BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50010.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474136 jgi|Araly1|474136|fgenesh2_kg.1__4090__AT1G50010.1 2706 0.0
Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1 2475 0.0
Ahg904952 jgi|Araly1|904952|Al_scaffold_0003_2080 544 1e-153
> Ahg474136 jgi|Araly1|474136|fgenesh2_kg.1__4090__AT1G50010.1
Length=1729
Score = 2706 bits (1465), Expect = 0.0
Identities = 1633/1712 (95%), Gaps = 20/1712 (1%)
Strand=Plus/Plus
Query 20 TAAAAACCTAGAAATCGAAAAAATCAGATCTAGATCTAAAAGAAGAGCGTCTTCATAAAC 79
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TAAAAACCTAGAAATCG-AAAAATCAGATCTAGATCT-AAAGAAGAGCGTCTTCATAAAC 58
Query 80 G-CC--cttcttcttcttcgtcttcttccctgcaaatctagtttctagatcttttctttc 136
| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 59 GCCCTTCTTCTTCTTCTTCGTGTTCTTCCCTGCAAATCTAGTTTCTAGATCTTTTCTTTC 118
Query 137 ttcCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCCGGTATCCAG 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCCGGTATCCAG 178
Query 197 GTCGGAAATGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGCCAG 256
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 179 GTCGGAAACGCTTGCTGGGAGCTTTATTGTCTTGAACATGGCATTCAGCCTGATGGTCAG 238
Query 257 ATGCCGAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGTGAG 316
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATGCCCAGTGACAAGACTGTAGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGTGAA 298
Query 317 ACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATC 358
Query 377 GATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAGCAACTCATCAGCGGT 436
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 GATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAACAACTCATCAGCGGT 418
Query 437 AAAGAAGACGCAGCTAACAATTTCGCCCGTGGGCATTACACCATTGGGAAAGAGATTGTT 496
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 419 AAAGAAGACGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAAAGAGATTGTT 478
Query 497 GATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTCCAAGGATTC 556
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATCTGTGTTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTCCAAGGATTC 538
Query 557 CTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGATCTCTCCTCCTTGAG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGATCTCTCCTCCTTGAG 598
Query 617 AGACTTTCTGTTGACTACGGGAAAAAGTCCAAGTTGGGTTTCACAGTTTACCCATCTCCA 676
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 599 AGACTTTCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTACCCATCTCCA 658
Query 677 CAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTCACTCTTG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTCACTCTTG 718
Query 737 GAACACACTGATGTCTCTATCCTCCTCGACAATGAAGCTATCTATGACATCTGCAGACGT 796
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAACACACTGATGTCTCCATCCTCCTCGACAATGAAGCTATCTATGACATCTGCAGACGC 778
Query 797 TCCCTAAGCATTGAGAGACCCACCTACACCAACCTCAACCGTCTCGTCTCTCAGGTTATC 856
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 779 TCCCTAAGCATTGAGAGACCAACCTACACCAACCTCAACCGTCTTGTCTCTCAGGTTATT 838
Query 857 TCATCCTTGACTGCTTCTCTGAGGTTCGATGGTGCCTTGAATGTTGATGTGACTGAGTTC 916
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 839 TCTTCCTTGACTGCTTCTCTGAGGTTCGATGGAGCCTTGAATGTTGATGTCACTGAGTTC 898
Query 917 CAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCCCCAGTC 976
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 CAAACCAACTTGGTCCCATACCCAAGAATCCACTTTATGCTTTCCTCCTATGCCCCAGTC 958
Query 977 ATCTCCGCAGAGAAGGCCTTCCATGAGCAGCTCTCGGTTGCTGAGATCACAAACAGTGCT 1036
