BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49975.1

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314408 jgi|Araly1|314408|fgenesh1_pm.C_scaffold_1003188           638    0.0  


> Ahg314408 jgi|Araly1|314408|fgenesh1_pm.C_scaffold_1003188
Length=390

 Score =  638 bits (345),  Expect = 0.0
 Identities = 375/390 (96%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  44   ATGAGCTCCATAAGCCAAAGCATTCTCATGGCTTTAACAGTAACTGTTAACAAATATGCT  103
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGTTCCATAAGCCAAAGCATTCTCATGGCTTTAACAGTAACTGTTAACAAATATGCT  60

Query  104  TCTTCCAATGTTCAAGCTGTACGCAGAAACGATACCAAACGCCATTCTTTAACTGCTCCA  163
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  61   TCTTCCAATGTTCAAGCTGTACGCAGAAACGATACCAAACGCGATTCTTTAACCGCTCCA  120

Query  164  CCCGCTGATTTAGGACGCAGAAACATTCTCTTCTCCTCCACGTCTTTCATCGCCGCTGCT  223
              |||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||
Sbjct  121  GTCGCTGATTTAGGACGCAGAAACATCCTCTTCTCCTCAACGTCGTTCATCGCCACTGCT  180

Query  224  TTGACCAGCAGCGACCAGCTTCTCCAAAAGTATTTGAAGAAGACTGAGGAAAACAAAGCC  283
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  TTGACCAGCAGCGATCAGCTTCTCCAGAAGTATTTGAAGAAGACTGAGGAAAACAAAGCC  240

Query  284  AAGAATGATAAGGAGAGATTGGACAGTTTTTACAAGAGGAATTATAAAGACTACTTTGAG  343
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGAATGATAAAGAGAGATTGGACAGTTTTTACAAGAGGAATTATAAAGACTACTTTGAG  300

Query  344  TTTGTTGAAGGATCTATAAAGGGAAAGACAGAAGCAGAGCTCAGTGAATCTGAAAAACGG  403
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  301  TTTGTTGAAGGATCTATAAAAGGAAAGACAGAAGCAGAGCTCAGTGAATCTGAAAAAAGG  360

Query  404  ATTCTGGAATGGCTCAAAGCCAACAAatga  433
            ||||| ||||||||||||||||||||||||
Sbjct  361  ATTCTTGAATGGCTCAAAGCCAACAAATGA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21939463675


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5