BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49890.1
Length=2547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923423 jgi|Araly1|923423|scaffold_104704.1 3323 0.0
Ahg479470 jgi|Araly1|479470|fgenesh2_kg.3__2171__AT3G19570.2 1596 0.0
> Ahg923423 jgi|Araly1|923423|scaffold_104704.1
Length=2023
Score = 3323 bits (1799), Expect = 0.0
Identities = 1956/2029 (96%), Gaps = 21/2029 (1%)
Strand=Plus/Plus
Query 191 AGTTTTTTCCGACGAGAATGGTTGCTGCAGCGATTTCAACCACTGACCCAAGAAACCCAC 250
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4 AGTTTTTCCCGACGAGAATGGTGGCTGCAGCGATTTCAACCACTGACCCAAGAAACCCAC 63
Query 251 CTCGAGAT---C--G----ACCTCAATCTCTT-ACCAACAATGGCGGACAAAGAAGACCC 300
|||||||| | | ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 64 CTCGAGATCGACAAGATAAACCTCAATC-CTTAACCAACAATGGCGGACAAAGAAGACCC 122
Query 301 AGAGGCAAACAAGTTCCTTCTCGCTACTTATCTCCTTCTCCGTCTCACTCTGTCTCTTcc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 123 AGAGGCAAACAAGTTCCTTCTCGCTACTTATCTCCTTCTCCTTCTCACTCTGTCTCTT-- 180
Query 361 accaccactaccactaccactactaccaccaccaccTCTTCTTCCTCCTCTTCTTCTTCC 420
||| || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 181 -CCA--AC-ACCACTACCACTACCACCACTACCACGTCTTCTTCCTCCTCTTCTTCTTCC 236
Query 421 TCTGCAATACTCAGAACTAGTAAACGATACCCATCTCCTTCGCCTTTACTCTCTCGCTCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTGCAATACTCAGAACTAGTAAACGATACCCATCTCCTTCGCCTTTACTCTCTCGCTCC 296
Query 481 ACGACGAATTCCGCTTCCAATTCGATCAAAACGCCGTCTTTGTTACCTAAACGGTCTCAA 540
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 297 ACGACGAATTCCGCTTCTAATTCCATCAAAACGCCTTCTTTGTTACCTAAACGGTCCCAA 356
Query 541 TCAGTGGACCGTCGTCGACCCTCGGCGGTTTCGGTCACTGTAGGCACTGAAATGTCGGCG 600
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 357 TCAGTGGACCGTCGTCGACCCTCGGCGGTTCCGGTCACTGTAGGCAGTGAAATGTCGGCG 416
Query 601 GCTACGAAGATGCTTATCACTTCCACTAGGAGTTTGTCTGTTTCGTTTCAAGGTGAAGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTACGAAGATGCTTATCACTTCCACTAGGAGTTTGTCTGTTTCGTTTCAAGGTGAAGCC 476
Query 661 TTTTCTCTTCCGATTAGTAAAAAGAAAGAGACTACTTCTACGCCGGTTTCTCACCGGAAA 720
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 477 TTTTCTCTTCCGATTAGTAAAAAGAAAGAGGCTACTACTACGCCGGTTTCTCACCGGAAA 536
Query 721 TCTACTCCGGAGCGACGGAGATCGACGCCGGTTCGAGATCAGAGAGAGAACTCTAAGCCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTACTCCGGAGCGACGGAGATCGACGCCGGTTCGAGATCAGAGAGAGAACTCTAAGCCT 596
Query 781 GTGGACCAACAACGCTGGCCTGGAGCCTCACGGAGGGGGAATTCTGAATCTGTTGTGCCG 840
||||| || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 597 GTGGATCAGCAACGGTGGCCTGGAGCTTCACGGAGGGGGAATTCCGAATCTGTTGTGCCG 656
Query 841 AATTCGCTTTCTAGAAGCTTAGATTGTGGTAGTGATAGAGGAAAGCTTGGATCTGGGTTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AATTCGCTTTCTAGAAGCTTAGATTGTGGTAGTGATAGAGGAAAGCTTGGATCTGGGTTT 716
