BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49850.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475251 jgi|Araly1|475251|fgenesh2_kg.2__381__AT1G49850.1 1299 0.0
Ahg923419 jgi|Araly1|923419|scaffold_104700.1 1160 0.0
> Ahg475251 jgi|Araly1|475251|fgenesh2_kg.2__381__AT1G49850.1
Length=942
Score = 1299 bits (703), Expect = 0.0
Identities = 892/975 (91%), Gaps = 45/975 (5%)
Strand=Plus/Plus
Query 137 TCACGTCCGGGTCGATCCGACCCGGCTTTAGAATCCGACACTTCTTCCTATCGACACCAC 196
||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||
Sbjct 1 TCACGTCCGGGTCGATCCGACCCGGATTTAGAATCCGACTCTTCTTCTTATCGACACTAC 60
Query 197 TCACACCATCATCATC---GCCGTCACGGCGTCCATCATCATAATCAGCGTCATGATTCC 253
|||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 61 TCACACCATCATCATCATTGCCGCCACGGCGTCAATCATCATAATCAACGTCATGATTCC 120
Query 254 GACGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTTTCACCATCCG 313
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 121 GACGGCTGTGATCCCCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTGTCACC-TTC- 178
Query 314 ATTCAGGAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTAGTCAGTATTTAAATACG 373
| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 179 --T-A-GAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTGGTCAGTATTTGAATACG 234
Query 374 GATAGTACTGATACTGAAACTCAGAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGG 433
|| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 GACAGTACTGATATTGATACTCAAAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGG 294
Query 434 CTTCCTGGAGCTGTTCTGCTTGCAAGGGATAGACTTTTCGAAAGATTGAGAGGTGTTTCT 493
|||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||
Sbjct 295 CTTCCTGGAGCTGTTCTGCTCGCAAGGGCTAGACTTTTCGAGAGACTGAGAGGTGTTTCT 354
Query 494 TTGTCTAGTAACAGTCGAAGCAACAGAGTTTCATT--G-GATGATCAAAGGGAGTCTTCA 550
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 355 TTGTCTAGTAACAGTCGAAGCAACAGAGTTTCATTGGGAGATGATCAAAGGGAGTCTTCA 414
Query 551 TTTCATTCTATAGATGGAGATCCAATTTTTCAACTAGCAGGGCTTCAAGTGACCTATGAA 610
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 TTTCATTCTATAGATGGAGATCCAATTTTTCAACTAGAAGGGCTTCAAGTGACCTATGAA 474
Query 611 TGCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGGCAAACT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 475 TGCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGACAAACT 534
Query 671 TTTAGCTCAGCCGAGGTTAA-ATCCGAGATGAGAGATTGTAGCATATGTTTAGAGAGTTT 729
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 535 TTTAGCTCAGCCGAGGTTAATA-CCGAGATGAAAGATTGTAGCATATGTTTAGAGAGTTT 593
Query 730 CACTAAAGGTGACATGCTAATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTT 789
||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 594 CACAAAAGGCGACATGCTTATATCCTTACCATGTACCCATAGTTTCCATTCTTCTTGCTT 653
Query 790 AAACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTGTTGCCGTAGAGCCATAGCAAAGGA 849
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 654 AAACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTATTGCCGTAGAGCCATAGCTAAGGA 713
Query 850 ATAGAAACTTGTAAATAGAATCTTTGCCTAACCATTAGGCCATAGCCATACACATCTTCT 909
|||||||||||||||||||||||||||||||||||| | | | | ||||
Sbjct 714 ATAGAAACTTGTAAATAGAATCTTTGCCTAACCATT---C--T-----T-----T-TTCT 757
Query 910 CTTCTTCTTGCTATAGACATCCTTAAAACGATCTTCTGAGTTTTGTCGCCCATGAGTGtt 969
| |||||||||||||| ||| || ||||| ||||||||||||||||||||| |
Sbjct 758 -T-------GCTATAGACATCCTCAAATCGGTCTTC-GAGTTTTGTCGCCCATGAGTGCT 808
Query 970 ttttttACTGTCACATGTT-TGT----AATGGTTTTTGTTGTGCCATTAGGCAGTTCAAG 1024
