BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49860.1
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474117 jgi|Araly1|474117|fgenesh2_kg.1__4071__AT1G49860.1 1075 0.0
> Ahg474117 jgi|Araly1|474117|fgenesh2_kg.1__4071__AT1G49860.1
Length=837
Score = 1075 bits (582), Expect = 0.0
Identities = 743/819 (91%), Gaps = 17/819 (2%)
Strand=Plus/Plus
Query 11 ATAACTAA-TCTAGTAAATAGACAAAGAAAACAACATGGCTGATTCTAAGATGAAGCTCC 69
|||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 ATAACTAAGT-TAGTAAATAGACAAAGAAATCAACATGGCTGATTCGAAGATGAAGCTCC 59
Query 70 ACTGTGGCT-TTATCTGGGGT-AATTCGGCAGCTCTCTTTTGTATCAATGAGAAAGGTCT 127
||||||||| | ||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 60 ACTGTGGCTGGT-TCT-TTTTAAATTCGGCAGCTCTCTTTGGTATCAATGAGAAAGGTCT 117
Query 128 TGACTTTGAGCTTGTCTTCGTAGATTGGCTTGCTGGTGAAGCCAAAACCAAAACTTTTCT 187
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGACTTTGAGCTGGTATTCGTAGATTGGCTTGCTGGTGAAGCCAAAACCAAAACTTTTCT 177
Query 188 CTCTACTCTCAACCCATTTGGTGAAGTCCCGGTTCTTGAAGATGGAGATCTCAAACTTTT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCTACTCTCAACCCATTTGGTGAAGTCCCGGTTCTTGAAGATGGAGATCTCAAACTTTT 237
Query 248 C-GAACCAAA-G-G----C-G-ATCACGCGATACCTAGCCGAGCAATACAAAGACGTTGG 298
| | |||||| | | | | ||||||||||||||||| ||||| ||||||||| ||||
Sbjct 238 CGGTACCAAAGGCGATCACGGCATCACGCGATACCTAGCGGAGCAGTACAAAGACATTGG 297
Query 299 AACAAATCTATTACCAGATGATCCCAAAAAGAGAGCAATCATGTCGATGTGGATGGAAGT 358
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 298 AACAAATCTATTACCAGATGATCCCAAAAAGAGAGCAATCGTGTCCATGTGGATGGAAGT 357
Query 359 AGATAGCAATCAATTTCTTCCTATAGCATCAACACTCATCAAAGAACTCATCATCAATCC 418
||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 358 AGATACCAATCAATTTCTTCCTATAGCATCAACACTCATCAAAGAACTCATGATAAAACC 417
Query 419 ATATCAAGGTTTAGCCACAGACGATACAGCAGTTCAAGAGAACAAAGAAAAGTTATCAGA 478
|||||||||||||||||| || | | || |||||||||| ||| |||| |||||||||||
Sbjct 418 ATATCAAGGTTTAGCCACCGATGTTGCATCAGTTCAAGAAAACCAAGAGAAGTTATCAGA 477
Query 479 GGTTCTGAACATCTACGAGACTCGTTTAGGCGAGTCTCCTTACTTGGCTGGTGAAAGCTT 538
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 478 GATTCTGAACATCTACGAGACTCGTTTAGGCGAGTCTCCTTACTTAGCCGGTGAAAGCTT 537
Query 539 CAGTTTAGCGGATCTGCATCATCTTGCGCCGATTGATTACTTGTTGAACACGGACGAAGA 598
|| |||||||||||| ||||||||| | | ||||||||||||||||||||| || |||||
Sbjct 538 CACTTTAGCGGATCTTCATCATCTTCCACTGATTGATTACTTGTTGAACACAGAAGAAGA 597
Query 599 AGAGTTGAAAAACTTGATCTATTCACGTCCCAATGTAGCGGCATGGGTCGAGAAAATGAA 658
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 598 AGAATTGAAAAACTTGATCTATTCACGTCCCAATGTAGCCGCATGGGTCGATAAAATGAA 657
Query 659 AATGAGGCCAGCTTGGCTGAAAACAGTAGTCATGAAAAATCACATCGTTGACTTGATGAA 718
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 GATGAGACCAGCTTGGCTAAAAACAGTCGTCATGAAAAATCACATCGTTGACTTGATGAA 717
Query 719 GCAGCGTCGTTTGCCTATAAAGTTAGATTCATCGTGTCATGAGTCAACCGTTGTGGCTCa 778
||| || ||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||
Sbjct 718 GCAACGGCGTTTGCCTATAAGGTTAGATTCATCGTGTCATGAGTTAACTGTTGTCGCTCA 777
Query 779 aaaaaaTGCGATCGCCA-TTGAGAACAAGTAAGCAAGCA 816
|||| ||| | || | ||| |||||| |||| |||||
Sbjct 778 GAAAACGGCGGTGGC-AGTTGGGAACAATTAAGTAAGCA 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5