BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49870.1
Length=2848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474119 jgi|Araly1|474119|fgenesh2_kg.1__4073__AT1G49870.1 3552 0.0
> Ahg474119 jgi|Araly1|474119|fgenesh2_kg.1__4073__AT1G49870.1
Length=2757
Score = 3552 bits (1923), Expect = 0.0
Identities = 2365/2568 (92%), Gaps = 72/2568 (3%)
Strand=Plus/Plus
Query 114 GATACAGCAAAATTGAGGATATGATTAAAGCCGCCATGGATCTCGGTTGCTTGGATTTGG 173
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 GATACAACAAATTTGAGGATATGATTAAAGCCGCCATGGATCTCGGTTGCTTGGATTTGG 102
Query 174 GATGTCTTTCTGACAAGAAAAGCGGCGTCGGTGTTTCCGATCATCTTGAGTGTTCGTCTT 233
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 103 GATGTCTTTCTGACAAGAAAAGCGGCGTCGGAGTGTCCGATCATCTTGAATGTTCGTCTT 162
Query 234 CACCTTCGAAACTTGGCAAGAATAAATCACCAAGAGAGACATCAGCTCTTAGAAAATCAC 293
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 163 CACCTTCGAAACTTGGCAAGAATAAATCACCAAGAGAGGCATCATCTCTTAGAAAATCAC 222
Query 294 AATCAAAGAGGTCTTCTCAACGTAAAA-C-C-TCACCTCTTGGTTGGTTCCCGCGAAGAA 350
||||||||||||||||||||||||||| | | ||||||||||| |||||||| |||| ||
Sbjct 223 AATCAAAGAGGTCTTCTCAACGTAAAACCTCATCACCTCTTGGCTGGTTCCCACGAACAA 282
Query 351 AAGGGGATTCCTACTTGAATAGGAAGATCAAGAAGCTACAGGAGGTTGGTGGAATGAATC 410
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGGGGGATTCCTACTTGAATAGGAAGATCAAGAAGCTACAGGAGGTTGGTGGAATGAATC 342
Query 411 AGACTCTTGATGAGACTCTTGGCGATTCAAATCCACACTACTGCAAAATTGTAAGAGAAC 470
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 343 AGACACTTGATGAGACTCTTGGCGACTCGAATCCACACTACTGCAAAATTGTAAGAGAAC 402
Query 471 AAATGGCTGTTAGAGAGGCTGCGGGTAAGGCTATGGAGCTTCGCAAAGCTGCTCTGGTTG 530
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 403 AAATGGCTGTGAGAGAGGCTGCGGGTAAGGCTATGGAGCTCCGCAAAGCTGCACTGGTTG 462
Query 531 AAGCATCTTGGTGTAGAATACTTCGTGCTGCTAGGATTCCATGTTTGGAAGCAGAAACTT 590
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 463 AAGCATCGTGGTGTAGAATACTTCGTGCTGCTAGGATTCCAAGTTTAGAAGCAGAAACTT 522
Query 591 TGATGGAGAATGCAGAAAAAGCTGCAGTGGAAGCTTTTGAAGCGGCATCTGCGTTGGGAG 650
||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 523 TGATGGAGAATGCAGAAAAGGCTGCGGTGGAAGCTTTTGAAGCGGCATCTGCAATGGGAG 582
Query 651 TGATAATGCATGATAAACCAAATAGCTCGAGGAAACAATATCGAATTGAAACATCAGGTA 710
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 583 TGATAATGCATGATAAACCAAATAGCTCAAGGAAACAATATCGAATCGAAACATCAGGAA 642
Query 711 CACATGGAAGGGGATCTCCTACTCATACCGTTACAGCATCTTTTGAAACTGCGTTTGATG 770
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 643 CACATGGAAGGGGATCTCCTACTCATACCGTTACAGCATCTTTTGAAACTGCTTTTGATG 702
Query 771 TTGATAAAGAAGTAGCAGCTGCTGTTAAAACTGCATTTGCTAGGCTTGCAAATTGCCCCT 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TAGATAAAGAAGTAGCAGCTGCTGTTAAAACTGCATTTGCTAGGCTTGCAAATTGCCCCT 762
Query 831 CTTTTAGCAAAGCTGAGATTAAAGACCTTCTGAAGAAAATCAGCGAGAATCCTGATGTGC 890
|| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTCTTAGTAAAGCTGAGTTTAAAGACCTTCTGAAGAAAATCAGCGAGAATCCTGATGTGC 822
Query 891 GTGATAATCATGAGATCACTGAGATGTCTTCAGAATGCGACACAGAGTCTGACTCTGAAC 950
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
Sbjct 823 GTGATAATCATGAGATTACTGAGATGTCTTCAGAATGCGACACAGAGTCCGATTCTGAGC 882
Query 951 TCGGCATTCTCCACAAGGTCGATGAAGAAGTGGCTGAATGTGAGGAGACTTCGTATTTCA 1010
