BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50040.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914113 jgi|Araly1|914113|Al_scaffold_0001_4367 2102 0.0
Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1 350 2e-95
> Ahg914113 jgi|Araly1|914113|Al_scaffold_0001_4367
Length=1380
Score = 2102 bits (1138), Expect = 0.0
Identities = 1308/1389 (94%), Gaps = 15/1389 (1%)
Strand=Plus/Plus
Query 107 ATGGATCCTTGCTCTTTCGTACGCATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGA 166
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCGTGCTCTTTCGTACGTATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGG 60
Query 167 TCACCGTCGTCATCATCGTCGTCTTCTTCTTCATCTGGACCGTCTGTTTCGGATGTATCC 226
||| ||||| ||| ||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 61 TCA---TCGTCGTCA---TCG---TCTTCGTCATCGGGACCGTCTGTTTCGGATGTATCC 111
Query 227 TCTGGTAATTGCTATTGTAAAATCAAGTTCAAGAGTTTCCCACGCCAGATTGTTTCTGTT 286
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 112 TCCGGTAATTGCTATTGTAAGATCAAATTCAAGAGTTTCCCACGCCAGATTGTTTCTGTT 171
Query 287 CCCGTTCTGTTGCGAACCGAATCGGAATCAGAGTCTCGGTGTTGTTCCGGTAACGTCTCA 346
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 CCCGTTCTGTTACGAACCGAATCGGAATCAGAGTCTCGGTGTTGCTCCGGTAACGTCTCA 231
Query 347 ACCGTCGCTGCTTGCTTTAGTCTAAGTAAGTCTCAGATTGAGACGTCTCTTAAGAAGGCT 406
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 232 ACCGTCGCTGCTTGCTTTAGTCTAAGCAAGTCTCAGATTGAGACGTCTCTTAAGAAGCCC 291
Query 407 AAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCCGTAGTGCGTCGTGTGGATTTGTC 466
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 292 AAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCGGTGGTGCGTCGTGTGGATTCGTC 351
Query 467 GCTGCTTCCGGTGAGAAGCTGATTGGTCGGTTTCAGGTTACGCTTGATTTGAAGGCGGCG 526
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 352 GCTGCTTCCGGTGAGAAGCTGATTGGTCGGTTTGAGGTTACGCTTGATTTGAAGGCGGCG 411
Query 527 GAGTCAAAGACGTGTTTGGCACACAACGGCTGGGTTGATTTGGGCACTAAATCGAAGAAT 586
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GAGACGAAGACGTGTTTCGCACACAACGGCTGGGTTGATTTGGGCACTAAATCGAAGAAT 471
Query 587 AATAAGAAGTCCGGGTCGGATCCTGAGCTCCACGTTAGCGTACGGGTTGAACCCGACACG 646
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 472 AAGAAGAAGTCCGGGTCGGATCCGGAGCTCCACGTTAGCGTACGGGTTGAACCCGACCCG 531
Query 647 AGGTTTGTGTTTCAATTCGACGGCGAGCCCGAGTGTAGTCCTCAGGTTTTTCAAGTCCAA 706
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 532 AGATTTGTGTTTCAATTTGACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAA 591
Query 707 GGAAACGCAAAACAAGCTGTTTTCACTTGCAAGTTCGGGTTCAGAAACTCCGGTGATCGG 766
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 592 GGAAACACAAAACAAGCTGTTTTCACTTGCAAGTTCGGGTTCAGAAACTCCGGTGACCGC 651