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 959 ATCTCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCACAAACAGTGCT 1018
Query 1037 TTTGAGCCAGCATCCATGATGGCAAAGTGTGACCCTCGTCACGGAAAGTACATGGCTTGC 1096
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1019 TTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCTCGTCACGGGAAGTACATGGCCTGC 1078
Query 1097 TGTTTGATGTACCGTGGTGATGTCGTCCCCAAGGATGTGAACGCAGCTGTTGGCACCATC 1156
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1079 TGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTGAACGCAGCTGTTGGCACAATC 1138
Query 1157 AAGACCAAGCGTACTATTCAGTTTGTGGACTGGTGTCCTACTGGATTCAAGTGTGGAATC 1216
||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 1139 AAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCCACTGGGTTCAAGTGTGGTATC 1198
Query 1217 AACTACCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTCCAGAGAGCTGTG 1276
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 AACTACCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTGCAGAGAGCTGTT 1258
Query 1277 TGTATGATCTCAAACTCCACCAGTGTTGCTGAGGTGTTCTCCCGTATTGATCACAAGTTT 1336
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTATGATCTCAAACTCTACCAGTGTTGCTGAGGTGTTCTCCCGTATTGATCACAAGTTT 1318
Query 1337 GATCTTATGTACGCAAAACGTGCTTTCGTTCACTGGTATGTGGGTGAGGGTATGGAAGAA 1396
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTGAGGGTATGGAAGAA 1378
Query 1397 GGAGAATTTTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTACGAAGAGGTT 1456
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 GGTGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTATGAAGAGGTT 1438
Query 1457 GGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACTAAGAAG--GT-TGT 1513
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1439 GGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACTAAGAAGAAGGGTGT 1498
Query 1514 CGGTTTTATGTGGGATTTCTATTATCTCGTGTTTGTGTGAATAGGCTCGAAACTCTTACG 1573
||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1499 GGGTTTTATGTGGGCTTTCTGTTATCTCGTGTTTGTGTGAATGGGCTCGAAACTCTTACG 1558
Query 1574 AGTCGTACTTGTGTTTT-CAAAAACCATATTTCTATCTCTTGCTTGTGGCGGTAGCCATT 1632
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGTCCTAGTTGTGTTTTTCAAAAACCATATTTCTATCTCTTGCTTGTGGCGGTAGCCATT 1618
Query 1633 TG-TT-CTAGT-TCGTTTGTTTCTGATAATATTTTCATCTCCAAGAACTGAATTTAAGCT 1689
|| || ||| | || | ||| | | | | | ||||| ||||||||||||||||||| |
Sbjct 1619 TGATTTCTATTATC-TA-GTT-C-G-T--T-TGTTCATTTCCAAGAACTGAATTTAAGAT 1670
Query 1690 GGGTTTGGTTTAAATCGATTGTCCAAAATCTA 1721
||||||||||| ||| |||||||||||| |||
Sbjct 1671 GGGTTTGGTTTGAATTGATTGTCCAAAACCTA 1702
> Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1
Length=1707
Score = 2475 bits (1340), Expect = 0.0
Identities = 1570/1676 (94%), Gaps = 35/1676 (2%)
Strand=Plus/Plus
Query 63 AGAGCGTCTTCATAAACGCCcttcttcttcttcgtcttcttccctgcaaatctagtttct 122
||||||||||||||||||||||||||| ||||| ||||||||||||| || | |||
Sbjct 26 AGAGCGTCTTCATAAACGCCCTTCTTCGTCTTCTTCTTCTTCCCTGC-AA---A---TCT 78
Query 123 agatcttttctttcttcCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTC 182
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 AG----TTTCTTTCTTCCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTC 134
Query 183 AGGCCGGTATCCAGGTCGGAAATGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTC 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 135 AGGCCGGTATCCAGGTCGGAAACGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTC 194
Query 243 AGCCTGATGGCCAGATGCCGAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACA 302
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AGCCTGATGGTCAGATGCCCAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACA 254
Query 303 CCTTCTTCAGTGAGACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTG 362
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CCTTCTTCAGTGAAACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTG 314
Query 363 AGCCAACTGTGATCGATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAGC 422
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 315 AGCCAACTGTGATCGATGAGGTTAGGACTGGTACATACCGTCAGCTTTTCCACCCTGAGC 374
Query 423 AACTCATCAGCGGTAAAGAAGACGCAGCTAACAATTTCGCCCGTGGGCATTACACCATTG 482
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 375 AACTCATCAGCGGTAAAGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTG 434
Query 483 GGAAAGAGATTGTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GGAAAGAGATTGTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTG 494
Query 543 GTCTCCAAGGATTCCTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGAT 602
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 495 GTCTCCAAGGATTCCTTGTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTTGGAT 554
Query 603 CTCTCCTCCTTGAGAGACTTTCTGTTGACTACGGGAAAAAGTCCAAGTTGGGTTTCACAG 662
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 555 CTCTCCTCCTTGAGAGACTTTCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTG 614
Query 663 TTTACCCATCTCCACAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCA 722
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 615 TTTACCCATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCA 674
Query 723 CTCACTCACTCTTGGAACACACTGATGTCTCTATCCTCCTCGACAATGAAGCTATCTATG 782
||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 675 CTCACTCTCTCTTGGAACACACTGATGTCTCCATCCTCCTCGATAACGAAGCTATCTATG 734
Query 783 ACATCTGCAGACGTTCCCTAAGCATTGAGAGACCCACCTACACCAACCTCAACCGTCTCG 842
||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 735 ACATCTGCAGACGCTCCCTAAGCATTGAGCGACCAACCTACACCAACCTCAACCGTCTTG 794
Query 843 TCTCTCAGGTTATCTCATCCTTGACTGCTTCTCTGAGGTTCGATGGTGCCTTGAATGTTG 902
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 795 TCTCTCAGGTGATCTCATCCTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGG 854
Query 903 ATGTGACTGAGTTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCCT 962
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 855 ATGTCACTGAGTTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGT 914
Query 963 CCTATGCCCCAGTCATCTCCGCAGAGAAGGCCTTCCATGAGCAGCTCTCGGTTGCTGAGA 1022
|||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 915 CCTACGCACCAGTCATCTCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGA 974
Query 1023 TCACAAACAGTGCTTTTGAGCCAGCATCCATGATGGCAAAGTGTGACCCTCGTCACGGAA 1082
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |
Sbjct 975 TCACAAACAGTGCTTTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCACGTCATGGCA 1034
Query 1083 AGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTCGTCCCCAAGGATGTGAACGCAG 1142
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1035 AGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTGAACGCAG 1094
Query 1143 CTGTTGGCACCATCAAGACCAAGCGTACTATTCAGTTTGTGGACTGGTGTCCTACTGGAT 1202
|||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 1095 CTGTTGGCACAATCAAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCCACTGGGT 1154
Query 1203 TCAAGTGTGGAATCAACTACCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAG 1262
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAG 1214
Query 1263 TCCAGAGAGCTGTGTGTATGATCTCAAACTCCACCAGTGTTGCTGAGGTGTTCTCCCGTA 1322
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1215 TCCAGAGAGCTGTTTGTATGATCTCAAATTCCACCAGTGTTGCTGAGGTGTTCTCCCGTA 1274
Query 1323 TTGATCACAAGTTTGATCTTATGTACGCAAAACGTGCTTTCGTTCACTGGTATGTGGGTG 1382
