BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49840.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923418 jgi|Araly1|923418|scaffold_104699.1 2351 0.0
> Ahg923418 jgi|Araly1|923418|scaffold_104699.1
Length=1525
Score = 2351 bits (1273), Expect = 0.0
Identities = 1450/1535 (94%), Gaps = 13/1535 (1%)
Strand=Plus/Plus
Query 148 GTTACATTTTTAAGAGTCCATAAAAAATGGAAAAGAAACAAGGTTTTTTCTCATCACTCA 207
||| ||||||||||||||| | |||||| ||||||||||| ||||||||||||||||
Sbjct 1 GTTTCATTTTTAAGAGTCC-T---TAATGGAGAAGAAACAAGGGTTTTTCTCATCACTCA 56
Query 208 GAGACGAAGTCGTAAGAGGCTTATCTCCTTCTCGTTCAAGACCACGTTCTCGTTCCGCAA 267
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 57 GAGACGAAGTCGTAAGAGGCTTCTCTCCTTCTCGTTCACGACCACGTTCTCGTTCCGCGA 116
Query 268 GCCCGTCTCGTTCAACAACCCCACACATGAAAGCTCTTCTCTGGGGAAGAAAGAAACTAA 327
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 117 GCCCATCTCGTTCAACAAACCCACACATGAAAGCTCTTCTCTGGGGGAGAAAGAAACTAA 176
Query 328 TCGCAAGCTCCGGCTGCAGCGGCGGCGGAGGAGTAATCGGAGGAGAAAGAGGAGG-TTAT 386
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||| || |
Sbjct 177 TCGCAAGCTCCGGCTGCAGCGGCGGCGGAGGAGTAAGCGGAGGAGGAGGAGGAGGATT-T 235
Query 387 TACTTGTCGCAACCTGAGCCGTTTATTGGAAGATCCAGTAGTTTAAGACCAGTAATGGAA 446
|||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 236 TACTTGCCGCAACCAGAGCCGTTGATTGGGAGATCCAGTAGTTTAAGACCAGTAATGGAA 295
Query 447 GGTCCTGATCCAGATAACGGTGAAGTCTCTGGAGTGGATTCGAAACGACTCGGGTCGGGT 506
|||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 296 GGTCCTGATCCAGACAACGGTGAAATTTCTGGAGGGGATTCGAAACGACTCGGGTCGGGT 355
Query 507 TTAAGTCATTGGGTCAAAGGTCAGTGGTCACGTGCTCCGTCCGTGACTTCAACTACGCCG 566
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 356 TTAAGTCATTGGGTCAAAGGTCAGTGGTCACGTGCTCCGTCCGTGACTTC-A--ACGCCG 412
Query 567 GCTTATCGGAAGTCTGATTTGAGACTTCTTCTCGGTGTTATGGGAGCTCCTCTCGCTCCC 626
| |||||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 413 GTTTATCGGAGGTCTGATTTGCGGCTTCTTCTCGGCGTTATGGGAGCTCCTCTCGCTCCC 472
Query 627 ATTAACGTCTCTTCCTCCAGTCATCTTCTTCATCTCACCATCAGAGACTCTCCCACTGAA 686
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 473 ATTAACGTCTCTTCCTCCAATCATCTTCTTCATCTCACCATCAGAGACTCTCCCATTGAA 532
Query 687 ACATCATCTGCACAGTACATTTTGCAACAGTACACGGCGGCTTGTGGTGGCCACAAGTTA 746
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 533 ACAACATCTGCACAATACATTTTGCAACAGTACACGGCAGCTTGTGGTGGCCACAAGTTA 592
Query 747 CATAACGCCATTAAGAACGCTTATGCTATGGGTAAGTTAAAGATGATAACTTCAGAGCTT 806
|| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 593 CAAAACACCATTAAGAACGCTTATGCTATGGGTAAGCTCAAGATGATAACTTCAGAGCTT 652
Query 807 GAAACTCCTACAGGAACTGTTAGAAACCGAAACTCTACAAAGTCGGAAACTGGTGGGTTT 866
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 653 GAAACTCCCACAGGCACTGTTAGAAACCGAAACTCTGCAAAGTCGGAAACTGGTGGGTTT 712
Query 867 GTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCTCTGTTGGTGGTAGTAAA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCTCTGTTGGTGGTAGTAAA 772
Query 927 GTTCGTGCTGGCTGTAATGGGAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCTCAC 986
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTTCGTGCTGGCTGCAATGGCAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCTCAC 832
Query 987 ACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGATCCGAGAACT 1046
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 ACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGACCCGAGAACT 892
Query 1047 ACTGCTACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAAGAT 1106
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACTGCCACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAAGAT 952
Query 1107 TGTTTCATTTTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGACCA 1166
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGTTTCATTCTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGACCA 1012
Query 1167 GCAGAGATTGTAAGACACATCCTTTTCGGTTACTTCAGCCAAAGAACAGGACTTCTAGCT 1226
|| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1013 GCGGAGATCGTAAGACATATCCTTTTTGGTTACTTCAGCCAAAGAACAGGACTTTTAGCT 1072
Query 1227 CAAATTGAGGATTCGCAGTTGACTCGAATCCAATCTAACGATGGTGATGCTGTTTACTGG 1286
||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 1073 CAAATCGAGGATTCGCAGTTGACCCGTATCCAATCAAACGATGGTGATGCTGTTTATTGG 1132
Query 1287 GAGACCACGATCAATTCGTCTCTAGACGACTACAAAC-AGGTGGAAGGGATCATGATTGC 1345
||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||
Sbjct 1133 GAGACCACGATCAATTCGTCTCTAGACGATTACAAACCAG-TCGAAGGGATCATGATTGC 1191
Query 1346 TCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTTGCTATGAGCCACAC 1405
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1192 TCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTCGCAATGAGCCACAC 1251
Query 1406 TAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTCGCTTTCAATGTTCCTGGTCT 1465
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1252 TAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTTGCTTTCGATGTTCCTGGTCT 1311
Query 1466 GTCTCTAGATTGCTTTATCCCACCCGCTGATCTTCGGTCTGGTTCGTTAACTGAAGCCTG 1525
|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1312 GTCTCTAGATTGCTTTATTCCACCCGCTGATCTTAGGTCTAGTTCGTTAACTGAAGCCTC 1371
Query 1526 CGAGTACTCGGGTCAAGAGGAGAAAGGGAAGAGCTC-ACTAGCGTTGGCTTCAACAACAG 1584
||||||||||||||| ||||||||||||||||| || | | || || ||| |||||||||
Sbjct 1372 CGAGTACTCGGGTCACGAGGAGAAAGGGAAGAGTTCGA-TCGCATTAGCTGCAACAACAG 1430
Query 1585 CTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTCGACAATGATCCTGTTTGGC 1644
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1431 CTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTTGACAATGATCCGGTTTGGC 1490
Query 1645 ATATTGATGTCTGAGTATGGTAGGGAAGATGCAAT 1679
|||||||||||||||| ||||||||||||||||||
Sbjct 1491 ATATTGATGTCTGAGTTTGGTAGGGAAGATGCAAT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5