BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49910.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1 1827 0.0
Ahg929856 jgi|Araly1|929856|scaffold_302313.1 1112 0.0
> Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1
Length=1205
Score = 1827 bits (989), Expect = 0.0
Identities = 1136/1207 (94%), Gaps = 10/1207 (1%)
Strand=Plus/Plus
Query 1 ATGACTTTGGTGCCGGCCATTGGTCGCGAGCTCTCGAATCCACCGTCCGATGGGATTTCT 60
|||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGACTCTGTTGCCGGCGATTGGTCGCGAGCTCTCGAATCCGCCGTCCGATGGGATTTCT 60
Query 61 AATCTTCGATTTTCTAATAACAGCGATCATTTACTAGTCTCTTCATGGGATAAGAGTGTA 120
||||| |||||||| |||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 AATCTCCGATTTTCCAATAGCAGCGATCATTTAATAGTCTCTTCATGGGACAAGAGTGTA 120
Query 121 AGATTGTATGATGCGAACGGCGATTTGATGAGAGGGGAGTTTAAACATGGTGGAGCGGTA 180
||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 AGATTGTATGATGCGAACGCCGATTTGATGAGAGGGGAGTTCAAGCATGGAGGAGCGGTA 180
Query 181 CTCGATTGCTGCTTCCATGATGATTCTTCTGGATTCAGTGTTTGCGCCGATACTAAAGTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGATTGCTGCTTCCATGATGATTCTTCTGGATTCAGTGTTTGCGCCGATACTAAAGTC 240
Query 241 AGAAGAATTGACTTCAATGCTGGCAAAGAAGACGTTTTGGGTACGCATGAGAAGCCAGTT 300
||| ||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 241 AGACGAATTGACTTCAATGCTGGCAAAGAGGACGTTTTGGGGACGCATGATAAACCAGTT 300
Query 301 CGATGTGTTGAGTATTCTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAACG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGATGTGTTGAGTATTCTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAACT 360
Query 361 ATTAAATGTTGGGATCCAAGAGGTGCAAGTGGGACT-GAGCGCACACAGATTGGAACTTA 419
||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||
Sbjct 361 ATTAAATGTTGGGATCCAAGAGGTGCAAGTGGG-CTGGAGCGTACACATATTGGTACATA 419
Query 420 T-ATGCAACCTGAGCGTGTTAACTCTCTTTCTCTTGTTGGAAATCGTTTGGTAGTGGCAA 478
| | |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 420 TCA-GCAACCTGAGCGTGTTAACTCTCTTTCTGTAGTTGGAAATCGTTTGGTGGTGGCAA 478
Query 479 CAGCAGGAAGGCATGTCAACATTTATGATCTTAGAAATATGTCCCAGCCTGAGCAAAGAA 538
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 479 CAGCAGGAAGGCATGTCAACATTTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAA 538
Query 539 GAGAGTCCTCACTTAAATACCAGACAAGATGTGTACGTTGTTATCCCAACGGAACAGGAT 598
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 539 GAGAGTCCTCACTTAAATACCAGACAAGATGTGTGCGTTGTTATCCCAATGGAACAGGAT 598
Query 599 ATGCCCTTAGCTCTGTTGAAGGGAGGGTTTCAATGGAGTTTTTTGATCTATCAGAAGCTG 658
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 599 ATGCCCTTAGCTCTGTTGAAGGGAGGGTGTCAATGGAGTTCTTTGATCGATCAGAAGCTG 658
Query 659 CTCAGGCTAAAAAATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTG 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAAGCTAAAAAATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTG 718