Query 901 GTTGGGAGGTCAATGTTGCATAATTCTATGATTGATGAGAGTCCTAGGGTTTCTGTTAAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTTGGGAGGTCAATGTTGCATAATTCTATGATTGATGAGAGTCCTAGGGTTTCTGTTAAT 776
Query 961 GGGAGATTGAGTTTAGATTTGGGAGGTAGGGATGAATATTTGGATATTGGAGATGATATC 1020
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 777 GGGAGATTGAGTTTAGATTTGGGAGGTAGGGATGAATATTTGGAAATTGGAGATGAGAGC 836
Query 1021 CAGAGAAGACCAAATAATGGTCTGACGTCTAGTGTTTCCTGTGACTTT-ACTGCTTCTGA 1079
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 837 CAGAGAAGACCAAATAATGGTTTGACGTCTAGTGTTTCCTGTGA-TTTCACTGCTTCTGA 895
Query 1080 TACTGATAGTGTTTCTTCTGGTAGCACTAATGGTGTTCAAGAATGTGGCTCTGGTGTTAA 1139
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 896 TACTGATAGTGTTTCTTCTGGTAGCACTAGTGGTGTTCAGGAATGTGGCTCTGGTGTTAA 955
Query 1140 TGGTGAAATCTCTAAATCAAAGAGCTTGCCTCGTAATATTATGGCTTCTGCTAGGTTCTG 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 TGGGGAAATCTCTAAATCAAAGAGCTTGCCTCGTAATATTATGGCTTCTGCTAGGTTTTG 1015
Query 1200 GCAAGAGACTAATAGCCGGTTAAGGCGGTTGCAGGATCCAGGTTCGCCTTTATCCTCTAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCAAGAGACTAATAGCCGGTTAAGGCGGTTGCAGGATCCAGGTTCGCCTTTATCCTCTAG 1075
Query 1260 CCCGGGTTTGAAAACCAGTAGTATATCTTCAAAGTTTGGTCTTTCGAAACGGTTTTCTAG 1319
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCCGGGTTTGAAAACCAGTAGTGTATCTTCAAAGTTTGGTCTTTCGAAACGGTTTTCTAG 1135
Query 1320 CGATGCTGTTCCTTTATCATCTCCTCGTGGTATGGCTTCTCCTGTAAGAGGTTCTGCTAT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CGATGCTGTTCCTTTATCATCTCCTCGTGGTATGGCTTCTCCTGTAAGAGGTTCTGCTAT 1195
Query 1380 ACGCTCTGCTTCACCAAGTAAGCTTTGGGCGACAACTACGTCATCTCCAGCTAGAGCTCT 1439
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1196 TCGCTCTGCTTCACCAAGTAAGCTTTGGGCGACAACTACCTCATCTCCAGCTAGAGCGCT 1255
Query 1440 TTCGAGCCCTTCTCGAGCT-AGAAATGGAGTTTCTGATCAAATGAACGCTTATAACCGCA 1498
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCGAGTCCTTCTCGAG-TGAGAAATGGAGTTTCTGATCAAATGAACGCTTATAACCGCA 1314
Query 1499 ACAACACGCCTTCAATTCTTAGTTTCTCTGCTGATATTAGGAGAGGGAAAATTGGGGAGG 1558
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1315 ACAATACGCCTTCAATTCTTAGTTTCTCTGCTGATATTAGGAGAGGTAAAATTGGGGAGG 1374
Query 1559 ATCGTGTTATGGATGCACATTTGTTGAGGCTTCTATATAACCGTGACCTGCAGTGGCGGT 1618
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1375 ATCGTGTTATGGATGCACATTTGTTGAGGCTTCTATATAACCGTTACCTGCAGTGGCGTT 1434
Query 1619 TTGTCAATGCGAGGGCAGACTCTACTGTTATGGTGCAAAGGTTGAACGCAGAGAAAAACC 1678
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1435 TTGTCAATGCGAGGGCAGATTCTACTGTTATGGTGCAAAGATTGAACGCAGAGAAAAACC 1494
Query 1679 TGTGGAATGCATGGGTATCAATCTCGGAACTGCGGCACAGTGTCACTTTAAAACGAATCA 1738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1495 TGTGGAATGCATGGGTATCAATCTCGGAATTGCGGCACAGTGTCACTTTAAAACGAATCA 1554
Query 1739 AGTTGCTTTTGCTAAGGCAGAAATTGAAACTGGCTTCTATTCTGAGGGGACAGATGGGTT 1798
