BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49830.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg914090 jgi|Araly1|914090|Al_scaffold_0001_4344 628 1e-179 > Ahg914090 jgi|Araly1|914090|Al_scaffold_0001_4344 Length=654 Score = 628 bits (340), Expect = 1e-179 Identities = 431/472 (91%), Gaps = 17/472 (4%) Strand=Plus/Plus Query 283 TCGGCTGATGGGCACGACCGGGTTTGCGATCCAAAACCCGGTAAGAGATGCAAGCGAGAT 342 |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 151 TCGGGTGATGAGCACGACCGGGTCTGCGATCCAAAACCGGGTAAGAGATGCAAGGGAGAT 210 Query 343 CAGAAGAAGTCATCGCTTGGAAATGCTAAGGTCAAGAAAGAAAAGGTTGGTGAAAAAATC 402 |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||| Sbjct 211 CAGACGAAGTCATCGGTTGGAAATGCTAAGGTTAAGAAAGAAAAGGTTGGTGAAAGAATC 270 Query 403 ACAACATTGCAGCACTTGGTTTCTCCATATGGCAAGACAGATGCAGCATCAGTGTTGCAT 462 ||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 271 ACAGCATTGCAACAGTTGGTTTCTCCATATGGCAAGACAGATACAGCATCAGTGTTGCAT 330 Query 463 GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC 390 Query 523 TTCAAACATAACCCTCTTG-A---CGACGAAGACACCGGAGAAGTAAACCCGACGATGAA 578 ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| Sbjct 391 TTCAAACATAACCCTCTTGTAAGACGACGAAGACACCGGAGGAGTAAACCCGACGATGAA 450 Query 579 AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT 510 Query 639 GGCGAATACTAACGGTGCTGATTTATGGTCCTCTGCCATCTTGTCACCACTCACCAGTCA 698 || | |||| |||||||||||||||||| |||| || |||||||||| Sbjct 511 ----AA--C----GGTGTTGATTTATGGTCCTCTGCTATCTA-TCTTG--TCACCAGTCA 557 Query 699 CACCAACAGTGAACCAGTAGAGATTGTGGAAGTCAAATCTCATAAAGATAAG 750 |||||| |||||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 558 CACCAAAAGTGAACCAGTAGAGACTGTGGAAGTTAAATCTTATAAAGATAAG 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5