BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49830.1

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914090 jgi|Araly1|914090|Al_scaffold_0001_4344                    628    1e-179


> Ahg914090 jgi|Araly1|914090|Al_scaffold_0001_4344
Length=654

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 431/472 (91%), Gaps = 17/472 (4%)
 Strand=Plus/Plus

Query  283  TCGGCTGATGGGCACGACCGGGTTTGCGATCCAAAACCCGGTAAGAGATGCAAGCGAGAT  342
            |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct  151  TCGGGTGATGAGCACGACCGGGTCTGCGATCCAAAACCGGGTAAGAGATGCAAGGGAGAT  210

Query  343  CAGAAGAAGTCATCGCTTGGAAATGCTAAGGTCAAGAAAGAAAAGGTTGGTGAAAAAATC  402
            |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  211  CAGACGAAGTCATCGGTTGGAAATGCTAAGGTTAAGAAAGAAAAGGTTGGTGAAAGAATC  270

Query  403  ACAACATTGCAGCACTTGGTTTCTCCATATGGCAAGACAGATGCAGCATCAGTGTTGCAT  462
            ||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  271  ACAGCATTGCAACAGTTGGTTTCTCCATATGGCAAGACAGATACAGCATCAGTGTTGCAT  330

Query  463  GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC  522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  331  GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC  390

Query  523  TTCAAACATAACCCTCTTG-A---CGACGAAGACACCGGAGAAGTAAACCCGACGATGAA  578
            ||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||
Sbjct  391  TTCAAACATAACCCTCTTGTAAGACGACGAAGACACCGGAGGAGTAAACCCGACGATGAA  450

Query  579  AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT  510

Query  639  GGCGAATACTAACGGTGCTGATTTATGGTCCTCTGCCATCTTGTCACCACTCACCAGTCA  698
                ||  |    |||| |||||||||||||||||| ||||  ||     ||||||||||
Sbjct  511  ----AA--C----GGTGTTGATTTATGGTCCTCTGCTATCTA-TCTTG--TCACCAGTCA  557

Query  699  CACCAACAGTGAACCAGTAGAGATTGTGGAAGTCAAATCTCATAAAGATAAG  750
            |||||| |||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct  558  CACCAAAAGTGAACCAGTAGAGACTGTGGAAGTTAAATCTTATAAAGATAAG  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27753483576


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5