BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49810.1 Length=1263 Score E Sequences producing significant alignments: (Bits) Value Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705 2013 0.0 Ahg929841 jgi|Araly1|929841|scaffold_302298.1 963 0.0 > Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705 Length=1272 Score = 2013 bits (1090), Expect = 0.0 Identities = 1207/1265 (95%), Gaps = 2/1265 (0%) Strand=Plus/Plus Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTGATCATCTTCGAGGAGTCTTTATCATTT 60 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTCATCATCTTCGAGGAGTGTTTATCTTTT 60 Query 61 AGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGAG 120 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 AGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGAG 120 Query 121 ACTTCTGTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGCCAAATA 180 || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 ACATCTCTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGTCAAATA 180 Query 181 GTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTT 240 |||||||| ||||| || || ||||| |||||||| |||||||||| |||||||||||| Sbjct 181 GTGTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCAAGGATTC 240 Query 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGATTGGT 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGATGATTGGT 300 Query 301 TTCGCGACCTTTTTCCTCAGCTCTGTTCTTGACAACCTAACATCTACTATTGTAATGGTG 360 || |||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| Sbjct 301 TTTGCGACCTTTTTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTTGTTATGGTT 360 Query 361 TCGCTACTGAGAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAGGAGCAGTTGTG 420 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TCGCTACTGAGAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGGAGCAGTTGTG 420 Query 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTACTACAACTATG 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTACTACAACTATG 480 Query 481 CTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCtttttttACCTTCA 540 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTTTTTACCTTCA 540 Query 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTACATGGAATG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTAAATGGAATG 600 Query 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCGTAGTGCTCCAAGAGGAAAG 660 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCATACTGCTCCAAGAGGAAAG 660 Query 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTGTTTAAGTCATTAACC 720 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTATTTAAGTCATTAACC 720 Query 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780 Query 781 GTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTCCACATGCTTTGTCTCGG 840 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 781 GTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTCCACATGCTTTGTCTCGG 840 Query 841 ATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATTTTGCTATCTATGAGCAGTCTTGAT 900 |||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct 841 ATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATTTTGTTAGCTATGAGCAGTCTTGAT 900 Query 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960 Query 961 CTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAGATAATGTCCCATTGGTTGCG 1020 ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 961 CTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGATAATGTCCCATTGGTTGCA 1020 Query 1021 GCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080 ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1021 GCAACTATGGGGATGTATGATCTCTCAAGATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080 Query 1081 ATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGGTCTGCTGCTGGAGTA 1140 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1081 ATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGATCTGCTGCTGGAGTA 1140 Query 1141 ATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACTTTCGTAAGGTGAGCGGTTTT 1200 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1141 GCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATTTTCGTAAGGTGAGTGGTTTT 1200 Query 1201 GCTTTTGCGGGTTTTACTGCTGGTATCATGACTTACCTCGCGGTTCACAA-CT-TCCCTC 1258 |||||||| ||||||||||| |||||| |||||||||| | ||||||| | || ||||| Sbjct 1201 GCTTTTGCTGGTTTTACTGCGGGTATCGTGACTTACCTGGTGGTTCACTATCTCTCCCTG 1260 Query 1259 TTTAA 1263 ||||| Sbjct 1261 TTTAA 1265 > Ahg929841 jgi|Araly1|929841|scaffold_302298.1 Length=1772 Score = 963 bits (521), Expect = 0.0 Identities = 1034/1278 (81%), Gaps = 50/1278 (4%) Strand=Plus/Plus Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTG-ATCATCTTCGAGGAGTCTTTATCATT 59 |||||||||||||||||||||||||| | | ||||||||||| ||||||||| | || Sbjct 446 