|||||| |||||||||||| ||| || ||||||||||||||||||||| ||||||||
Sbjct 809 TTTTTTGCTGTCACATGTTGTGTTTGTAACGGTTTTTGTTGTGCCATTAGGTAGTTCAAG 868
Query 1025 CGTTGATATCGTATGGTGTGAATCTTTTTAGTTTTATTCACTGTGATCTCTCTTTTAATG 1084
||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 869 CGTTGATATTGTATGGTGTGAATCTTTTTAGTTTTCTTCACTGTGATC-CTCTTTTAATG 927
Query 1085 TCTTGTTGGTTATAT 1099
|||||||||||||||
Sbjct 928 TCTTGTTGGTTATAT 942
> Ahg923419 jgi|Araly1|923419|scaffold_104700.1
Length=790
Score = 1160 bits (628), Expect = 0.0
Identities = 748/803 (93%), Gaps = 20/803 (2%)
Strand=Plus/Plus
Query 79 GAATTTGGTGATTGATCGGTGCATGACGAGCGCATCGGAACTCTTCTCTACACGAAGATC 138
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GAATTCGGTGATTGATCGGTGCATGACGAGTGCATCGGAACTCTTCTCTACACGAAGATC 60
Query 139 ACGTCCGGGTCGATCCGACCCGGCTTTAGAATCCG-ACACTTCTTCCTATCGACACCAC- 196
||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||
Sbjct 61 ACGTCCGGGTCGATCCGACCCGGATTTAGAAT-CGAACACTTCTTCTTATCGACACCACG 119
Query 197 -TCACACCATCATCATCGCCGTCACGGCGTCCATCATCATAATCAGCGTCATGATTCCGA 255
| || ||||||||||||||||||||| |||||||||||| || || ||||| |||||
Sbjct 120 GT-AC-CCATCATCATCGCCGTCACGGTACCCATCATCATAACCAACGACATGACTCCGA 177
Query 256 CGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTTTCACCATCCGAT 315
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 178 CGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTGTCACCA-CC--- 233
Query 316 TCAGGAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTAGTCAGTATTTAAATACGGA 375
| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 234 -C-GGAAC---GTAGACCTATTCGTGATGTTCAAGGCACTGGTCAGTATTTGAATACGGA 288
Query 376 TAGTACTGATACTGAAACTCAGAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGGCT 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 289 CAGTACTGATACTGAAACTCAAAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGGCT 348
Query 436 TCCTGGAGCTGTTCTGCTTGCAAG-GGATAGACTTTTCGAAAGATTGAGAGGTGTTTCTT 494
|||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 349 TCCTGGAGCTGTGCTGCTTGCAAGAGCA-AGACTTTTCGAAAGATTGAGAGGTGTTTCTT 407
Query 495 TGTCTAGTAACAGTCGAAGCAACAGAGTTTCA-T-TG-GATGATCAAAGGGAGTCTTCAT 551
||||||||||||||||| |||| ||||||||| | | ||||||||||||||||||||||
Sbjct 408 TGTCTAGTAACAGTCGAGGCAATAGAGTTTCAGTGGGAGATGATCAAAGGGAGTCTTCAT 467
Query 552 TTCATTCTATAGATGGAGATCCAATTTTTCAACTAGCAGGGCTTCAAGTGACCTATGAAT 611
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 468 TTCATTCTGTAGATGGTGATCCAATTTTTCAACTAGAAGGGCTTCAAGTGACCTATGAAT 527
Query 612 GCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGGCAAACTT 671
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 528 GCAACAAGAAACCACAAGGTCTCACACAAGATGCTATTAACTGTTTACACCGGCAAACTT 587
Query 672 TTAGCTCAGCCGAGGTTAAATCCGAGATGAGAGATTGTAGCATATGTTTAGAGAGTTTCA 731
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 588 TTAGCTCAGCCGAGGTTAAAACCGAGATGAGGGATTGTAGCATATGTTTAGAGAGTTTCA 647
Query 732 CTAAAGGTGACATGCTAATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTTAA 791
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTAAAGGCGACATGCTTATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTTAA 707
Query 792 ACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTGTTGCCGTAGAGCCATAGCAAAGGAAT 851
|||||||||||| |||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 708 ACCCTTGGCTTAAAGCTTGTGGAGATTGTCCTTATTGCCGTAGAGCCATATCTAAGGAAT 767
Query 852 AGAAACTTGTAAATAGAATCTTT 874
||||||||||||||| |||||||
Sbjct 768 AGAAACTTGTAAATATAATCTTT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5