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1275 TTGATCACAAGTTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTG 1334
Query 1383 AGGGTATGGAAGAAGGAGAATTTTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGG 1442
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1335 AGGGTATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGG 1394
Query 1443 ATTACGAAGAGGTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACT 1502
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 ATTATGAAGAGGTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACT 1454
Query 1503 AAGAAGGTTGTCGGTTTTATGTGGGATTTCTATTAT-----CTCGTGTTTGTGTGAATAG 1557
||||||| ||| ||||||||||||| |||||||||| ||||| ||||||||| | |
Sbjct 1455 AAGAAGGGTGTGGGTTTTATGTGGGCTTTCTATTATATTATCTCGTATTTGTGTGAGTGG 1514
Query 1558 GCTCGAAACTCTTACGAGTCGTACTTGT-GTTTTC-AAAAACCATATTTCTATCTCTTGC 1615
|||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||
Sbjct 1515 GCTCGAAACTCTTACGAGTC-T--TTGTTGTTTTCCAAAAACCATATTTCTATCTCTTGC 1571
Query 1616 TTGTGGCGGTAGCCATTTGTTCTAG-TTC-GTTTGTTTCTGATAATAT-T-TTCATCTCC 1671
||||||||||||||||||||| || || || |||| || | |||| | || |||| |
Sbjct 1572 TTGTGGCGGTAGCCATTTGTTTTATATTATGTA-GTTT-TG-TCATATCTCTT-ATCTAC 1627
Query 1672 AAGAACTGAATTTAAGCT---G--G-GTTTGGTTTAAATCGATTGTCCAAAATCTA 1721
||||||||||||||| || | | ||||||||| ||||||||||||||||||||
Sbjct 1628 AAGAACTGAATTTAACCTTAAGCTGAGTTTGGTTTGAATCGATTGTCCAAAATCTA 1683
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 20 TAAAAACCTAGAAATCGAAAAAATCAGA 47
||||||||||||||||||||||||||||
Sbjct 1 TAAAAACCTAGAAATCGAAAAAATCAGA 28
> Ahg904952 jgi|Araly1|904952|Al_scaffold_0003_2080
Length=714
Score = 544 bits (294), Expect = 1e-153
Identities = 434/502 (86%), Gaps = 7/502 (1%)
Strand=Plus/Plus
Query 313 TGAGACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGT 372
||| || |||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct 111 TGAAACTGGTGCAGGAAAGCATGTTCCTCGAGCTGTCTTCGTTGATCTTGAGCCCACTGT 170
Query 373 GATCGATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAGCAACTCATCAG 432
||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 GATTGACGAGGTCAGAACTGGTACATACCGTCAGCTTTTCCACCCTGAGCAACTCATCAG 230
Query 433 CGGTAAAGAAGACGCAGCTAACAATTTCGCCCGTGGGCATTACACCATTGGGAAAGAGAT 492
||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 231 CGGCAAAGAGGATGCAGCTAACAATTTCGCTCGTGGACATTACACCATTGGGAAGGAGAT 290
Query 493 TGTTGATCTGTG-CTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTCCAAG 551
||||||||| || || | |||| ||||| |||||| | || ||||| ||||||||||| |
Sbjct 291 TGTTGATCTCTGTCTAG-ACCGCATCAGGAAGCTCACCGACAACTGCACTGGTCTCCAGG 349
Query 552 GATTCCTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGATCTCTCCTCC 611
| ||||| || |||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 350 GGTTCCTAGTATTCAACGCTGTTGGTGGAGGTACTGGATATGGTCTTGGATCTCTGCTCC 409
Query 612 TTGAGAGACTTTCTGTTGACTACGGGAA-AAAGTCCAAGTTGGGTTTCAC-AGTTTACCC 669
||||| | || ||||| ||||| || || ||| ||||| ||||||||||| | | |||||
Sbjct 410 TTGAGTGTCTCTCTGTGGACTATGGAAAGAAA-TCCAAATTGGGTTTCACTA-TGTACCC 467
Query 670 ATCTCCACAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTC 729
|| || ||||| || | | |||||||||||| ||||||||||| || ||||| |||||
Sbjct 468 TTCACCTCAGGTTTCAATATATGTTGTTGAGCCATACAACAGTGTTCTTTCCACCCACTC 527
Query 730 ACTCTTGGAACACACTGATGTCTCTATCCTCCTCGACAATGAAGCTATCTATGACATCTG 789
||||||||||| ||||||| |||| ||||| |||||||||||||| ||||| ||||||||
Sbjct 528 ACTCTTGGAACCCACTGATATCTCCATCCTTCTCGACAATGAAGCCATCTACGACATCTG 587
Query 790 CAGACGTTCCCTAAGCATTGAG 811
|||||||||| | |||||||||
Sbjct 588 CAGACGTTCC-TCAGCATTGAG 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5