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1555 AGTTGCTTTTGCTAAGGCAGAAATTGAAACTGGCTTCTATTTTGAGGGGACAGATGGGTT 1614
Query 1799 TTCTAGAAGAATGGTCTCTTCTGGATAGAGATCATTCAAGTTCTTTGTCAGGAGCAACCG 1858
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1615 TTCTAGAAGAATGGTCTCTTCTGGATAGAGATCATTCAAGTTCTCTGTCTGGAGCAACCG 1674
Query 1859 AATCCTTGAAAGCCAGCACACTTCGTCTACCAATAGTTGGAAAAACCGTGGTTGATATTC 1918
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1675 AATCCTTGAAAGCCAGTACGCTTCGTCTACCAATAGTTGGAAAAACCGTGGTTGATATCC 1734
Query 1919 AAGACCTCAAGCATGCTGTTAGTTCAGCCGTCGATGTAATGCAAGCTATGTCATCTTCCA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AAGACCTCAAGCATGCTGTTAGTTCAGCCGTCGATGTAATGCAAGCTATGTCATCTTCCA 1794
Query 1979 TATTCTCACTGACGTCGAAGGTGGATGAGATGAATTCTGTAATGGTGGAAACCGTGAATG 2038
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1795 TATTCTCACTGACGTTGAAGGTGGATGAGATGAATTCTGTAATGGTCGAAACCGTGAATG 1854
Query 2039 TAACTGCTAAAGAAAAGGTTTTGCTTGAAAGATGTCAAGGTTGCTTATCAAGAGTAGCAG 2098
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1855 TAACTGCTAAGGAAAAGGTTTTGCTTGAAAGATGTCAAGGTTGCTTATCAAGCGTAGCAG 1914
Query 2099 CTATGCAGGTTACTGATTGTAGCATGAAAACGCATATAATACAACTAAGTCGGATACCAA 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CTATGCAGGTTACTGATTGTAGCATGAAAACGCATATAATACAACTAAGTCGGATACCAA 1974
Query 2159 TCACAAGCAGCTTGACTCCGCAATTGTAGAAAAACTGATCTTCCTCAAG 2207
||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1975 TCACAAGCAGCTTGACTTCACAACTGTAGAAAAACTGATCTTCCTCAAG 2023
> Ahg479470 jgi|Araly1|479470|fgenesh2_kg.3__2171__AT3G19570.2
Length=2628
Score = 1596 bits (864), Expect = 0.0
Identities = 1543/1858 (83%), Gaps = 97/1858 (5%)
Strand=Plus/Plus
Query 385 accaccaccac--cT-CTTCTTCCTCCTCTTCTTCTTCCTCTGCAATACTCAGAACTAGT 441
||||||||||| || | ||| | |||||||||||||| ||||| |||| || || |||
Sbjct 466 ACCACCACCACTGCTACATCTACTTCCTCTTCTTCTTCGTCTGCGGTACTGAGGACAAGT 525
Query 442 AAACGATACCCATCTCCTTCGCCTTTACTCTCTCGCTCCACGACGAATTCCGCTTCCAAT 501
|| |||| | |||||| ||||| |||||||||| |||||||||| ||||| |||
Sbjct 526 AAGCGAT----A--TCCTTCCCCTTTGCTCTCTCGCT---CGACGAATTCTGCTTCTAAT 576
Query 502 TCGATCAAAACGCCGTCTTTGTTACCTAAACGGTCTCAATCAGTGGACCGTCGTCGACCC 561
| | | || ||||| || | ||| || |||||||||||||| |||||||||||||| ||
Sbjct 577 TTGGTTAAGACGCCTTCCTCGTTGCCCAAACGGTCTCAATCGGTGGACCGTCGTCGTCCG 636
Query 562 TCGGCGGTTTCGGTCACTGTAGGCACTGAAATGTCGGCGGCTACGAAGATGCTTATCACT 621
||||| ||||| | ||| | | || |||||||||||||| ||||||||||||||||||
Sbjct 637 TCGGCAGTTTCTGACAC--CA-GAACCGAAATGTCGGCGGCGACGAAGATGCTTATCACT 693
Query 622 TCCACTAGGAGTTTGTCTGTTTCGTTTCAAGGTGAAGCCTTTTCTCTTCCGATTAGTAAA 681
|| ||||||||||| |||||||| |||||||| || || ||||||||||||||||||||
Sbjct 694 TCTACTAGGAGTTTATCTGTTTCTTTTCAAGGAGAGGCGTTTTCTCTTCCGATTAGTAAG 753
Query 682 AAGAAAGAGACTACTTCTACGCCGGTTTCTCACCGGAAATCTACTCCGGAGCGACGGAGA 741
