BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49880.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923422 jgi|Araly1|923422|scaffold_104703.1 883 0.0
Ahg923523 jgi|Araly1|923523|scaffold_104804.1 230 2e-59
> Ahg923422 jgi|Araly1|923422|scaffold_104703.1
Length=609
Score = 883 bits (478), Expect = 0.0
Identities = 565/605 (93%), Gaps = 14/605 (2%)
Strand=Plus/Plus
Query 53 AAACaaaaa-a-aGATGGGTGAGAAGCCATGGCAGCCACTACTCCAGAGCTTCGAGAAAC 110
||| ||||| | ||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 12 AAAAAAAAAGAGAGATGGGTGAGAACCCATGGCAGCCACTTCTGCAGAGCTTCGAGAAAC 71
Query 111 TATCAAATTGCGTCCAAACTCATCTTTCCAATTTCATCGGCATCAAGAATACTCCTCCTA 170
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 72 TATCAAATTGCGTCCAAACTCATCTTTCCAATTTCATCGGCATCAAG-A-A-------TA 122
Query 171 GTTCTCAATCCACAATCCAAAACCCAATCATCTCCTTGGACTCTTCTCCGCCAATCGCAA 230
||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 123 ---CTCAATCCAGAATCCAAAACCCAGTCATCTCCTTGGAATCTTCTCCACCAATCGCAA 179
Query 231 CAAACAGTTCCAGTCTTCAGAAACTTCCTCTCAAGGACAAGTCTACTGGTCCTGTGACTA 290
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 180 CCAACAGTTCCAGTCTTCAGAAACTTCCTCTTAAGGACAAGTCTACAGGTCCTGTGACTA 239
Query 291 AAGAGGATCTCGGGAGAGCTACATGGACGTTTCTTCACACTCTTGCTGCGCAGTATCCAG 350
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 240 AAGAGGACCTCGGAAGAGCTACATGGACATTTCTTCATACTCTTGCTGCGCAGTATCCAG 299
Query 351 AAAAACCAACAAGGCAGCaaaaaaaGGATGTTAAAGAGCTGATGACGATACTTTCCCGAA 410
|||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||
Sbjct 300 AAAAACCAACAAGGCAGCAAAAAAGGGATGTTAAAGAATTGATGGCGATACTTTCTCGAA 359
Query 411 TGTATCCTTGTAGAGAATGTGCGGATCACTTCAAAGAAATCCTAAGATCGAATCCCGCAC 470
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTACCCTTGTAGAGAATGTGCAGATCACTTCAAAGAAATCCTAAGATCGAATCCCGCAC 419
Query 471 AAGCTGGATCTCAGGAGGAATTCTCACAGTGGCTTTGCCATGTACACAACACCGTAAATA 530
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 AAGCTGGATCTCAGGAGGAATTCTCGCAGTGGCTTTGCCATGTACACAACACCGTAAATA 479
Query 531 GAAGTTTGGGGAAATTGGTGTTCCCTTGCGAGAGAGTGGATGCAAGATGGGGCAAGTTAG 590
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAAGTTTGGGGAAGTTGGTGTTCCCTTGCGAGAGAGTGGATGCAAGATGGGGCAAGTTAG 539
Query 591 AGTGTGAGCAGAAAAGTTGTGATCTCCATGGAACTTCTATGGACTTTTAGACCCATTTAT 650
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 540 AGTGTGAGCAGAAAAGTTGTGATCTCCATGGAACTTCAATAGACTTTTAGACCCATTTAT 599
Query 651 TAACT 655
|||||
Sbjct 600 TAACT 604
> Ahg923523 jgi|Araly1|923523|scaffold_104804.1
Length=319
Score = 230 bits (124), Expect = 2e-59
Identities = 159/176 (90%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 262 CAAGGACAAGTCTACTGGTCCTGTGACTAAAGAGGATCTCGGGAGAGCTACATGGACG-T 320
||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 122 CAAAGACAAGACTACAGGTCCTGTGACTAAAGAGGATCTCGGGAGAGCTACATGGA-GAT 180
Query 321 TTCTTCACACTCTTGCTGCGCAGTATCCAGAAAAACCAACAAGGCAGCaaaaaaaGGATG 380
|||| || |||||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct 181 TTCTGCATACTCTTGCTGCGAAGTATCCAGAAAAACCAACAAAGCAGCAAAACAAGGATG 240
Query 381 TTAAAGAGCTGATGACGATACTTTCCCGAATGTATCCTTGTAGAGAATGTGCGGAT 436
| ||||| ||||| |||||||||| |||||||| ||| |||||||||||||||||
Sbjct 241 TCAAAGATTTGATGGCGATACTTTCTCGAATGTACCCTAGTAGAGAATGTGCGGAT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5