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 883 TCGGCATTCTCCACAAGGTTGATGAAGAAGTGTCTGAATGTGAGGAGACTTCATATTTCA 942
Query 1011 AAATGAGACAACTAAAAGTCAAGAGGCGGCAGTCATTTGGGAAGTTTAGCAGGGAGAAAC 1070
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 943 AAATGAGACAGCTAAAAGTCAAGAGGTGGCAGTCCTTTGGGAAGTTTAGCAGGGAGAAGC 1002
Query 1071 TAGTGGAAT-TGATGCTGGAGAGGCTTCAGGGCTTACATGAAGATCAACTTTCAAGTCTT 1129
|||||| || ||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1003 TAGTGG-ATATGATGCTTGAGAGGCTTCAGGGATTACAAGAAGATCAACTTTCAAGTCTT 1061
Query 1130 GCCTCTGTAGTTGCTACTTGTGGTTTAAATGAGGCCTTGGCTGAAGTTAGTAGCCAGAGG 1189
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1062 GCCTCTGTAGTTGCTACTTGTGGTTTAAATGAGGTCTTGGCTGAAGTTGGTAGTCAGAGG 1121
Query 1190 --G-----GACAGAC--C--A-CAA--GCTTCGA-ACCA----A-TT-GT-TTC-A--GA 1224
| ||| || | | ||| | ||| | |||| | || | ||| | ||
Sbjct 1122 CTGCACACCACAAACATCGAACCAACTGTTTC-AGACCATGGGAGTTATTCTTCAATGGA 1180
Query 1225 TACAAGATCAAGAAGAGATTCTAAATTCGGGTCCTTAATGGAAGGAAAAACAACAAGGGA 1284
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct 1181 TACAAGATCAAGAAGAGATTCTAAATTCTGGTCTTTAACGGAAGGAAAAACAACAAGGGA 1240
Query 1285 TGGAACAGAGACAGAAATTCCGAGTTTGGACAAGTATCTAGTTAAGCACATGACCAAATT 1344
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1241 TGGAACAGAGACAGAAATTCCGAGTTTGGACAAGTATTTAGTTAAGCACATGACCAAATT 1300
Query 1345 AGAAAGAGAAGTCCATGAAGCCAAAAGGGTTTCAAAGGAAGTATCTGAGAAAAACAAAAA 1404
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1301 AGAAAGAGAAGTACATGAAGCCAAAAGGGCTTCAAAGGAAGTATCTGATAAAAACAAAAA 1360
Query 1405 GGTTCCTCAAGGTGTTGCAAGTGATCCTGTTCCAGATTTGGGAAGCATCCTTGTGAAACA 1464
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1361 GGTTCCTCAAGGTGTTGCAAGTAATCCTGTTCCGGATTTGGGAAGCATCCTTGTGAAACA 1420
Query 1465 CTCTTCAAGGCTTGAGAAAGAGATTGAAGAAGCCAAAAAGAACGCAGGAGTGAGTTTTGG 1524
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1421 TTCTTCAAGGCTTGAGAAGGAGATCGAAGAAGCCAAGAAGAATGCAGGAGTGAGTTTTGG 1480
Query 1525 AAAGTACCAAAAGACTTCAAGCAGAAACAAAACACCATTGGATCCTATCCCGGACTTGGA 1584
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1481 AAAGTACCAAAAGACTTCAGGCAGAAACAAAACGCCATTGGATCCTATCCCGGACTTGGA 1540
Query 1585 AAGTTTGCTAGTGAAAAAGCATGTTTCGGGATTGGAGAAGGAAGTTCAAGAAACTATAAA 1644
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1541 AAGTTTGCTAGTGAAAAAGCATGTTTCTGGATTCGAGAAAGAAGTTCAAGAAACTATAAA 1600
Query 1645 GAACTGCGGAAAAATGTATGAAAACGTGAAGAAACCGGGA-AGAAAAGATGGTTTGTCTG 1703
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
Sbjct 1601 GAACTGCGGAAAAATGTATGAAAACGTGAAGAAACCGGGACA-AAAAGATAGTTTGTCGG 1659
Query 1704 AAGTTCCAAGCCTGGATAGTTGTCTGGTAAAACATTTCTCCAAGCTAGAGAAAGA-AGTC 1762
|| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1660 AAATTCCAAGCCTTGATAGCTGTCTGGTAAAACATGTCTCCAAGCTAGAGAAAGAGA-TC 1718
Query 1763 CAAGAAGCAAAAAAGAGGAG-CAAAGAAGATCTTGAAGCAAGGAATTTAGAAACAGTTTC 1821
||||||||||| ||||| || | ||||||||||||||||||| |||| | ||||||||||
Sbjct 1719 CAAGAAGCAAAGAAGAG-AGGCCAAGAAGATCTTGAAGCAAGTAATTCAAAAACAGTTTC 1777
Query 1822 AAGTGTGTTGTTAACAGAAGAACTGGGCAAAGAAAACGTAGACTCTAACAATAATAAAGC 1881
|||||||||| | |||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 1778 AAGTGTGTTG--A-CAGAAGAATTGGGCAAAGAAAACGTAGACTCGAACAATAATACAGA 1834
