BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50000.1 Length=1020 Score E Sequences producing significant alignments: (Bits) Value Ahg914109 jgi|Araly1|914109|Al_scaffold_0001_4363 1347 0.0 Ahg356649 jgi|Araly1|356649|fgenesh1_pg.C_scaffold_8000436 501 4e-141 > Ahg914109 jgi|Araly1|914109|Al_scaffold_0001_4363 Length=888 Score = 1347 bits (729), Expect = 0.0 Identities = 837/890 (94%), Gaps = 4/890 (0%) Strand=Plus/Plus Query 9 ATGAGAGCGCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAGTCTCGTTCGT 68 |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1 ATGAGAGCTCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAATCTTGTTCGT 60 Query 69 TCATGGCTTCCGA-CTTCTAGCTTCAAATCGTTTGCTACTGTATCTTCGTCTCCTCCGTC 127 ||||||||||| | |||| |||||||| ||||||||| |||||||||||||||| ||||| Sbjct 61 TCATGGCTTCC-ACCTTCCAGCTTCAAGTCGTTTGCTTCTGTATCTTCGTCTCCACCGTC 119 Query 128 GGATTTGAATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTTTCCGATGATCT 187 ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 120 GGATTCGGATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTCTCCGATGATCT 179 Query 188 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 239 Query 248 AGTTCTTAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGGGGTCTAGT 307 |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 240 AGTTCTAAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGAGGTCTGGT 299 Query 308 AGAAGGCTGTATACAAAGCATAGACAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 367 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 AGAAGGCTGTATACAAAGCATAGATAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 359 Query 368 GAAGGTGATTCTTCCTCAGGGCATGCAGTGGCAGGTGTTTGCAGCTTTTGGAACTTTGAA 427 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 360 GAAGGTGATTCTTCCTCAGGGCATCCAGTGGCAGGTGTTTGCAGCTTTTGGAACTCTGAA 419 Query 428 GGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGCAGTGTCAC 487 ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| Sbjct 420 GGGTGGTCGAGCGGATTGGCTGGTTGAGAAATGTACAGAACTTGGAGCGAGTAGTGTCAC 479 Query 488 ACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGATTGGAACG 547 ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 480 CCCACTTTTAACCGAAAGATCTTCCATAATCTCTGAAAACCGGGTTGATAGATTGGAACG 539 Query 548 CGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTGAACCCTCC 607 ||||||||||||||| |||||||| |||||||| || |||||||||||| |||||||||| Sbjct 540 CGTTAGTTTTGCTGCGGCTAAGCAGTGCCAAAGGCTACATCAAATGGTATTGAACCCTCC 599 Query 608 AATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTGGTTGCTAC 667 ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 600 AATCAAATTTGATACCCTCTTGGGTCATATTTCCAAGTCAAAGTTATGTTTGGTTGCTAC 659 Query 668 AGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCCAGCGGACT 727 ||||||||||| ||| || || |||||||||||||||||| |||||||| |||| ||| | Sbjct 660 AGCCGAAGCTACACCACTCCTGAATGCAGTAAACTCCTCAACAAAAGAAACCAGTGGAAT 719 Query 728 ATTAATCGTTGGACCAGAAGGCGACTTTACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 787 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 720 ATTAATCGTTGGACCAGAAGGCGACTTCACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 779 Query 788 AGGCGGCACAGCAGTTGGACTGGGGCCACACCGGTTGCGAGTTGAGACCGCAACCATTGC 847 |||| |||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 780 AGGCAGCACAGCAGTTGGACTCGGACCGCACCGGTTGCGAGTTGAGACCGCAACCATTGC 839 Query 848 TCTT-TTGGCAACTCTAGTGATGTGGTCTGACTCTCAAGAGATGATCTAA 896 |||| ||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 840 TCTTCTTG-CAACTCTAGTGATGTGGTCTGACTCTCAAGAGACGGTCTAA 888 > Ahg356649 jgi|Araly1|356649|fgenesh1_pg.C_scaffold_8000436 Length=420 Score = 501 bits (271), Expect = 4e-141 Identities = 311/331 (94%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 420 ACTTTGAAGGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGC 479 |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 16 ACTTTGAAGGGTGGTCGAGCAGACTGGCTAATTGAGAAATGTACAGAGCTCGGAGCGAGC 75 Query 480 AGTGTCACACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGA 539 |||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct 76 AGTGTCACACCACTTTTAACGGAAAGATCATCCATAATCTCTGAAAACCGGGTTGACAGA 135 Query 540 TTGGAACGCGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG 599 |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 136 TTGGAACGTGTTAGTTTTGCCACGGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG 195 Query 600 AACCCTCCAATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTG 659 |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 196 AACCCTCCTATCAAATTTGTTACCCTCTTGGATCATATTTTCAAGTCAAAGTTATGTTTG 255 Query 660 GTTGCTACAGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCC 719 ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||| Sbjct 256 GTTGCCACAGCTGAAGCTACACCTCTTCTCAATGCAGTTAACTCCTTAGCAAAAGAATCC 315 Query 720 AGCGGACTATTAATCGTTGGACCAGAAGGCG 750 ||||||||||||||||||||| ||||||||| Sbjct 316 AGCGGACTATTAATCGTTGGATCAGAAGGCG 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37932302415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5