BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49950.3
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474123 jgi|Araly1|474123|fgenesh2_kg.1__4077__AT1G49950.2 1808 0.0
> Ahg474123 jgi|Araly1|474123|fgenesh2_kg.1__4077__AT1G49950.2
Length=1349
Score = 1808 bits (979), Expect = 0.0
Identities = 1184/1275 (93%), Gaps = 45/1275 (4%)
Strand=Plus/Plus
Query 263 TGC-GAACGGACTTGCTTTGACACAGCAGACCGTAAATCGGGATGGGTGCTCCTAAGCAG 321
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 108 TGCAGAACGGACTTGCTTTGACACAGCAGACCGTAAATCGGGATGGGTGCTCCAAAGCAG 167
Query 322 AAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGAGTTATAAAGCATGGACCTGGT 381
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 168 AAATGGACTCAAGAAGAAGAATCAGCTTTAAAGTCTGGCGTTATAAAGCATGGACCTGGT 227
Query 382 AAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAAT 441
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 228 AAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGGAGTCTTATACCTGCGTTCCAAT 287
Query 442 GTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGC 501
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 288 GTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCGAATGGGTGGGGATCGCGC 347
Query 502 GAAAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCA 561
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 348 GAAAAGTCTAGGTTAGCTGTTAAAAGGACACTCTCCCTTCCTAAACAGGAAGAGAACTCA 407
Query 562 CTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAAT-GTGGATGCGACCTCTGGACT 620
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 408 CTAGCCCTAACCAATTCTTTGCAAAGTGATGAAG-AAATGGTGGATGCGACCTCTGGACT 466
Query 621 CCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAAT 680
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GCAAGTTTCTTCTAATCCTGCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAAT 526
Query 681 GGAAGCAATAGCTACCCTGAAAGAACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTA 740
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 527 GGAAGCAATAGCTACCCTGAAAGAGCCTGGTGGCTGTAATAAAACAACAATTGGTGCCTA 586
Query 741 CATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAA 800
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 587 CATTGAGGATCAATATCATGCTCCAATGGACTTCAAACGGTTGTTGTCTACCAAGCTAAA 646
Query 801 GTACTTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTC 860
|||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 647 GTACTTGACAGCTTGCGGCAAACTTGTGAAGGTTAAGCGTAAGTATAGAATTCCAAACTC 706
Query 861 CACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTTGGAGGAAAACAGAGGAC 920
|||||| || ||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 707 CACTCCGTTATCTTCCCACAGGAAAAAAGGTCTGGGGGCGTTTGCAGGAAGACAGAGGAC 766
Query 921 TTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACA 980
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 767 TTCTTCATTGCCTTCACCTAAAACAGACAGAGATGAAGTGAATTTTCAGACAAGGTCACA 826
Query 981 GATTGATACAGAGATAGCCAGAATGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGC 1040
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GATGGATACAGAGTTAGCCAGAATGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGC 886
Query 1041 AGCACAGGCAGTAGCAGAGGCAGAAGCTGC-CATGGCAGAGGCTGAGGAAGCTGCAAAGG 1099
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 887 AGCACAGGCAGTAGCAGAGGCAGAAGCT-CTCATGGCAGAGGCTGAGGAAGCTGCAAAGG 945
Query 1100 AAGCGGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAA 1159
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 946 AAGCAGAGGCAGCAGAAGCCGAAGCCGAAGCAGCTCAAGCTTTCGCTGAAGAAGCTTCAA 1005
Query 1160 AGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCCTGAGGTAATGGAAAGC 1219
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1006 AGACACTGAAAGGAAGAAACAACTGCAAAATGATGATCCGTGCCTGAGGTGATGGAAAGC 1065
Query 1220 gagagaagaaggagactaaatgtgaagagagagtagagagaagCCTAGTGTTTGTGTTGA 1279
||||||||||| | |||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1066 GAGAGAAGAAGAA-ACTAAAAGTGAAGAGAGAGTAAAGAGTTGCCTAGTGTTTGTGTTG- 1123
Query 1280 TCATTCTCTTTACTTGGGAAGTTGTTTTTTAGTAGTAAGCAATCAAATATGTTTGTCAGT 1339
| || | || | | | |||| | ||||||||||||||||||||||
Sbjct 1124 T--TT-T-TT-A---G-----T--------AGTA--A-GCAATCAAATATGTTTGTCAGT 1159
Query 1340 ATGTCGTCGCTCTGACTCTTTTGATTCCTGCACAACTTTTGGGAAAAAAT--GTTTTATT 1397
|||||| | || |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1160 ATGTCG-C-CT--GACTCTTTTGATTCCTGCACAACTTT-GGGAAAAAAAAAGTTTTATT 1214
Query 1398 TGGCTCTTCTCACTCTCCAATATACATACAACTATCGTTAGTAA--TGTGTATAATTTAT 1455
|| |||||||| ||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1215 TG-CTCTTCTCGCTCTCCAATATAC---CA-CTATCGTTAGTAAAATGTGTATAATTTAT 1269
Query 1456 AGACCGATCTATCTATGCACTATCATGCTTATCGCCAATGAGCATTTTGATTATGTATGT 1515
| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1270 ACATCGATCTATCTATGCACTATCATGCTTATCGCCAATGAGCATTTTAATTATGTATGT 1329
Query 1516 ATTATCAATTAATAG 1530
|||||||||||||||
Sbjct 1330 ATTATCAATTAATAG 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5