Query 1882 TGAGGGTCAAGAAGAAAGCCTAGACATGATCTTGGTAAAGCCGGTTCACAGATTAGAAAC 1941
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1835 TGCGGGTCAAGAAAAAAGCCTAGACAAGATCTTGGTAAAGCCGGTTCACAGATTAGAGAC 1894
Query 1942 AGAAAAAATTGCATCGGAAGCAGTTTATGGAAACCGGAGGATTCAGAAGAGAAAACAAGG 2001
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1895 AGAAAAAATTGCATGGGAAGCAGTTTATGGAAACAGGAGGATTCAGAAGAGAAAACAAGC 1954
Query 2002 AGCAAAAACAGAGTCAAATTATGAGAGTTTGGACAAAATTCTGGTGAAACATGTTCCAAA 2061
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1955 AGCAAAAACAGAGTCAGATTATGAGAGTTTGGACAAAATTCTGGTGAAACATGTTCCCAA 2014
Query 2062 GCTAGAGAAGGAGAAGC--AGATGTTCAAAGCTGGTGTAGAAGAGACGGAGAACTCAAAG 2119
| | ||||||||||||| |||| | ||||||||| ||||| |||||||| ||||||||
Sbjct 2015 GTTGGAGAAGGAGAAGCTCAGAT-T-CAAAGCTGGAGTAGAGGAGACGGAAAACTCAAAA 2072
Query 2120 AGA-AATAATGAAGGGAGCTTGAA-C---CAG-GGACA----T-----G--AA---A--G 2157
| | |||||||||| |||||||| | ||| ||| | | | || | |
Sbjct 2073 A-ACAATAATGAAGATAGCTTGAAGCAAACAGTGGAGAAAAATAACCAGGGAACCGAAAG 2131
Query 2158 CATGAAGGTGGCAAAACCGA-TTCTCAGCAGGCGCCAAATGAGGGATAAAGAAATACAAG 2216
||||||| |||||||||||| || | | ||| | ||| ||||||||| |||| ||||||
Sbjct 2132 CATGAAGATGGCAAAACCGAGTTTT-ACCAGACAACAATTGAGGGATAGAGAACTACAAG 2190
Query 2217 AAACTTGGGGTGGTTTAGGACTTGGGGAGTCAAAGAACAATAACCAGAAGAAACCTGAAA 2276
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2191 AAACTTGGGGTGGTTTAGCCCTTGGGGAGTCAAAGAACAATAACCAGAAGAGACCTGAAA 2250
Query 2277 GCAAGAAAACAGAAGCTACTGAGAATTT-GG-G-AGAAGAGACAAGACCGGTCCTAACTA 2333
|||||||||||||| |||||||| |||| || | |||||||||||||||||| |||||||
Sbjct 2251 GCAAGAAAACAGAAACTACTGAGCATTTAGGAGGAGAAGAGACAAGACCGGTGCTAACTA 2310
Query 2334 GACGACAAGAGAGGGACAGAGAAATGCTAGAAGCTTGGGGTGGTTTAGGACTTGGGGACT 2393
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GACGACAAGAGAGGGACAAAGAAATGCTAGAAGCTTGGGGTGGTTTAGGACTTGGGGACT 2370
Query 2394 CAACCTCGTACCAACCAGTTAATAAGAATAAAAGGAAACCTGAAAGCGAGAAGATGGAGA 2453
||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2371 CAAGCTTGTACCAAACAGTTAATAAGCATAAAAGGAAACCTGAAAGCGAGAAGATGGAGA 2430
Query 2454 CAGCAACACCATTGCTAACAAGAAGACAAGCACGGGATAGAGAAATGCAAGAAGCTTGGG 2513
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2431 CAGCAACACCATTGTTAACAAGAAGACAAGCAAGGGATAGAGAAATGCAAGAAGCTTGGG 2490
Query 2514 GTGGTTTAGACCTCGGAAACTCGATTCGACCGAGTCTGTCAAAACTCGAAAGAGAAAAGG 2573
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2491 GTGGTTTAGATCTCGGAAACTCAATTCGACCGAGTCTGTCAAAACTCGAAAGAGAAAAGG 2550
Query 2574 CTGCATGGATTAAGGCCGAGAAAGAGGAAACGACTCGAGGAAACTAAT 2621
||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2551 CTGCATGGAGTAAGGCAGAGAAAGAGGAAACGACTCGAGGAAACTAAT 2598
Score = 145 bits (78), Expect = 2e-33
Identities = 91/97 (94%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2699 TCTAGCTAGATTCAAGAAATATTGGGTAAATTTCATTTGGTAACAGTTGTAGAATGTATG 2758
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2662 TCTAGCTAGTTTCAAGAAATATTGTGTAAATTTCATTTGGTAACAGTTGTAGAGTGTATG 2721
Query 2759 TAATAAAG-TTTTCTTTGTTAGGGACCAAtttttttt 2794
||||||| |||| |||||||||||||||||||||||
Sbjct 2722 CAATAAAGATTTT-TTTGTTAGGGACCAATTTTTTTT 2757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107490671390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5