BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49980.1
Length=2734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914105 jgi|Araly1|914105|Al_scaffold_0001_4359 2547 0.0
Ahg356151 jgi|Araly1|356151|fgenesh1_pg.C_scaffold_7003324 1413 0.0
Ahg914106 jgi|Araly1|914106|Al_scaffold_0001_4360 815 0.0
> Ahg914105 jgi|Araly1|914105|Al_scaffold_0001_4359
Length=1911
Score = 2547 bits (1379), Expect = 0.0
Identities = 1531/1603 (96%), Gaps = 15/1603 (1%)
Strand=Plus/Plus
Query 56 ATGGATAATGGCGAATCATCATCCACCAACAATTCGTCGCGTCCATGGGAATCCTACAAT 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAATGGCGAATCATCATCCACCAACAATTCGTCGCGTCCATGGGAATCCTACAAC 60
Query 116 ACCGTCTTCACTAACGCGAAAGCCGGTATGGAGGGAGTTGACAAAGAGAAAGTCCAGAGG 175
||| ||||||| ||||| |||||||| |||||||||||||| || || ||||||||||||
Sbjct 61 ACCTTCTTCACGAACGCCAAAGCCGGAATGGAGGGAGTTGATAAGGAAAAAGTCCAGAGG 120
Query 176 GTTGTCTATGAAATGAGTAAAGGATCCAAGTATTTTCAAAATGAGGAGCGTAAAGAAGCT 235
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 121 ATTGTCTATGAAATGAGTAAAGGATCCAAGTTTTTTCAAAATGAGGAACGTAAAGAAGCT 180
Query 236 CTTATGAAACAAAAGATTGAGCATATGCGTGATCGATGCGCAAAGCTTTCATCCCT-TGA 294
||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| | |
Sbjct 181 CTTATGAAACAAAAGATTGAGCATATGCGTGATAGATGCGCAAAGCTTTCGT-CCTCTAA 239
Query 295 TTTATCTAATTATCAGAAGGTGGTTGATAAAAGGATCTTAGAGTTAGAAGCTACACGTGA 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTATCTAATTATCACAAGGTGGTTGATAAAAGGATCTTAGAGTTAGAAGCTACACGTGA 299
Query 355 CCTATCCAGAATTTGGCTTCATGTTGATATGGATGCTTTTTATGCTGCTGTTGAAACTTT 414
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTATCCAGAATTTGGCTGCATGTTGATATGGATGCTTTTTATGCTGCTGTTGAAACTTT 359
Query 415 GAGCGATCCTTCGATCAAGGGCAAGCCAATGGCTGTTGGAGGCTTATCCATGATCTCCAC 474
|||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 360 GAGCGATCCTTCTCTCAAGGGCAAGCCGATGGCTGTTGGAGGATTGTCCATGATCTCCAC 419
Query 475 TGCTAATTATGAGGCAAGGAAGTTTGGGGTCCGTGCTGCAATGCCTGGCTTCATTGCTCG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTAATTATGAGGCAAGGAAGTTTGGGGTCCGTGCTGCAATGCCTGGCTTCATTGCTCG 479
Query 535 TAAATTGTGTCCAGATTTGATATTTGTTCCTGTTGATTTCACTAAGTATACTCACTACAG 594
|||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TAAACTATGTCCAGATTTGATATTTGTTCCTGTAGATTTCACTAAGTATACTCACTACAG 539
Query 595 TGACTTAACCAGAAAGGTTTTTAGGAACTATGATCCTCACTTCATTGCTGGGAGCTTGGA 654
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGACTTAACAAGAAAGGTTTTTAGGAACTATGATCCTCACTTCATTGCTGGGAGCTTGGA 599
Query 655 TGAAGCCTACCTTGACATAACTGAGGTTTGTCGAGAAAGAGGTCTTTCAGGTGGAGAAAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAAGCCTACCTTGACATAACTGAGGTTTGTCGAGAAAGAGGTCTTTCAGGTGGAGAAAT 659
Query 715 TGCAGAGGAGCTTAGATCTTCTGTTTATTCCGAGACTGGACTGACATGCAGTGCTGGAGT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCAGAGGAGCTTAGATCTTCTGTTTATTCCGAGACTGGACTGACATGCAGTGCTGGAGT 719