Query 767 AATCTTAGTCTCAGCTTATCATCGGTGACAAGTGGAAAGGAACAGTTTTCAAAAGAGAGA 826
|||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||
Sbjct 652 AATCTTAGTCTCAGCTTATCGTCGTTGACGAGTGGAAAGGAACAGTTTTTGAAAGAGAGA 711
Query 827 AAAGGTTGGTCGATAACGATCCATGATCTCTCTGGTTCACCAGTAGCTATGGCTTCAATG 886
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 712 AAAGGTTGGTCGATAACGATCCATGATCTATCTGGTTCACCAGTGGCTATGGCTTCAATG 771
Query 887 GTCACACCTTTCGTACCATCTCCTGGTTCCAACCGCGTCTCTCGGTCTAGTCCTGGAGCT 946
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 772 GTCACACCTTTCGTACCATCTCCTGGTTCCAACCGCGTGTCACGGTCTAATCCTGGAGCT 831
Query 947 TGGCTAATCCTCAGACCTGATGGCTACACCTGGAAGCCATGGGTTCGCCTTCAGGCATGG 1006
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 832 TGGCTAATCCTCAGACCTGATGGCTACACCTGGAAGCCATGGGGTCGCCTTCAAGCATGG 891
Query 1007 CGTGAACCAGGCGTCTCCGATGTTCTAGGTTACCGTTTCGAGCTTTATAAAGACGGTATC 1066
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 892 CGTGAGCCAGGCGTCTCCGACGTTCTAGGTTACCGTTTTGAGCTTTATAAAGACGGTATC 951
Query 1067 GCTGTTGCAGTCTCTGCTTCCTCGTCGATCAGCACAAAACTTGGCGGGAGTTTCATCATT 1126
|| |||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 952 GCCATTGCAGTCTCTGCTTCATCCTCGATCAGCACAAAACTTGGCGGGAGTTTTAGCATT 1011
Query 1127 GATGGATCCA-CT-T----CTACGACTACGACTGCTTCTTGGAGTAGCTCTGAAGGAAGT 1180
|||||||||| || | ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1012 GATGGATCCACCTCTACAACTACGACTAGGACTGCTTCTTTGAGTAGCTCTGAAGGAAGT 1071
Query 1181 TTCGATCTTTCTTCGTGGTCAAGCATCAGATCATCAAGAACTGATTCAGGATCGGGGTCG 1240
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1072 TTCGATCTTTCTTCCTGGTCAAGCATCAGATCATCAAGAACTGATTCAGGATCCGGGTCG 1131
Query 1241 GATTTCAGGTTCTCACTGTCTCAAGCGCAACAAAACTTGGGGTTTGTGATGTCGACGAGG 1300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GATTTCAGGTTCTCACTGTCCCAAGCGCAACAAAACTTGGGGTTTGTGATGTCGACGAGG 1191
Query 1301 GTGCAAGGAGTGGAGAAACAGAGCAAGCCTAAGGTGGAGGTAGGTGTGAAGCACGTGACT 1360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GTGGAAGGAGTGGAGAAACAGAGCAAGCCTAAGGTGGAGGTAGGTGTGAAGCACGTGACT 1251
Query 1361 TGTACGGAGGATGCGGCGGCGCACGTGGCACTAGCAGCGGCGGTGGATCTAAGCATGGAT 1420
|||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1252 TGTAGGGAGGATGCGGCGGCTCACGTGGCACTATCAGCGGCGGTGGATCTAAGCATGGAT 1311
Query 1421 GCTTGTAGGCTCTTCTCTCAGAAGCTAAGAAATGAGCTGAGACAGCCAAGTCGTGTTGAT 1480
|||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||
Sbjct 1312 GCTTGTAGGCTCTTCTCTCATAAGCTAAGAAAAGAGCTGAGACAGCTAAGTCGTGTAGAT 1371
Query 1481 ATCGTTTGA 1489
||||||||
Sbjct 1372 GTCGTTTGA 1380
> Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1
Length=1800
