbjct 1503 ATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCA 1562
Query 1121 CTGGGTCTGCTGCTGGAGTAATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACT 1180
||| ||||||||||| ||| ||||||| | |||||||||||| |||||||||||||||
Sbjct 1563 TTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTACT 1622
Query 1181 TTC-GTAAGGTGAGCGGTTTTGCTTTTGCGGGTTTTACTGCTGGTATC--ATGACTTACC 1237
| | | ||||| || |||||||||||||| |||| | ||||||||||| | | |||| |
Sbjct 1623 T-CAGAAAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATCGCA-G-CTTATC 1679
Query 1238 TCGCGGTTCACAA-CTTC 1254
| |||||||| || ||||
Sbjct 1680 TGGCGGTTCATAATCTTC 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5