Query 719 TCTACCCTGTAAATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGCT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TCTACCCTGTAAATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGTT 778
Query 779 GTGATGGTTTTGTCAACATTTGGGACGGTAACAATAAGAAGAGGCTTTATCAGTACTCTA 838
|||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 779 GTGATGGTTTCGTCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCTA 838
Query 839 AGTATCCAACAAGTATTGCGGCGCTGTCATTCAGCCGAGATGGTGGATTACTGGCTGTTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTATCCAACAAGTATTGCGGCGCTGTCATTCAGCCGAGATGGTGGATTACTGGCTGTTG 898
Query 899 CTTCTAGTTACACGTTTGAAGAGGGAGACAAACCGCATGAACCGGACGCCATCTTTGTTA 958
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTCTAGTTACACGTTTGAAGAGGGAGACAAACCGCATGAACCAGACGCCATCTTTGTTC 958
Query 959 GAAGTGTTAATGAAATTGAAGTGAAACCGAAACCCAAAGTATACCCAAATCCCCCGGTAT 1018
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| |||
Sbjct 959 GAAGTGTTAATGAAATCGAAGTGAAACCAAAACCCAAAGTATACCCCAATCCTCCGATAT 1018
Query 1019 AGTCAAG--A--AATAATGGAATGAGCAGAGTCAAATTCGACTTGTGTGTTGT-T-GTAT 1072
|| | || | |||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1019 AGACTAGTCAGTAATAATGGAATGAGCAGAGTTAAATTCGACTTGTGTGTTGTATTGTAT 1078
Query 1073 TGTAGCACTTGAAAGTGAGTTATAAAATCTTATTTTGGCTGTAAAGTGAAATGTGAACGT 1132
||||| |||| |||||||||| |||||||||||| ||||||||||||||| ||||||| |
Sbjct 1079 TGTAGGACTTTAAAGTGAGTTTTAAAATCTTATTGTGGCTGTAAAGTGAATTGTGAACAT 1138
Query 1133 TATAATGGCTTTCGAATCTGAGATGGTGTTCCATTTACTCTCTGGGTTGCCTCCAATTTT 1192
|| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1139 TACAAAGGCTTTCGAATCTGAGATTGTGTTCCATTTACTCTCTGGTTTGCCTCCAATTTT 1198
Query 1193 TCTTTTA 1199
| |||||
Sbjct 1199 TTTTTTA 1205
> Ahg929856 jgi|Araly1|929856|scaffold_302313.1
Length=1065
Score = 1112 bits (602), Expect = 0.0
Identities = 869/998 (87%), Gaps = 18/998 (2%)
Strand=Plus/Plus
Query 22 GGTCGCGAGCTCTCGAATCCACCGTCCGATGGGATTTCTAATCTTCGATTTTCTAATAAC 81
||||| |||||||||||||| |||||||| || |||| ||||| |||||||| ||||||
Sbjct 44 GGTCGTGAGCTCTCGAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCAATAAC 103
Query 82 AGCGATCATTTACTAGTCTCTTCATGGGATAAGAGTGTAAGATTGTATGATGCGAACGGC 141
|| |||||| | || || ||||||||||||||| |||| ||||||||||||| || | |
Sbjct 104 AGTGATCATCTCCTCGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACC 163
Query 142 GATTTGATGAGAGGGGAGTT-TAAACATGGTGGAGCGGTACTCGATTGCTGCTTCCATGA 200
||| | ||| ||||||||| | |||||| ||||| || ||||||||||| || || ||
Sbjct 164 AATTCGTTGAAAGGGGAGTTCT-TACATGGCGGAGCAGTGCTCGATTGCTGTTTTCACGA 222
Query 201 TGA-TTCTTCTGGATTCAGTGTTTGCGCCGA-TACTAAAGTTAGAAGAATTG-ACTTCAA 257
||| ||| || || ||||||||| ||||||| ||| ||||| ||||| |||| | |||||
Sbjct 223 TGATTTC-TCCGGCTTCAGTGTTGGCGCCGATTAC-AAAGTCAGAAGGATTGTA-TTCAA 279