Score = 350 bits (189), Expect = 2e-95
Identities = 537/693 (77%), Gaps = 71/693 (10%)
Strand=Plus/Plus
Query 105 CAATGGATCCTTGCTCTTTCGTACGCATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGA 164
|||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||| | |
Sbjct 116 CAATGGATCCGTGCTCTTTCGTACGGATCATCGTCGGTAACTTGGCCGTTAGGTTT-C-A 173
Query 165 GATCACCGTCGTCATCATCGTCGTCTTCTTCTTCATCTGGACCGTCTGTTT-CGG-ATGT 222
| ||| ||| || | |||||||| ||| ||||||||||||| ||| ||
Sbjct 174 G-TCA---TCG------TC-T--TCTTCTTCGTCA---GGACCGTCTGTTTCCGGTATCA 217
Query 223 ATCC-T---CTGGTAATTGCTATTGTAAAATCAAG-TTCAAGAGTTTCCCACGCCAGATT 277
|||| | || ||| || || || |||||| || ||||||| ||| || ||| |||||
Sbjct 218 ATCCGTCGGCTCCTAACTGTTACTGCAAAATC-AGATTCAAGAATTTTCCTCGCGAGATT 276
Query 278 GTTTCTGTTCCCGTTCTGTTGCGAACCGAATCGGAATCAGAGTCTCGGTGTTGTTCCGGT 337
|||||| |||| ||| |||| ||||| ||||| ||||| ||| |||| |||| ||||||
Sbjct 277 GTTTCTATTCCGGTTATGTTCCGAACTGAATCTGAATCCGAGACTCGTTGTTCCTCCGGT 336
Query 338 AACGTCTCAACCGTCGCTGCTTGCTTT-AGTCTAAGT-AAGTCTCAGATTG-AGACGTCT 394
|||||||| |||||||||||||| ||| ||| ||||| ||| ||||||| | || |||||
Sbjct 337 AACGTCTCTACCGTCGCTGCTTG-TTTCAGTTTAAGTAAAG-CTCAGATCGAAG-CGTCT 393
Query 395 CTT-AAGAAGGCTAAATGGAGTGTTCTCTCCGTCGAGG-TTTACTCTCGCCG----T--- 445
|| ||||| |||| | ||||||||||||||| |||| ||| || ||| | |
Sbjct 394 -TTGAAGAAACCTAAGTTGAGTGTTCTCTCCGTTGAGGCTTT-TTCCCGCGGAAATTGCG 451
Query 446 A--GTG-CGTC-GTG-T----G-G-AT-TTGTCG-CT-GCTTC--C-GGTGAGAAGCTGA 488
| | | || | ||| | | | | ||| | || ||| | | ||||||||| ||
Sbjct 452 ACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGGACTCGCTACGGCGGGTGAGAAGTTGC 511
Query 489 TTGGTCGGTTTCAGGTTACGCTT-GATTTGAAGGCGGCGGAGTCAAAGACGTGTTTGGCA 547
||||||| ||| ||||| || || |||||||| |||||||| | ||||| ||||||||
Sbjct 512 TTGGTCGATTTGAGGTTTCG-TTGGATTTGAAATCGGCGGAGGCGAAGACTTGTTTGGCG 570
Query 548 CACAACGGCTGGGTTGATTT--GGGC-ACTAAATCGAAGAATAATAAGAAGTCCGGGTCG 604
|| ||||| ||||||| ||| | | | ||||||||| | | | || || || ||
Sbjct 571 CATAACGGTTGGGTTGCTTTACCGTCTAAGAAATCGAAG---AGT-A-AA-TCTGGATCC 624
Query 605 GATCCTGAGCTCCACGTTAGCGTACGGGTTGAACCCGACACGAGGTTTGTGTTTCAATTC 664
||||| |||||||| |||||||| ||||| ||||| ||| |||| || |||||||| |||
Sbjct 625 GATCCGGAGCTCCATGTTAGCGTTCGGGTCGAACCTGACCCGAGATTCGTGTTTCAGTTC 684
Query 665 GACGGCGAGCCCGAGTGTAGTCCTCAGGTTTTTCAAGTCCAAGGAAACGCAAAACAAGCT 724
||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 685 GACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTCCAAGGAAACACTAAGCAAGCC 744
Query 725 GTTTTCACTTGCAAGTTCGGGTTCAGAAACTCC 757
|| ||||||||||||||||| | ||||||||||
Sbjct 745 GTGTTCACTTGCAAGTTCGGCTCCAGAAACTCC 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5