BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49960.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474126 jgi|Araly1|474126|fgenesh2_kg.1__4080__AT1G49960.1 2785 0.0
> Ahg474126 jgi|Araly1|474126|fgenesh2_kg.1__4080__AT1G49960.1
Length=1781
Score = 2785 bits (1508), Expect = 0.0
Identities = 1696/1785 (95%), Gaps = 20/1785 (1%)
Strand=Plus/Plus
Query 61 TATGGCAACAAAGACCGATGATTTTGCACCATTTCCAGTTAAAGATCAGCTTCCCGGAGT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATGGCGACAAAGACCGATGATTTTGCACCATTTCCAGTTAAAGATCAGCTTCCCGGAGT 60
Query 121 CGAATTTTGTGTCTCGAGCTCTCCAAATTGGCCGGAAGGAATAGTTCTTGGGTTTCAACA 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CGAATTTTGTGTCTCGAGCTCTCCAAATTGGCCGGAAGGCATAGTTCTTGGGTTTCAACA 120
Query 181 TTACATTGTAATGCTTGGAACTACTGTAATCATACCTTCCATACTCGTCCCTCTAATGGG 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TTACATTGTAATGCTTGGAACTACTGTTATCATACCTTCCATACTCGTCCCTCTAATGGG 180
Query 241 TGGTGGCGACGTGGAGAAAGCGGAAGTCATAAACACAGTATTGTTCGTGTCAGGAATAAA 300
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 181 TGGTGGCGACGTGGAGAAAGCGGAAGTCATAAACACAGTGTTGTTCGTGTCGGGAATAAA 240
Query 301 CACGTTGTTGCAGAGTTTGTTCGGAAGTCGACTTCCTGTGGTCATGGGAGCTTCTTATGC 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CACGTTGTTGCAGAGTTTGTTCGGAAGTCGACTTCCTGTCGTCATGGGAGCTTCTTATGC 300
Query 361 TTACCTCATCCCTGCTCTTTACATCACTTTCTCTTATCGATTCACTTACTATCTCCATCC 420
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TTACGTCATCCCTGCTCTTTACATCACTTTCTCTTATCGCTTCACTTACTATCTCCATCC 360
Query 421 TCATCTCAGATTTGAAGAGACTATGAGAGCTATTCAAGGAGCTCTTATCATTGCTTCAAT 480
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TCATTTGAGATTTGAAGAGACTATGAGAGCTATTCAAGGAGCTCTTATCATTGCTTCTAT 420
Query 481 AAGTCATATGATAATGGGTTTCTTCGGTTTGTGGAGAATCTTGGTCAGGTTTCTTTCTCC 540
|| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 421 AATTCATATGATAACGGGTTTCTTCGGTTTGTGGAGGATCTTGGTCAGGTTTCTTACTCC 480
Query 541 TCTTTCGGCTGCTCCTCTTGTGATTCTCACCGGC-GTTGGCCTCCTCGCCTTTGCGTTTC 599
|||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 481 TCTTTCGGCTGCTCCTCTCGTGATTCTCACCG-CTGTTGGCCTCGTCGCCTTAGCGTTTC 539
Query 600 CTCAGCTTGCGAGATGTATAGAAATTGGACTCCCAGCATTGATCATACTGATAATTTTAT 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 CTCAGCTTGCGAGATGTATAGAAATTGGACTCCCAGCGTTGATCATACTGATAATTTTAT 599
Query 660 CTCAGTATCTTCCTCACTTGTTTAAGTGTAAGAGATCAATATGCGAGCAATTCGCTGTTC 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 CTCAGTATCTTCCTCACTTGTTTAAGTGTAAGAGATCTATATGCGAGCAATTCGCTGTTC 659
Query 720 TGTTCACAATAGCGATCGTCTGGGCTTACGCAGAGATTCTGACAGCAGCTGGAGCTTATG 779
||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |
Sbjct 660 TGTTCACAATAGCTATCGTGTGGGCATACGCAGAGATTCTGACGGCAGCTGGAGCTTACG 719
Query 780 ACAAAAGACCGGACAATACACAGCTCAGTTGTCGAACAGACCGGTCTGGTCTCATTAGTG 839
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACAAAAGACCGGATAGTACACAGCTCAGTTGTCGAACAGACCGGTCTGGTCTCATTAGTG 779
Query 840 CTTCTCCATGGGTGAGAATTCCATATCCATTGCAATGGGGACGTCCAAGTTTCCATGGAA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 780 CTTCTCCATGGGTGAGAATTCCATATCCATTGCAATGGGGACGTCCAAGTTTTCATGCAA 839
Query 900 GTGATGCATTCGCAATGATGGCAGCTACTTACGTGGCGATTGTCGAGACGACAGGTTCCT 959
