BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50050.1 Length=681 Score E Sequences producing significant alignments: (Bits) Value Ahg914005 jgi|Araly1|914005|Al_scaffold_0001_4259 344 5e-94 Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368 176 2e-43 Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2 156 2e-37 > Ahg914005 jgi|Araly1|914005|Al_scaffold_0001_4259 Length=354 Score = 344 bits (186), Expect = 5e-94 Identities = 304/359 (85%), Gaps = 16/359 (4%) Strand=Plus/Plus Query 96 CACTCACAACACCGCCCGTGCGCAGGTTGGAGTAGCGAATGTTGTGTGGGACACAGTC-G 154 ||||||||||||| |||||||||||||||||||| | || || |||||||||||| | | Sbjct 1 CACTCACAACACC-CCCGTGCGCAGGTTGGAGTACCAAACGTCGTGTGGGACACA-ACGG 58 Query 155 TAGCGGCCTACGCAACAAACTATGCGAATGCTAGAAAAGTCGACTGCAGCCTCACGCCCT 214 | ||| |||||||| |||||||||||| |||||||||||||||||||||| | || Sbjct 59 TCGCGACCTACGCATTGAACTATGCGAATTCTAGAAAAGTCGACTGCAGCCTTA----CT 114 Query 215 CAACT--GGAGGATCTTATGGAGAAAACCTAGCCAATGGAAATAATGCCT-TGTTCACAG 271 |||| |||||| | ||||||||||||||||| | |||| || || || | ||||||| Sbjct 115 -AACTCGGGAGGACCATATGGAGAAAACCTAGCTAGGGGAAGTAGTG-CTATCTTCACAG 172 Query 272 GTGTAGCCGCCGT-GAATCTTTGGGTTAACGAGAAACCTTACTACAACTACA-CTGCCAA 329 | ||| | ||||| | || |||||| ||||||||||||||||||| ||| | | ||| Sbjct 173 GCGTATCGGCCGTGGCTTC-TTGGGTCGCCGAGAAACCTTACTACAACCACACCAG-CAA 230 Query 330 TGCATGCATAGGTGCACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT 389 | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 TTCTTGCATAGGTGGACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT 290 Query 390 GAAGATAGGGTGTGCTAGGGTTCTATGCAACAATGGCGGGTATTTCGTGGGTTGTAACT 448 |||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||| Sbjct 291 GAAGATAGGGTGTGCTAGAGTTCCATGCAACAATGGTTGGTATTTCGTTAGTTGTAACT 349 > Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368 Length=294 Score = 176 bits (95), Expect = 2e-43 Identities = 108/114 (95%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 460 GCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGGA-GC 518 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 94 GCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG-ATGC 152 Query 519 GAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTTCACTTGC 572 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 153 GAGTGCTGCTTGTGGTCAGCTGAGAAATAAGTTTCAGAAAAGCCCTTTACTTGC 206 > Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2 Length=1588 Score = 156 bits (84), Expect = 2e-37 Identities = 105/114 (92%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 453 TGCATCTGCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACT 512 ||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1183 TGCATCTGC-G--TTGGAGTCGCGTAAGATAACAGCAAGCGTAAGACAAACAAGAGGACT 1239 Query 513 TGGA-GCGAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTT 565 || | ||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1240 TG-ATGCGAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTT 1292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25008633552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5