Query 775 AGCGGCAAACCGCTTGCTAGCCAAGGTTTGCTCAGACATTAACAAGCCTAATGGACAGTT 834
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCGGCAAACCGCTTACTAGCCAAGGTTTGCTCAGACATTAACAAGCCTAATGGACAGTT 779
Query 835 TGTTCTACAAAATGACCGATCAACTGTCATGACATTCGTATCTTTCCTCCCTGTAAGAAA 894
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 780 TGTTCTACAAAATGACCGATCAACTGTCATGACATTTGTATCTTCCCTCCCTGTAAGAAA 839
Query 895 GATCGGTGGAATTGGTAAGGTTACTGAACATATTTTAAAGGATGCTTTGGGAATTAAAAC 954
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 840 GATCGGTGGAATTGGTAAGGTTACTGAACATATTCTAAAAGATGCTTTGGGAATTAAAAC 899
Query 955 ATGTGAGGAGATGGTGCAGAAGGGAtctcttctctacgctctcttctctcAGTCATCAGC 1014
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 ATGCGAGGAGATGGTGCAGAAGGGATCTCTTCTCTACGCTCTCTTCTCTCAGTCGTCAGC 959
Query 1015 AGACttttttttGTCGGTTGGACTGGGGCTTGGAGGAACAAACACCCCTCAGGTTAGGTC 1074
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 AGACTTTTTTTTGTCGGTTGGACTGGGGCTTGGAGGAACAGACACCCCTCAGGTTAGGTC 1019
Query 1075 TCGTAAAAGTATTAGCAGTGAGAGGACATTTGCTGCGACAGGAGATGAAAGATTGCTATA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCGTAAAAGTATTAGCAGTGAGAGGACATTTGCTGCGACAGGAGATGAAAGATTGCTATA 1079
Query 1135 TTCCAAGTTGGATGAACTTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGCCTAAC 1194
||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 TTCGAAGTTGGCTGAAATTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGTCTAAC 1139
Query 1195 AGCAAGAACGTTGACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGT 1254
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCAAGGACGTTGACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGT 1199
Query 1255 TAGCCTGCAGAGGTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TAGCCTGCAGAGGTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTT 1259
Query 1315 GAAGGCAGAACTTCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGA 1374
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAAGGCGGAACTTCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGG 1319
Query 1375 AGAAATCCGCAATTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAAATCCGCAATTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGA 1379
Query 1435 TTCCTCAAGACAAGCACAAGATCTGGATGACAATGACTCATTTGACTTGGATGCTAATAA 1494
||| |||||||||| | ||||||||| ||||||||||||||||| ||||||| |||
Sbjct 1380 TTCTTCAAGACAAG-A-----TCTGGATGATAATGACTCATTTGACTTAGATGCTAGTAA 1433
Query 1495 AAATTGCTTAAGCAATGACGAGAGCGGGAATGTATCCTTTGGTTCTCATGAGACAAGCTC 1554
|||||||||||| ||||||| ||| | ||||||||||||| |||||||||||||
Sbjct 1434 AAATTGCTTAAGTAATGACGTGAGT-----T-TATCCTTTGGTTCCCATGAGACAAGCTA 1487
Query 1555 TGCCCATCTGAAGGATGTTGTCGAATATGAAGAACGGTCCCAAATAGATTCCGGAAAGGT 1614
||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||
Sbjct 1488 TGCCCATCTGAAGGATGTTGTTGAATATGAAGAACGATCACAAATAGATTCTGAAAAGGT 1547
Query 1615 AATTCCAAATCAAGAGTGTATGAAAAAAGAAGAAAGGCTGCAA 1657
