BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49900.1
Length=2954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314403 jgi|Araly1|314403|fgenesh1_pm.C_scaffold_1003183 774 0.0
> Ahg314403 jgi|Araly1|314403|fgenesh1_pm.C_scaffold_1003183
Length=2508
Score = 774 bits (419), Expect = 0.0
Identities = 674/790 (85%), Gaps = 46/790 (6%)
Strand=Plus/Plus
Query 1973 atgatgatgatgttgatCCTTCCTCCAAAGACATACGTTTAGAA--GA--AGAAAACG-A 2027
|||||||||||| |||| |||||| | | ||| | |||||||| || | || | |
Sbjct 1757 ATGATGATGATGATGATTCTTCCTTTACACACACAGGTTTAGAATCGATCCGGCAA-GAA 1815
Query 2028 GTGTGAAAACAGAGCCGTTATTAGGCCTAGCTTGAATAGTGTAGCACCAAATCAACAGCG 2087
| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1816 G-AAGAATACAGAGCCGTTATTAGGCCTTGGTTGGTTAGTGTAGCACCAAATCAACAGCG 1874
Query 2088 TTTTGGTGATGATGAAGTTCcttcttcttcttcttctctctCCAAAGATGAAACCGCTGC 2147
||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||
Sbjct 1875 TTTTGGTGATGATGAAG-T--TTCTTCTTCTTCTTCTCTCTCTGAGGATGAAACCGCTGC 1931
Query 2148 TCTCTGTCCCACACCGCATTCACAAACACAACCGCAATCGCAAACCCAACTGCAAAAGGT 2207
| || | | | | ||| ||| |||||||| | ||| || |
Sbjct 1932 TATC--T--------G---T--C--ACA-AACGGCAATCGC--A---AAC-GC---A--- 1961
Query 2208 GACCCAACCTCAAACGCAGATGCTGCCTAAGTCTGAT-TC-TTACCAGTGCAACGTCTGT 2265
|||||||||||| | ||||||||||||||||||||| | ||| |||||| |||||||
Sbjct 1962 CACCCAACCTCAACCACAGATGCTGCCTAAGTCTGATCCCTTTA--AGTGCAGCGTCTGT 2019
Query 2266 GGAAGAGAGTTGCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTAGCCACAGGACTAAG 2325
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2020 GGAAAAGAGTTTCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTGGCCACAGGGTTAAG 2079
Query 2326 CCGCCTGTTGAAAACGCAACTGGGGAAAAAATGCGGCCAAAGAAGTTGGCCCCATCTGGG 2385
||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||
Sbjct 2080 CCGCCTGTTGAAAACGCAACTGGAGAAAAAACACGGCCAAAGAGGTTAGCTCCATCTGGG 2139
Query 2386 AAAATCCACAAGTGTTCTATTTGTCACCGAGAGTTTTCAACGGGACAATCCCTCGGTGGA 2445
|||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||
Sbjct 2140 AAAATCCACAAGTGTTCTATTTGTCATAGATTGTTTCCAACGGGACAATCCCTCGGGGGA 2199
Query 2446 CACAAACGCCTTCATTACGAAGGAGTTCTCCGCGGTCACAAACGCAGCCAGGA-GAAGGA 2504
||||||||||||||||||||||| |||||| |||||||||||||||||||||| | ||||
Sbjct 2200 CACAAACGCCTTCATTACGAAGGTGTTCTCAGCGGTCACAAACGCAGCCAGGACG-AGGA 2258
Query 2505 GGCTGTTTCCCAAGGAGACAAGTTGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2564
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2259 GGCTGGTTCCCAAGGAGACAAGTCGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2318
Query 2565 ACCTGACCCAAAGCAGAGCCGAAAGGGATTGATAGTTATTAATAAAGTGCCATCGCCGGA 2624
| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||
Sbjct 2319 ATCTGACCCAAAGCAGAGCCTAAAGGGATTGATAGATATTAATACAGTGCCATCGCCAGA 2378
Query 2625 GTTTAATGATCCCGGCGACAAAGACATATTGGAGGGTGAAAGTGCATTGTTAGCAAACAA 2684
||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2379 GTTTAATGAACCCGGGGACAAAGACATAGTGGAGGTTGAAAGTGCATTGTTAGCAAACAA 2438
Query 2685 GCTTGAACAAGATAGAGGAATTACCAGTACTCGCATGATTAACGgtttgaaattttttaa 2744
|||| ||||||| ||||||||||||| |||| || ||| || ||||| | ||||||||
Sbjct 2439 GCTTCAACAAGAAAGAGGAATTACCAATACTAACAGGATAAAGGGTTTTCATTTTTTTAA 2498
Query 2745 ctttctgtaa 2754
|||| |||||
Sbjct 2499 CTTTATGTAA 2508
Score = 459 bits (248), Expect = 7e-128
Identities = 342/387 (88%), Gaps = 8/387 (2%)
Strand=Plus/Plus
Query 555 GGCGCCTCCTAAGTCTGATTTGTTCAAGTGTAGCATCTGTGAAAAAGTGTTTACTTCGTA 614
|||||| || |||| |||||||||| ||||||| |||||| ||||| ||||||||||||
Sbjct 522 GGCGCCGCCGAAGTTTGATTTGTTCGAGTGTAGTGTCTGTGGAAAAGGGTTTACTTCGTA 581
Query 615 TCAAGCTTTAGGTGGTCACAAAGCTAGCCACAGTATTAAGGCCG-CGCAA---C-T-T-G 667
|||||| |||||||||||||| || |||||||| |||| || | | ||| | | | |
Sbjct 582 TCAAGCATTAGGTGGTCACAAGGCCAGCCACAGGGTTAA-GCAGCCACAACCGCTTATGG 640
Query 668 AAAACGCAGGCGCAGACGCTGGAGAAAAAACGCGGTCAAAGATGTTGTCACCGTCTGGGA 727
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 641 AAAACGCAGGCGCAGACGCTGGAGAGAAAACGCGGTCAAAGATGTTGTCTCCGTCTGGGA 700
Query 728 AAATCCACAAGTGTGATATATGTCATGTTCTGTTTCCCACCGGACAAGCCCTAGGTGGAC 787
||||||||||||||||||||||||||||| ||||| |||| |||||||| || |||||||
Sbjct 701 AAATCCACAAGTGTGATATATGTCATGTTGTGTTTGCCACGGGACAAGCACTTGGTGGAC 760
Query 788 ACAAACGCCGTCACTACGAAGGCCTTCTCGGCGGTCACAAACGCGGTAATGACGAGGCTG 847
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||
Sbjct 761 ACAAACGCCGTCACTACGAAGGCGTTCTCGGCGGTCACAAACACGGTAATGCCGAGGTTG 820
Query 848 TTCTCAAGTTGAGTCCCAATAGCAATAAGAGCGTTGTAACAAAAGTGTTAGATGCAGAAC 907
|||||||||| |||||||||| ||| |||| |||||||||||||||||||| ||| ||
Sbjct 821 TTCTCAAGTTAAGTCCCAATAAAAATGGGAGCATTGTAACAAAAGTGTTAGATCCAGGAC 880
Query 908 AGAGTTTAAGGGCAAGTGACAACATTC 934
||||||||| || |||||||||| |||
Sbjct 881 AGAGTTTAATGGTAAGTGACAACGTTC 907
Score = 283 bits (153), Expect = 5e-75
Identities = 212/238 (89%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 1006 AATGTGTTGGATCTAAAGCTGAGCCTAGGGGAAAGTGAC-G-G----CG---GTCACAAA 1056
||||||||||||||||||||||||||| | ||||||||| | | || || |||||
Sbjct 919 AATGTGTTGGATCTAAAGCTGAGCCTAAGTGAAAGTGACGGAGTTCTCGTCAGTGACAAA 978
Query 1057 GACAGTCAGGACGAGGTTGTT-GTTCATGAAGACAAGTGTAGTCCTAGTAGCAATGGGAG 1115
| |||||||||| |||||||| | | | ||||||||||||||||||||||| ||||||||
