BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49940.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919164 jgi|Araly1|919164|scaffold_100445.1 239 3e-62
Ahg925011 jgi|Araly1|925011|scaffold_200572.1 159 3e-38
Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149 152 4e-36
Ahg894152 jgi|Araly1|894152|Al_scaffold_0006_2148 113 2e-24
> Ahg919164 jgi|Araly1|919164|scaffold_100445.1
Length=958
Score = 239 bits (129), Expect = 3e-62
Identities = 182/206 (88%), Gaps = 10/206 (5%)
Strand=Plus/Plus
Query 64 AGACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTCTATAAG----GTGGAAGA 119
||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 306 AGACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAATGTGGGAGA 365
Query 120 ACTA-AAGAGCAAGTTGAGCT-CTTAAAGCTAAA-CTTTGGATGATATATCAAGAAGAAG 176
| || |||||||||||||| | || || || ||| ||||||||||||||||||| |||||
Sbjct 366 A-TAGAAGAGCAAGTTGAGTTACTGAA-GCAAAAGCTTTGGATGATATATCAAGGAGAAG 423
Query 177 CATTCAATGGAAAACCAGCAAAGATTGCGAGATCTCATGGCC-GAAATTTCAGGTCACGG 235
|||||||||| |||||| |||||| |||||| ||||||||| ||| |||||||||||||
Sbjct 424 CATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGGTCACGG 483
Query 236 TCGAGAAGGAAACCTCTAGGATATTG 261
|||||||||||||||||||||| |||
Sbjct 484 TCGAGAAGGAAACCTCTAGGATCTTG 509
Score = 69.4 bits (37), Expect = 5e-11
Identities = 47/51 (92%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 264 GTGTATCGGAAA-CTCAAG-TGATAGAGCCAGATGCAAACAAGGCTTGTAA 312
||||| |||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 564 GTGTACCGGAAAGCTC-AGTTGATAGAGCCAGATGCAAACAAGGCTTGTAA 613
> Ahg925011 jgi|Araly1|925011|scaffold_200572.1
Length=417
Score = 159 bits (86), Expect = 3e-38
Identities = 130/151 (86%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 112 GTGGAAGAACTAAAGAGCAAGTTGAGCTCTTAAAGCTAAACTTTGGATGATATATCAAGA 171
|||||| || |||||||||||| |||| || |||| ||| ||||||| ||||||| |
Sbjct 26 GTGGAACTACAAAAGAGCAAGTTTAGCTATTGAAGC-AAATTTTGGAT--TATATCAGGG 82
Query 172 AGAAGCATTCAATGGAAAACCAGCAAAGATTGCGAGATCTCATGGCCG-AAATTTCAGGT 230
|||||||||||||||||||||| |||| | | ||||||||||||| | |||||||||||
Sbjct 83 AGAAGCATTCAATGGAAAACCAACAAACACTACGAGATCTCATGGAAGGAAATTTCAGGT 142
Query 231 CACGGTCGAGAAGGAAACCTCTAGGATATTG 261
|||||||||||||||||| |||||||| |||
Sbjct 143 CACGGTCGAGAAGGAAACATCTAGGATCTTG 173
> Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149
Length=672
Score = 152 bits (82), Expect = 4e-36
Identities = 91/95 (96%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 506 GATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTGAGACGATGGACCAC 565
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 422 GATTCAAGTATATTCAGAACCAGAGTCTTCTTGAAGTGGATGAGTCAGACGATGAACCAC 481
Query 566 TTTGACACAAAACAAGATCAGCTCTTTGAACAAGA 600
||||||||||||||||||||||||||||||||||
Sbjct 482 -TTGACACAAAACAAGATCAGCTCTTTGAACAAGA 515
> Ahg894152 jgi|Araly1|894152|Al_scaffold_0006_2148
Length=255
Score = 113 bits (61), Expect = 2e-24
Identities = 68/71 (96%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 631 CAACAAATACTGTGAGATCTCATGGCAAGAAATTTCAGGTCACGGTCGAGAAGAAA-CCA 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 32 CAACAAATACTGCGAGATCTCATGGCAAGAAATTTCAGGTCACGGTCGAGAAGAAAACCA 91
Query 690 CTAGGATCTTG 700
||||||| |||
Sbjct 92 CTAGGATATTG 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5