||||| |||||||| | ||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct 754 AAGAAGGAGACTAC--C-ACGCCTGTTTCTCACCGGAAATCTACTCCTGAGAGGCGGAGA 810
Query 742 TCGACGCCGGTTCGAGATCAGAGAGAGAACTCTAAGCCTGTGGACCAACAAC-GCTGGCC 800
|||| || |||||||||||||| ||||| |||||||| ||||| || |||| | |||||
Sbjct 811 GCGACACCTGTTCGAGATCAGAGGGAGAATTCTAAGCCGGTGGATCAGCAACTG-TGGCC 869
Query 801 TGGAGCCTCACGGAGGGGGAA-TTCTGAATCTGTTGTGCCGAATTCGCTTTCTAGAAGC- 858
|| || || |||| |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 870 AGGTGCTTCTCGGA-GGGGAAGTTCTGACTCTGTTGTGCCGAATTCGCTTTCTAGAAGCG 928
Query 859 TTAGATTGTGGTAGTGATAG-A--GGAAAGCTTGGATCTGGGTTTGTTGGG-AGGTCAAT 914
| | |||||| |||||||| | || |||||||||||||| |||| |||| ||||||||
Sbjct 929 TGA-ATTGTGACAGTGATAGTAGTGGGAAGCTTGGATCTGGCTTTG-TGGGAAGGTCAAT 986
Query 915 GTTGCATAATTCTATGATTGATGAGAGTCCTAGGGTTTCTGTTAATGGGAGATTGAGTTT 974
||||| | | ||| | ||||| |||||||||||||| ||| |||||||| |||
Sbjct 987 GTTGC---A-GC----ATT-CTCAGAGTTCTAGGGTTTCTGTTGATGAGAGATTGAATTT 1037
Query 975 AGATTTGGGAGGTAGG-GAT-GAATATTTGGATATTG-GAGATGATATCCAGAGAAGACC 1031
|||||| ||||| ||| ||| |||| |||||| | || ||||||| | | ||| ||||||
Sbjct 1038 AGATTTTGGAGG-AGGTGATGGAAT-TTTGGA-AATGAGAGATGAGAGCAAGACAAGACC 1094
Query 1032 -A--A-ATA---ATGGTCTGACG-TCTAGTGTTTCCTGTGACTTTACTGCTTCTGATACT 1083
| | ||| | | || | ||||||||||| |||||||||||||| |||||||||
Sbjct 1095 AAGCACATATCCAAAAT-TG-GGTTCTAGTGTTTCGTGTGACTTTACTGCATCTGATACT 1152
Query 1084 GATAGTGTTTCTTCTGGTAGCACTAATGGTGTTCAAGAATGTGGCTCTGGTGTTAATGGT 1143
||||||||||| ||||||||||||||||||| || |||||| | |||||||| ||||||
Sbjct 1153 GATAGTGTTTCATCTGGTAGCACTAATGGTGCGCAGGAATGTTGTTCTGGTGTCAATGGT 1212
Query 1144 GAAATCTCTAAATCAAAGAGCTTGCCTCGTAAT-AT--TATGGCTTCTGCTAGGTTCTGG 1200
|| | |||||| ||| ||||||||| |||||| || |||||||||||||| ||||||
Sbjct 1213 GAGGTTTCTAAAACAAGGAGCTTGCCGCGTAATAATGCTATGGCTTCTGCTAAATTCTGG 1272
Query 1201 CAAGAGACTAATAGCCGGTTAAGGCGGTTGCAGGATCCAGGTTCGCCTTTATCCTCTAGC 1260
||||||||||||||||||||||||||||| |||||||| || || ||| || ||||||
Sbjct 1273 CAAGAGACTAATAGCCGGTTAAGGCGGTTTCAGGATCCTGGCTCACCTCGATGTTCTAGC 1332
Query 1261 CCGGGTTTGAAAACCAGTAGTATATC-T--TCAAAGTTTGGTCTTTCGAAACGGTTTTCT 1317
|| ||| || || ||||||||| || | |||||||| ||| ||||||||||| |||
Sbjct 1333 CCAAGTTCGAGAATCAGTAGTATCTCATCATCAAAGTTCAGTCAATCGAAACGGTTCTCT 1392
Query 1318 AGCGATGCTGTTCCTTT-A--TCATCTCCTCGTGGTATGGCTTCTCCTGTAAGAGGTTCT 1374
|| ||| || || || | ||||||||||| |||||| ||||||| |||| ||| ||
Sbjct 1393 AGTGATA--GT-CCGTTGACATCATCTCCTCGCGGTATGACTTCTCCAATAAGGGGTGCT 1449
Query 1375 GCTATACGCTCTGCTTCACCAAGTAAGCTTTGGGCGACAACTACGTCATCTCCAGCTAGA 1434
|| ||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||||
Sbjct 1450 TCT---CGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAACTCCAGCTAGG 1506
Query 1435 GCTCTTTCGAGCCCTTCTCGAGCT-AGAAATGGAGTTTCTGATCAAATGAACGCTTATAA 1493