Query 258 TGCT-GGCAAAGAAGACGTTTTGGGTACGCATGAGAAGCCAGTTCGATGTGTTGAGTATT 316
|| | |||||||| ||| ||||||| || ||||| || ||||| ||||||||||||||||
Sbjct 280 TG-TCGGCAAAGAGGACATTTTGGGGACACATGACAAACCAGTGCGATGTGTTGAGTATT 338
Query 317 CTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAAC-GATTAAATGTTGGGAT 375
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 339 CTTATGCTGCAGGGCAAGTGATCACTGGATCTTGGGATAAAACAG-TTAAATGTTGGGAT 397
Query 376 CCAAGAGGTGCAAGTGGGACTGAGCGCACACAGATTGGAACTTATATGCAACCTGAGCGT 435
|||||||| ||||||||| |||| ||||| ||| | ||||| ||| |||| || ||||||
Sbjct 398 CCAAGAGGCGCAAGTGGGCCTGAACGCACCCAGGTGGGAACATATTTGCAGCCAGAGCGT 457
Query 436 GTTAACTCTCTTTCTCTTGTTGGAAATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTC 495
||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 458 GTTTACTCTATGTCTCTTGTTGGACATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTA 517
Query 496 AACATTTATGATCTTAGAAATATGTCCCAGCCTGAGCAAAGAAGAGAGTCCTCACTTAAA 555
||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 518 AACATCTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGAGAGTCTTCACTGAAA 577
Query 556 TACCAGACAAGATGTGTACGTTGTTATCCCAACGGAACAGGATATGCCCTTAGCTCTGTT 615
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 578 TACCAGACGAGATGTGTGCGTTGTTATCCTAATGGAACAGGATATGCTCTTAGCTCTGTT 637
Query 616 GAAGGGAGGGTTTCAATGGAGTTTTTTGATCTATCAGAAGCTGCTCAGGCTAAAAAATAT 675
||||| |||||| | ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 638 GAAGGAAGGGTTGCTATGGAGTTTTTTGATCTGTCAGAAGCTGCTCAAGCTAAAAAATAT 697
Query 676 GCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTGTCTACCCTGTAAATGCA 735
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 698 GCTTTCAAATGTCATCGGAAATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCC 757
Query 736 ATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGCTGTGATGGTTTTGTCAAC 795
||||| |||||||| || |||||||| ||||| | ||||| ||||||||||| ||||||
Sbjct 758 ATTGCCTTCCATCCAATCTATGGCACCTTTGCAACTGGAGGTTGTGATGGTTTCGTCAAC 817
Query 796 ATTTGGGACGGTAACAATAAGAAGAGGCTT-TATCAGTACTCTAAGTATCCAACAAGTAT 854
|||||||| |||||||| ||||||||| || |||||||| || |||||||||||||||||
Sbjct 818 ATTTGGGATGGTAACAACAAGAAGAGG-TTATATCAGTATTCAAAGTATCCAACAAGTAT 876
Query 855 -TGCGGCGCTGTCATTCAGCCGAGATGGTG-GATTACTGGCTGTTGCTTCTAGTTACACG 912
| |||| ||||| ||||| ||||||||| | | ||||||||||||||| |||||||||
Sbjct 877 CT-CGGCACTGTCGTTCAGTCGAGATGGTCAGCT-ACTGGCTGTTGCTTCAAGTTACACG 934
Query 913 TTTGAAGAGGGAGACAAACCGCATGAACCGGACGCCATCTTTGTTAGAAGTGTTAATGAA 972
||||||||||| || ||| |||| ||||| || ||||||||||| ||||| || || |||
Sbjct 935 TTTGAAGAGGGGGAGAAATCGCAAGAACCAGAGGCCATCTTTGTAAGAAGCGTGAACGAA 994
Query 973 ATTGAAGTGAAACCGAAACCCAAAGTATACCCAAATCC 1010
|| ||||||||||| ||||||||||||||||| |||||
Sbjct 995 ATCGAAGTGAAACCAAAACCCAAAGTATACCCGAATCC 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5