BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49990.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474131 jgi|Araly1|474131|fgenesh2_kg.1__4085__AT1G49990.1 1286 0.0
> Ahg474131 jgi|Araly1|474131|fgenesh2_kg.1__4085__AT1G49990.1
Length=1372
Score = 1286 bits (696), Expect = 0.0
Identities = 825/884 (93%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 39 aagaaaacagagagaccaaaaaagaCTCTAATGGAGACTGGAAGAAGAAGAACAATCCCA 98
||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 19 AAG-AAACAGAGAGACCAAAAGAGACTCTAATGGAGACT-G--GAAGAAGAACAATCCCA 74
Query 99 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATTGCGAGGTTCAAATCAGTATGC 158
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 75 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATCGCGAGATTCAAATCAGTCTGC 134
Query 159 AAAAGATGGAAATCAGTAATAGAATCGGACTACTTCCGACGTCTCTTCGGATCTTTTCAC 218
|||||||||||||| || |||||||||| |||||||||||||||||| | ||| |||||
Sbjct 135 AAAAGATGGAAATCGGTGATAGAATCGGGCTACTTCCGACGTCTCTTTGTCTCTCTTCAC 194
Query 219 CGAAGCTCCTCTACCTCATGGTCGA-TCATGTTCAGAACAGAGTATCTTCGTGAGATGAC 277
||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 195 GGAAACTCCTCTACCTCATGGTC-ACTCATGTTCAGAACAGAGTATCTTCGTCAGATGAC 253
Query 278 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCTCTAGTTTCATA 337
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 254 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCACTACTTTCTTA 313
Query 338 TATCATGCCATTTCAAGAATATCCGAATCTCCCTA-C--CTCTGAATACTACTATATAGC 394
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 314 TATCATGCCATTTCAAGTATATCCGAATCTCCCTACCGGCTCTGAATACTACTATATAGC 373
Query 395 TTCTTCCAATGGATTGATTTGGATCGATGTGC-TTGTTTCTCGCATCAAGAACAAGGTTT 453
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||
Sbjct 374 TTCTTCCAATGGATTGATTTGGATCGATGT-CTTTGTTTCTCGCATCAAGGACATGGTTT 432
Query 454 ATAGTTATAAATCTTTCGTTGGTAATCCAGTTTTACAAGAATGGGTTGAGATCCCTCAAC 513
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 433 CTAGTTATAAATCTTTTGTTGGTAATCCAGTTTTACAACAATGGGTTGAGATCCCTCAAC 492
Query 514 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTACCCGAGTCC-ATATAGCGGCGTT 572
||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||
Sbjct 493 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTATCCGAGTCCGTTA-AGCGACGTT 551
Query 573 GGAATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGTTTCAAGATGGTTAGGACAGTC 632
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 552 GGTATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGCTTCAAGATAGTTAGGACAATC 611
Query 633 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 671
Query 693 TCTTCTGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCCACGGT 752
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 672 TCTTCGGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCAACGCT 731
Query 753 GGTAGAGTTGATTCTCCGGTGAATCTCAACGGG-GTTCTTTATATGTGGGATAGGTATAT 811
|||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 732 GGTAGAATTGATTCTCCGGTGAATCTCAATGGGAGT-CTTTATATGTGGGATAGGTATAT 790
Query 812 GTTTTCAAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGG--A-G---CTGATGA 865
|||||| |||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 791 GTTTTCTAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGGCCATGAAGCTGATGA 850
Query 866 TCAATGTCAGGTTATACCTCTCCCTGGCGCgaatgatgaacatg 909
||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 851 TCAATGTCAGGTTATACCTCTCCCTGGCGCGGATGATGAAGATG 894
Score = 793 bits (429), Expect = 0.0
Identities = 467/486 (96%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 931 atgaacatgTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 990
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ATGAAGATGTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 945
Query 991 TACATCGAATATTGAAAGCATGGAGGCTGCATAACAAAGAGAGTGAAAGGTGGCAACTGA 1050
|||||| || |||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 946 TACATCAAACATTGAAAGTATGGAGGCTGAATAACGAAGAGAGTGAAAGGTGGCAACTGA 1005
Query 1051 TTTGGGAAGTCGTCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1110
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TTTGGGAAGTCATCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1065
Query 1111 ATCCGTTTGATACTTATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1170
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 ATCCGTTTGATACTGATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1125
Query 1171 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGAATGGGAGTAGTAGTG 1230
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1126 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGGGTTGGAGTAGTAGTG 1185
Query 1231 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1245
Query 1291 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATCTTGGATGGACTCGGTACCCCGAC 1350
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1246 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATGTTGGATGGACTCGGTACCCCGAC 1305
Query 1351 CGCCAAATTGATTATCCTTCTTCGGGAAGCTTGTTCTTCGGTGTTTATGTATTTTTATGT 1410
||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||||| | |
Sbjct 1306 CGCCAGATTAATTATCATTCTTAGGGAAGCTTGTTCTTTGGTGTTTATGTATTTTTGTTT 1365
Query 1411 ATCCTT 1416
||||||
Sbjct 1366 ATCCTT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5