|| ||||| || ||||| |||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 1507 GCACTTTCTAGTCCTTCCCGAG-TGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1565
Query 1494 CCGCAACAACACGCCTTCAATTCTTAGTTTCTCTGCTGATATTAGGAGAGGGAAAATTGG 1553
||||| | | ||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1566 CCGCA-C--CTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGGAAAATTGG 1622
Query 1554 GGAGGATCGTGTTATGGATGCACATTTGTTGAGGCTTCTATATAACCGTGACCTGCAGTG 1613
||||||||| ||||||||||| || |||||||||||||| ||||||||| ||||||| ||
Sbjct 1623 GGAGGATCGCGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTTACCTGCAATG 1682
Query 1614 GCGGTTTGTCAATGCGAGGGCAGACTCTACTGTT-ATGGTGCAAAGGTTGAACGCAGAGA 1672
|||||||| |||||||||||| ||||||||| || ||||| || || ||| |||||||
Sbjct 1683 GCGGTTTGCCAATGCGAGGGCGGACTCTACT-TTCATGGTACATAGACTGAGTGCAGAGA 1741
Query 1673 AAAACCTGTGGAATGCATGGGTATCAATCTCGGAACTGCGGCACAGTGTCACTTTAAAAC 1732
||||||| ||||| ||||||||||||||||||||||| || || ||||||| | ||||
Sbjct 1742 AAAACCTCTGGAACGCATGGGTATCAATCTCGGAACTACGCCATTCTGTCACTCTGAAAC 1801
Query 1733 GAATCAAGTTGCTTTTGCTAAGGCAGAAATTGAAACTGGCTTCTATTCT-GAGGG-GACA 1790
| ||||||||||||||||| ||||| ||| ||||||| ||||| || || || || | ||
Sbjct 1802 GGATCAAGTTGCTTTTGCTGAGGCAAAAACTGAAACTAGCTTCCAT-CTTGAAGGAG-CA 1859
Query 1791 GATGGGTTTTCTAGAAGAATGGTCTCTTCTGGATAGAGATCATTCAAGTTCTTTGTCAGG 1850
||| |||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 1860 GATTGGTTATCTAGAAGAATGGTCTCTTATGGACAGAGATCATTCAAATTCTTTGTCAGG 1919
Query 1851 AGCAACCGAATCCTTGAAAGCCAGCACACTTCGTCTACCAAT-AGTTGGAAAAACCGTGG 1909
||| || ||| | |||||||| ||||| |||||||| ||||| ||| |||||| || |||
Sbjct 1920 AGCGACTGAAGCTTTGAAAGCGAGCACGCTTCGTCTTCCAATTAGT-GGAAAAGCCTTGG 1978
Query 1910 TTGATATTCAAGACCTCAAGCATGCTGTTAGTTCAGCCGTCGATGTAATGCAAGCTATG- 1968
||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1979 TTGATATTCAAGATCTCAAGCATGCTGTTAGTTCAGCCGTTGATGTCATGCACGCTATGG 2038
Query 1969 TCATCTTCCATATTCTCACTGACGTCGAAGGTGGATGAGATGAATTCTGTAATGGTGGAA 2028
| ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||| ||||
Sbjct 2039 TG-TCTTCGATTTTCTCGCTGACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCGGAA 2097
Query 2029 ACCGTGAATGTAACTGCTAAAGAAAAGGTTTTGCTTGAA-AGATGTCAAGG-TTGCTTAT 2086
| |||||| | ||||| |||||||| |||||||||||| || |||||||| || |||||
Sbjct 2098 ATGGTGAATATCACTGCGAAAGAAAATGTTTTGCTTGAACAG-TGTCAAGGATT-CTTAT 2155
Query 2087 CAAGAGTAGCAGCTATGCAGGTTACTGATTGTAGCATGAAAACGCATATAATACAACTAA 2146
||||||||||||| |||||||| || || || |||||||| ||||| |||||||||||||
Sbjct 2156 CAAGAGTAGCAGCAATGCAGGTAACGGACTGCAGCATGAAGACGCACATAATACAACTAA 2215
Query 2147 GTCGGATACCAATCACAAGCAGCTTGACTCCGCAATTGTAGAAAAACTGATCTTCCTC 2204
| |||||| || | ||| | || |||| | ||| |||||||| ||||||| ||||
Sbjct 2216 GCCGGATATAAA-C-CAA-C--CT-GACTTCACAACTGTAGAAA--CTGATCT-CCTC 2264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96025507645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5