ATGGCATTGTTGTTTGGAATAGGATACG-CCGGAATCATCTTCGAAGAGTCTTTAGCTTT 504 Query 60 TAGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGA 119 || |||||| ||||||| ||| |||||||| || ||||||||||||||||| ||||| | Sbjct 505 TAATAAAAGTGGAATAGGACTGTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGG 564 Query 120 GACTTC-TGTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGCC 175 | || | | | ||||| | | |||||| |||||||| ||||| || ||||||||| Sbjct 565 GGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGTG 623 Query 176 AAATAGTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAG 235 |||| || || | | |||| || ||||||||||||||||| ||| |||||||||| |||| Sbjct 624 AAATCGTATTTTTCTTGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCAAG 683 Query 236 GATTTAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGA-TACTTTTATGGGT 293 |||||||| |||||||||| |||| | || || |||| || |||| | ||||||||||| Sbjct 684 GATTTAAGTTGGTTACAGACAGTATCACCA-CTCGGAAGCCAAAGACT-CTTTTATGGGT 741 Query 294 GATTGG-TTTCGCGACCTTT-TTCCTCAGCTCTG-TTCTTGACAACCTAACATCTACTAT 350 | |||| ||| | || |||| || ||||| || | |||| ||||| || || ||||| || Sbjct 742 GGTTGGCTTT-GTGA-CTTTCTTTCTCAGTTC-GATTCTAGACAATCTGACCTCTACCAT 798 Query 351 TGTAATGGTGTCGCTACTGA-GAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAG 409 ||| ||||| || |||| | ||| ||| |||||| |||||| |||||||||||| ||| Sbjct 799 TGTCATGGTTTCTTTACTAAGGAA-ACTGGTTCCTCAATCAGAGTACCGCAAACTTCTAG 857 Query 410 GAGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTA 469 |||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 858 GAGCTGTTGTGGTTATAGCAGCAAATGCTGGAGGAGCATGGACTCCAATTGGTGATGTTA 917 Query 470 CTACAACTATGCTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCttt 529 ||||||||||||||||||| ||||| || ||| |||| || ||||||| || ||||| Sbjct 918 CTACAACTATGCTATGGATTCATGGTCAGATAACAACCTTGCCGACTATGCAGGGCCTTT 977 Query 530 ttttACCTTCAGC-GATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAG 588 || ||||||| || | ||||||||| ||||||||| || |||||||| |||||||||||| Sbjct 978 TTATACCTTCGGCTG-TTTCTCTTGCTGTTCCACTAGCCCTCATGTCCTTGACCAGTGAG 1036 Query 589 GTACATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATG-ATCGTAGT- 645 ||| |||||| ||||| | | | | || || || |||| |||| || | | | | Sbjct 1037 GTAAATGGAAAGGGAC--AGGA-T--T-CTTCA-GATGTATTGGCTTCTGAAAAG-A-TG 1087 Query 646 GCTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTG 705 ||||||||||| ||||| || ||||||||||| ||||||| ||| | ||||| ||| | Sbjct 1088 GCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTATTTGTTCCAGTC 1147 Query 706 TTTAAGTCAT-TAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-CA 763 |||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1148 TTTAAGGC-TCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC- 1205 Query 764 TTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTC 823 ||||||| |||||||||| ||| ||||| || || | ||| |||||| | || ||| | | Sbjct 1206 TTTGGATCTTGACAGATGCCATTCATTACGGGGAATCAGAAAGACAAAAGCTCAAAGTAC 1265 Query 824 CACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATT-TTGCTA 882 | || || |||||||| || || ||||||| ||| | |||||||| || ||| || || Sbjct 1266 CTCAGGCCTTGTCTCGAATCGACACACAAGGCGCTCTGTTTTTCCTCGGAATTCTTT-TA 1324 Query 883 TCTATGAGCAGTCTTGATGCGGCTGGGATTCT-CAAAGTGATTGCGAACTATCTTGATGC 941 ||| | ||||| ||||| || |||||||| || | | |||||| ||||| |||||||| Sbjct 1325 TCTGTAAGCAGCCTTGAGGCCGCTGGGATCCTTCGG-GAGATTGCAAACTACCTTGATGC 1383 Query 942 TCA-TATAGCCAATGTTGAACTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAG 1000 || |||| |||| ||||| || ||||||||| ||| || || ||||| || ||||||| Sbjct 1384 -CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCTGCAATCATAG 1442 Query 1001 ATAATGTCCCATTGGTTGCGGCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAG 1060 | ||||| ||||||||||| || || |||||||||||||| ||| || | |||||||||| Sbjct 1443 ACAATGTTCCATTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTCAAG 1502 Query 1061 ATTCTGAGTTTTGGCAACTCATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTA 1120 ||||||| |||||||| |||||| |||| || || || || || ||||| |||||| | | Sbjct 1503 ATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCA 1562 Query 1121 CTGGGTCTGCTGCTGGAGTAATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACT 1180 ||| ||||||||||| ||| ||||||| | |||||||||||| ||||||||||||||| Sbjct 1563 TTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTACT 1622 Query 1181 TTC-GTAAGGTGAGCGGTTTTGCTTTTGCGGGTTTTACTGCTGGTATC--ATGACTTACC 1237 | | | ||||| || |||||||||||||| |||| | ||||||||||| | | |||| | Sbjct 1623 T-CAGAAAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATCGCA-G-CTTATC 1679 Query 1238 TCGCGGTTCACAA-CTTC 1254 | |||||||| || |||| Sbjct 1680 TGGCGGTTCATAATCTTC 1697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47196171246 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5