BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50000.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914109 jgi|Araly1|914109|Al_scaffold_0001_4363 1347 0.0
Ahg356649 jgi|Araly1|356649|fgenesh1_pg.C_scaffold_8000436 501 4e-141
> Ahg914109 jgi|Araly1|914109|Al_scaffold_0001_4363
Length=888
Score = 1347 bits (729), Expect = 0.0
Identities = 837/890 (94%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 9 ATGAGAGCGCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAGTCTCGTTCGT 68
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 ATGAGAGCTCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAATCTTGTTCGT 60
Query 69 TCATGGCTTCCGA-CTTCTAGCTTCAAATCGTTTGCTACTGTATCTTCGTCTCCTCCGTC 127
||||||||||| | |||| |||||||| ||||||||| |||||||||||||||| |||||
Sbjct 61 TCATGGCTTCC-ACCTTCCAGCTTCAAGTCGTTTGCTTCTGTATCTTCGTCTCCACCGTC 119
Query 128 GGATTTGAATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTTTCCGATGATCT 187
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GGATTCGGATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTCTCCGATGATCT 179
Query 188 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 239
Query 248 AGTTCTTAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGGGGTCTAGT 307
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 240 AGTTCTAAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGAGGTCTGGT 299
Query 308 AGAAGGCTGTATACAAAGCATAGACAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 367
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAGGCTGTATACAAAGCATAGATAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 359
Query 368 GAAGGTGATTCTTCCTCAGGGCATGCAGTGGCAGGTGTTTGCAGCTTTTGGAACTTTGAA 427
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 360 GAAGGTGATTCTTCCTCAGGGCATCCAGTGGCAGGTGTTTGCAGCTTTTGGAACTCTGAA 419
Query 428 GGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGCAGTGTCAC 487
||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 420 GGGTGGTCGAGCGGATTGGCTGGTTGAGAAATGTACAGAACTTGGAGCGAGTAGTGTCAC 479
Query 488 ACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGATTGGAACG 547
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 480 CCCACTTTTAACCGAAAGATCTTCCATAATCTCTGAAAACCGGGTTGATAGATTGGAACG 539
Query 548 CGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTGAACCCTCC 607
||||||||||||||| |||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 540 CGTTAGTTTTGCTGCGGCTAAGCAGTGCCAAAGGCTACATCAAATGGTATTGAACCCTCC 599
Query 608 AATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTGGTTGCTAC 667
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 600 AATCAAATTTGATACCCTCTTGGGTCATATTTCCAAGTCAAAGTTATGTTTGGTTGCTAC 659
Query 668 AGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCCAGCGGACT 727
||||||||||| ||| || || |||||||||||||||||| |||||||| |||| ||| |
Sbjct 660 AGCCGAAGCTACACCACTCCTGAATGCAGTAAACTCCTCAACAAAAGAAACCAGTGGAAT 719
Query 728 ATTAATCGTTGGACCAGAAGGCGACTTTACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 787
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 ATTAATCGTTGGACCAGAAGGCGACTTCACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 779
Query 788 AGGCGGCACAGCAGTTGGACTGGGGCCACACCGGTTGCGAGTTGAGACCGCAACCATTGC 847
|||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 780 AGGCAGCACAGCAGTTGGACTCGGACCGCACCGGTTGCGAGTTGAGACCGCAACCATTGC 839
Query 848 TCTT-TTGGCAACTCTAGTGATGTGGTCTGACTCTCAAGAGATGATCTAA 896
|||| ||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 840 TCTTCTTG-CAACTCTAGTGATGTGGTCTGACTCTCAAGAGACGGTCTAA 888
> Ahg356649 jgi|Araly1|356649|fgenesh1_pg.C_scaffold_8000436
Length=420
Score = 501 bits (271), Expect = 4e-141
Identities = 311/331 (94%), Gaps = 0/331 (0%)
Strand=Plus/Plus
Query 420 ACTTTGAAGGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGC 479
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 16 ACTTTGAAGGGTGGTCGAGCAGACTGGCTAATTGAGAAATGTACAGAGCTCGGAGCGAGC 75
Query 480 AGTGTCACACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGA 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 76 AGTGTCACACCACTTTTAACGGAAAGATCATCCATAATCTCTGAAAACCGGGTTGACAGA 135
Query 540 TTGGAACGCGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG 599
|||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 136 TTGGAACGTGTTAGTTTTGCCACGGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG 195
Query 600 AACCCTCCAATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTG 659
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 196 AACCCTCCTATCAAATTTGTTACCCTCTTGGATCATATTTTCAAGTCAAAGTTATGTTTG 255
Query 660 GTTGCTACAGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCC 719
||||| ||||| ||||||| ||||||||| |||||||| ||||||| |||||||||||||
Sbjct 256 GTTGCCACAGCTGAAGCTACACCTCTTCTCAATGCAGTTAACTCCTTAGCAAAAGAATCC 315
Query 720 AGCGGACTATTAATCGTTGGACCAGAAGGCG 750
||||||||||||||||||||| |||||||||
Sbjct 316 AGCGGACTATTAATCGTTGGATCAGAAGGCG 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5