||||||||||||||| ||| ||||||| |||||||||| ||||
Sbjct 1548 AATTCCAAATCAAGAATGTGTGAAAAA-GAAGAAAGGCCGCAA 1589
Score = 468 bits (253), Expect = 1e-130
Identities = 303/326 (93%), Gaps = 7/326 (2%)
Strand=Plus/Plus
Query 1749 CAGTTTCAGTATTTCCACAAACGGAGCCGTTATATTGGATTGACGGCTACAAATGCGTCT 1808
|||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 1590 CAGTTTCAGTATTTCCGCAAACGG-GCCATTATATTGGGTTGATGGCTACAAATGCGTCT 1648
Query 1809 TGTGTGGGATAGAGTTACCACCATCTTTTGTAGAGGAACGACAAGAACAC-TC-TGATTT 1866
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1649 TGTGTGGGATAGAGTTACCACCATCTTTTGTTGAGGAACGACAAGAACACCTCCTGATTT 1708
Query 1867 TCATCTCGCTCAGAGACTTCAAAACGAAGAAACTGGCTCTAGTTCTTCCACAACACCTTC 1926
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1709 TCATCTTGCTCAGAGACTTCAAAACGAAGAATCTGGATCTAGTTCTTCCACAACACCTTC 1768
Query 1927 AAAACGAAGGATTCT-CGGAAAGGAAAAGGTAAATTCGAAGCCAAAGAAGCAGAAACCAG 1985
|||||||||| | | | || || ||||||||||||| |||| |||||||||||||||||
Sbjct 1769 AAAACGAAGG-T-CAGCTGACAG-AAAAGGTAAATTCCAAGCGAAAGAAGCAGAAACCAG 1825
Query 1986 ATCAAAAGGACAGTAGCAAACACATCCCAATACACGCATTCTTCACAAAAAGCAATCAAA 2045
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1826 ATCAAAAGGACAGTAGCAAACACATCCCAATACACACATTCTTCACAAAGAGCAATCAAA 1885
Query 2046 ACTCTAACGAAACCCAGAGGAAATGA 2071
|||| |||||||||||||||||||||
Sbjct 1886 ACTCGAACGAAACCCAGAGGAAATGA 1911
> Ahg356151 jgi|Araly1|356151|fgenesh1_pg.C_scaffold_7003324
Length=1779
Score = 1413 bits (765), Expect = 0.0
Identities = 970/1065 (91%), Gaps = 29/1065 (3%)
Strand=Plus/Plus
Query 1587 AACGGTCCCAAATAGATTCCGGAAAGGTAATTCCAAATCAAGAGTGTATGAAAAAAGAAG 1646
|||| |||||||||||||| | ||||||||||||||||||||| ||| || | |||||||
Sbjct 737 AACGATCCCAAATAGATTCTGAAAAGGTAATTCCAAATCAAGAATGTGTGGAGAAAGAAG 796
Query 1647 AAAGGCTGCAAATATTGGAAGGAGATTCACTGCTCAAAAAATACAAGGAGTGCAAACCAG 1706
|||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 797 AAAGGCCGCAAGTATTGGAAGGAGATGCTCTGCTCAAAAAACACAAGGAGTGCAAACCAG 856
Query 1707 ATACTAGTCACTCGATGAATGATAATTCTAATG--C---A-ACCGAAGCAGTTTCAGTAT 1760
|||| | ||||| ||||||||||| || ||||| | | |||||||||||||||||||
Sbjct 857 ATACGAATCACTTGATGAATGATAGTTATAATGTACAAAACACCGAAGCAGTTTCAGTAT 916
Query 1761 TTCCACAAACGGAGCCGTTATATTGGATTGACGGCTACAAATGCGTCTTGTGTGGGATAG 1820
|||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| |
Sbjct 917 TTCCGCAAACGGAGCCATTATATTGGGTTGATGGGTACAAATGCGTCTTGTGTGGGATCG 976
Query 1821 AGTTACCACCATCTTTTGTAGAGGAACGACAAGAACACTCTGATTTTCATCTCGCTCAGA 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AGTTACCACCATCTTTTGTAGAGGAACGACAAGAACACTCTGATTTTCATCTCGCTCAGA 1036
Query 1881 GACTTCAAAACGAAGAAACTGGCTCTAGTTCTTCCACAACACCTTCAAAACGAAGGATTC 1940
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1037 GACTTCAAAACGAAGAATCTGGCTCGAGTTCTTCCACAACACCTTCAAAACGAAGGATTC 1096
Query 1941 TCGGAAAGGAAAAGGTAAATTCGAAGCCAAAGAAGCAGAAACCAGATCAAAAGGACAGTA 2000