Sbjct 979 GGCAGTCAGGACCAGGTTGTTCG-TGAGGAAGACAAGTGTAGTCCTAGTAGTAATGGGAG 1037
Query 1116 TATTGTAACAAATGTGTCCGATCCAGAGCAGAGCGTAAGGAGATTGATAGATCTTAATAA 1175
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1038 TATTGTAACAAATGTGTCGGATCCAGAGCAGAGCCTAAGGAGATTGATAGATCTTAATAA 1097
Query 1176 CCCGCCTTCACTCG-AGTTTGATCAATCTAGAGGCGGAGACGTGGAGGAAGTTGAAAA 1232
|||||| |||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1098 CCCGCCGTCAC-CGGAGTTTGATGAATCTGGAGGCGGAGACGTGGAGGAAGTTGAAAA 1154
Score = 270 bits (146), Expect = 4e-71
Identities = 377/476 (79%), Gaps = 65/476 (14%)
Strand=Plus/Plus
Query 1467 AGACGAAGACGATGAGTGTGTTGAGATTGGGTTGGGGAGTTGTGAACAAGAGCCAATACA 1526
||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1359 AGAAGAAGACGATGAGTGTGTTGAGATTGGGTTGGAGAGTTGTGAACAACAGTCAATACC 1418
Query 1527 AGAGCGTTTTGGTGATGATAAAGATCCTTCTTCGGATCACGGAAACGTAGAATCTATCCG 1586
||||||||||||| ||||||||||||||||||||||||| || | ||||||| |||||
Sbjct 1419 AGAGCGTTTTGGTAATGATAAAGATCCTTCTTCGGATCAAAGAGTCCTAGAATCGATCCG 1478
Query 1587 GCTAGAAGAAGAAGACGCCGTTTTGTTTGAGCCTTGGTTGAAAAGCAGGTTGAAAAGCAG 1646
|| ||||||||| |||||||||||| ||||||| ||||||||| | | |||
Sbjct 1479 GCGAGAAGAAGACGACGCCGTTTTGATTGAGCCCTGGTTGAAA--C-G---------CAG 1526
Query 1647 GGACAGGGAACAGTCTCAACGACAAGGTTTTGGTGAATACGAAGATTGTTTCTCGGAACG 1706
||| | | ||| |||||||||||||| ||||| ||||||||| |||| ||||||
Sbjct 1527 GGA-A-----CTGTCACAACGACAAGGTTTGGGTGACGACGAAGATTCTTTCGCGGAACA 1580
Query 1707 CAGGTTCTTACAAGAAGAAGAAGAAGAGTGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1766
||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1581 CAGCTTCTTACAAGTAGAAGA-G-----TGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1634
Query 1767 TCAGATTTCATTCTTGGAATCGAACCGGCTagaagaagaatttgaagaagagaaagaagC 1826
| | | | || | | ||| | | |||||| || ||| |||| |||||
Sbjct 1635 --A--T--C------G-AA-C---C-GGC-A-A-GAAGAA---GA-GAA-AGAA-GAAGC 1667
Query 1827 AGCCCGGTTTTCAAACGACAACGATTTCGTTGAGCTTTTGTTTCAAGGTATTGAACAATC 1886
|| |||||||||||||| ||| |||| ||||||||||||| | |||||||||| |||
Sbjct 1668 --CC-GGTTTTCAAACGACGACGTTTTCCTTGAGCTTTTGTTGGATGGTATTGAACGATC 1724
Query 1887 AAAATCAAAACCAAAGCCAAAGTC-TTGTTCTT-AT-T-atgatgatgatgatgat 1938
|||| | | ||||||||| || || ||||| || | |||||||||||||||||
Sbjct 1725 AAAA--A---C-AAAGCCAAA-TCGTTCTTCTTCATCTCATGATGATGATGATGAT 1773
Score = 58.4 bits (31), Expect = 3e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1442 TAAAAGTGATAGAACCGATCGGGCTAGACGAAGA 1475
|||||||||||||||||||||||||||| |||||
Sbjct 1322 TAAAAGTGATAGAACCGATCGGGCTAGAAGAAGA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111528237360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5