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 840 GTGATGCATTCGCAATGATGGCAGCTACGTATGTGGCGATTGTAGAGACGACAGGTTCCT 899
Query 960 TCATCGCGGCTTCAAGATTTGGCAGTGCAACTCATATCCCTCCCTCGGTGCTTAGCCGTG 1019
||||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 900 TCATCGCCGCTTCAAGATTTGGTAGCGCAACTCATATCCCTCCCTCAGTGCTTAGTCGTG 959
Query 1020 GCATTGGATGGCAGGGCATAGGCGTTTTGCTGAATGGACTGTTTGGAACAGCAACTGGTT 1079
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 960 GCATTGGATGGCAGGGCATAGGCGTTTTGCTGGGTGGACTCTTTGGAACAGCAACTGGTT 1019
Query 1080 CCACAGCTTTGGTAGAAAATACAGGGCTTCTAGGATTAACGAAGGTTGGGAGCAGAAGAG 1139
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCACAGCTTTGGTTGAAAATACAGGGCTTCTAGGATTAACGAAGGTTGGGAGCAGAAGAG 1079
Query 1140 TGGTTCAGATATCTGCAGGTTTCATGATCTTCTTCTCCATTTTCGGGAAGTTTGGGGCTG 1199
|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 TGGTCCAGATAGCTGCAGGTTTCATGATCTTCTTCTCCATTTTTGGGAAGTTTGGGGCTG 1139
Query 1200 TTCTTGCATCAATACCTTTACCAATCTTTGCAGCTCTGTACTGTGTTCTATTCGCCTATG 1259
|||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCTTGCATCGATACCACTACCGATATTTGCAGCTCTGTACTGTGTTCTATTCGCCTATG 1199
Query 1260 TTGCTTCTGCGGGACTTGGCCTTCTTCAGTTCTGCAACTTAAACAGCTTTAGGAA-TAAA 1318
|||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||
Sbjct 1200 TTGCTTCTGCGGGACTTGGCCTTCTTCAATTCTGCAACATAAACAGCTTTAG-AACTAAA 1258
Query 1319 TTTATCCTCGGCTTCTCCATCTTCATTGGACTCTCTGTGGCGCAATACTTCACCGAATAT 1378
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1259 TTTATCCTCGGCTTCTCCATCTTCATCGGTCTCTCTGTGGCGCAATACTTCACCGAATAT 1318
Query 1379 CTATTCATCTCTGGTCGTGGACCTGTCCACACTCGCACTTCTGCTTTCAACGTGATAATG 1438
|||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 1319 CTATTCATCTCTGGTCGTGGACCTGTTCATACTCGTACTTCTGCTTTCAATGTGATAATG 1378
Query 1439 CAAGTGATATTCTCTTCCGCTGCAACGGTTGG-GATAATGGCAGCGTTCTTGTTGGACTG 1497
||||||||||||||||| || ||||| ||||| | |||||||||||||||||||||||||
Sbjct 1379 CAAGTGATATTCTCTTCGGCGGCAACAGTTGGAG-TAATGGCAGCGTTCTTGTTGGACTG 1437
Query 1498 TACTCATAGCTATGGACATGCCTCGGTGAGGAGAGACAGCGGAAGACATTGGTGGGAGAA 1557
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1438 TACTCATAGCTATGGACATGCCTCAGTGAGGAGAGACAGTGGAAGACATTGGTGGGAGAA 1497
Query 1558 ATTCAGAGTCTACCACACTGATACTCGAACAGAAGAATTTTACGCATTGCCTTACAACCT 1617
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1498 ATTCAGAGTCTACCACACTGATACTCGAACAGAAGAGTTTTACGCATTGCCTTACAACCT 1557
Query 1618 CAACCGATTCTTCCCTTC------A---TTCTGAAAATCCCGAAAACCCAAAACTCGGTT 1668
|||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 1558 CAACCGATTCTTCCCTTCTTTCTGAAAATTCTGAAAATCCCGAAAACCCAAAACTAGGTT 1617
Query 1669 TTTTCAGAGTGTGAGAAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCC 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTTTCAGAGTGTGAGAAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCC 1677
Query 1729 ACCTAGATAACTTTTGATGTTATTT----CCCTTTTTGCCAACACTTTTTTGTATGTTAC 1784
|||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 1678 GCCTAGAGAACTTTTGATGTTTTTTTTTTCCCTTTTTGCCAACACTTTTT-GTATGTTAC 1736
Query 1785 TACCACATGTGTTTGCTTATAGATTGTAAGAGCTACATATTCCAG 1829
||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1737 TACAACATGTGTTTGCTTATAGATTGTAAAAGCTACATATTCCAG 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5