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1097 TCGGAAAGGAAAAGGTAAATTCCAAACCAAAGAAGCAGAAACCAGATCAAAAGGACAGTA 1156
Query 2001 GCAAACACATCCCAATACACGCATTCTTCACAAAAAGCAATCAAAACTCTAACGAAACCC 2060
|| || ||| | | | | | |||||||||||||| |||||||| |
Sbjct 1157 GC-AA-ACA---C-A-A-A-G--------------AGCAATCAAAACTCGAACGAAACTC 1193
Query 2061 AGAGGAAATGAAGATGGCTCTGAGCCCACCGAAACTCATTCTCTCACCGTCCAATTCCCT 2120
||| ||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||
Sbjct 1194 AGAAGAAATGAAGATGGCTCTGATTCCAGCTAAACTCAATCTCTCACCGTCCAATTCCCT 1253
Query 2121 CGGCGATTCCAATTCCCTACCGTCGATGTCAGACATCCTGACGTCATCAAAAGCTCGAAA 2180
|| || |||| || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1254 GGGTGAACCCAAATCATTACCGTCGATGTCAGACATCCTGACATCATCAAGAGCTCGAAA 1313
Query 2181 GCTAGACTTAAAGATCCAGACTTTAGGACCGTTTTTCAGAGTGACAGGGAAGAACGCAGA 2240
| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 1314 GATAGACTTAAAGATCCAAACTTTAGGACCGTTTTTCAGAGTGACGGGGAAGAACTTAGA 1373
Query 2241 CACGGGCGGTGAGGTGGGAAGAGCAGAGGGAGTGGTGCGTCCATGGTTCGGACGCGGTTT 2300
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1374 AACAGGCAGTGAGGTGGGAAGAGCAGAGGGAGTGGTGCGTCCATGGTTCGGACACGGCTT 1433
Query 2301 GGTTCTGCATTTGGATACGATAAGACTGACGAAAGAGACAGTGGCTATGGATAAGTCTGT 2360
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1434 GGTTCTGCATTTGGATACGATAAGACTGACGAAAGAGACGGTGGCTATGGATAAATCTGT 1493
Query 2361 TCTTGGAGTTGGTTTATACGTCGGAGCTGTAGCGATTCGCCATGGCTACGACTGTGGTTG 2420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1494 TCTTGGAGTTGGTTTATACGTCGGAGCTGTAGCTATTCGCCATGGCTACGACTGTGGTTG 1553
Query 2421 CCGTACTGCTCAGCTTCTTGCTATCTACGACTCCGATCTCTACCATTCCAAGCTGGTTAG 2480
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CCGCACTGCTCAGCTTCTCGCTATCTACGACTCCGATCTCTACCATTCCAAGCTGGTTAG 1613
Query 2481 GTTTTACAGAAGAATTGGGTTCGAAGAGGTGAATGAAGTGAGTGGGTCGTCAATTGGAGA 2540
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1614 GTTTTACAGAAGAATTGGGTTCGAAGAGGTGAAAGAAGTGAGTGGGTCGTCGATTGGAGA 1673
Query 2541 CATGGCTGACATGTTAGTGTGGGGCGGAGTTGGTACTCGCATGGATGCTAATATCCATCA 2600
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1674 CATGGCTGACATGTTAATGTGGGGTGGAGTTGGTACTCGCATGGATGCTAATATACATCA 1733
Query 2601 TCTTCTTTTTAAATGGTCCAAAGTTTTCCTCAAATCACATTCTTA 2645
||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1734 TCTCCTTCTTAAATGGTCCAAAGTTTTCCTCAAATCACATTCTTA 1778
Score = 499 bits (270), Expect = 4e-140
Identities = 321/345 (93%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 1147 TGAACTTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGCCTAACAGCAAGAACGTT 1206
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 399 TGAAATTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGTCTAACAGCAAGGACGTT 458
Query 1207 GACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGTTAGCCTGCAGAG 1266
|| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 459 GATACTTCAACTGAAAACTACCTCCTTTGAGATCAGAAGCAGAGCTGTTAGCCTGCAGAG 518
Query 1267 GTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTTGAAGGCAGAACT 1326
||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 519 GTACACGTGTTCAAGTGATGATATACTAAAGCATGGTGCAAAGCTGTTGAAGGCGGAACT 578
Query 1327 TCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGAAGAAATCCGCAA 1386
||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 579 TCCTGTTTCCGTATTGTTGATAGGTTTGCGCATGTCGCAGTTTGTTGGAGAAATCCGCAA 638
Query 1387 TTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGATTCCTCAAGACA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 639 TTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGATTCTTCAAGACA 698
Query 1447 AGCACAAGATCTGGATGACAATGACTCATTTGACTTGGATGCTAA 1491
|| | ||||||||| ||||||||||||||||| ||||||||
Sbjct 699 AG-A-----TCTGGATGATAATGACTCATTTGACTTAGATGCTAA 737
> Ahg914106 jgi|Araly1|914106|Al_scaffold_0001_4360
Length=501
Score = 815 bits (441), Expect = 0.0
Identities = 481/501 (96%), Gaps = 0/501 (0%)
Strand=Plus/Plus
Query 2146 ATGTCAGACATCCTGACGTCATCAAAAGCTCGAAAGCTAGACTTAAAGATCCAGACTTTA 2205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGACATCCTGACGTCATCAAAAGCTCGAAAGCTAGACTTAAAGATCCAGACTTTA 60
Query 2206 GGACCGTTTTTCAGAGTGACAGGGAAGAACGCAGACACGGGCGGTGAGGTGGGAAGAGCA 2265
|||||||||||||||||||| |||||||||||||| || ||||||||||| ||| |||||
Sbjct 61 GGACCGTTTTTCAGAGTGACGGGGAAGAACGCAGATACAGGCGGTGAGGTAGGACGAGCA 120
Query 2266 GAGGGAGTGGTGCGTCCATGGTTCGGACGCGGTTTGGTTCTGCATTTGGATACGATAAGA 2325
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GAGGGAGTGGTGCGGCCATGGTTCGGACGCGGCTTGGTTCTGCATTTGGATACGATAAGA 180
Query 2326 CTGACGAAAGAGACAGTGGCTATGGATAAGTCTGTTCTTGGAGTTGGTTTATACGTCGGA 2385
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGACGAAAGAGACGGTGGCAATGGATAAGTCTGTTCTTGGAGTTGGTTTATACGTCGGA 240
Query 2386 GCTGTAGCGATTCGCCATGGCTACGACTGTGGTTGCCGTACTGCTCAGCTTCTTGCTATC 2445
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 241 GCTGTAGCTATTCGTCATGGCTACGACTGTGGTTGCCGCACTGCTCAACTTCTCGCTATC 300
Query 2446 TACGACTCCGATCTCTACCATTCCAAGCTGGTTAGGTTTTACAGAAGAATTGGGTTCGAA 2505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACGACTCCGATCTCTACCATTCCAAGCTGGTTAGGTTTTACAGAAGAATTGGGTTCGAA 360
Query 2506 GAGGTGAATGAAGTGAGTGGGTCGTCAATTGGAGACATGGCTGACATGTTAGTGTGGGGC 2565
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GAGGTGAAAGAAGTGAGTGGGTCGTCGATTGGAGACATGGCTGACATGTTAGTGTGGGGT 420
Query 2566 GGAGTTGGTACTCGCATGGATGCTAATATCCATCATCTTCTTTTTAAATGGTCCAAAGTT 2625
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct 421 GGAGTTGGTACTCGCATGGATGCTAATATCCATCATCTCCTTCTTAAATGGTACAAAGTT 480
Query 2626 TTCCTCAAATCACATTCTTAA 2646
|||||||||||||||||||||
Sbjct 481 TTCCTCAAATCACATTCTTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103148383460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5