BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50050.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914005 jgi|Araly1|914005|Al_scaffold_0001_4259                    344    5e-94
  Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368                    176    2e-43
  Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2         156    2e-37


> Ahg914005 jgi|Araly1|914005|Al_scaffold_0001_4259
Length=354

 Score =  344 bits (186),  Expect = 5e-94
 Identities = 304/359 (85%), Gaps = 16/359 (4%)
 Strand=Plus/Plus

Query  96   CACTCACAACACCGCCCGTGCGCAGGTTGGAGTAGCGAATGTTGTGTGGGACACAGTC-G  154
            ||||||||||||| |||||||||||||||||||| | || || ||||||||||||  | |
Sbjct  1    CACTCACAACACC-CCCGTGCGCAGGTTGGAGTACCAAACGTCGTGTGGGACACA-ACGG  58

Query  155  TAGCGGCCTACGCAACAAACTATGCGAATGCTAGAAAAGTCGACTGCAGCCTCACGCCCT  214
            | ||| ||||||||   |||||||||||| |||||||||||||||||||||| |    ||
Sbjct  59   TCGCGACCTACGCATTGAACTATGCGAATTCTAGAAAAGTCGACTGCAGCCTTA----CT  114

Query  215  CAACT--GGAGGATCTTATGGAGAAAACCTAGCCAATGGAAATAATGCCT-TGTTCACAG  271
             ||||  |||||| | ||||||||||||||||| |  |||| || || || | |||||||
Sbjct  115  -AACTCGGGAGGACCATATGGAGAAAACCTAGCTAGGGGAAGTAGTG-CTATCTTCACAG  172

Query  272  GTGTAGCCGCCGT-GAATCTTTGGGTTAACGAGAAACCTTACTACAACTACA-CTGCCAA  329
            | ||| | ||||| |  || ||||||   ||||||||||||||||||| ||| | | |||
Sbjct  173  GCGTATCGGCCGTGGCTTC-TTGGGTCGCCGAGAAACCTTACTACAACCACACCAG-CAA  230

Query  330  TGCATGCATAGGTGCACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT  389
            | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  TTCTTGCATAGGTGGACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT  290

Query  390  GAAGATAGGGTGTGCTAGGGTTCTATGCAACAATGGCGGGTATTTCGTGGGTTGTAACT  448
            |||||||||||||||||| |||| ||||||||||||  ||||||||||  |||||||||
Sbjct  291  GAAGATAGGGTGTGCTAGAGTTCCATGCAACAATGGTTGGTATTTCGTTAGTTGTAACT  349


> Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368
Length=294

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 108/114 (95%), Gaps = 2/114 (2%)
 Strand=Plus/Plus

Query  460  GCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGGA-GC  518
            ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  94   GCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG-ATGC  152

Query  519  GAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTTCACTTGC  572
            ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  153  GAGTGCTGCTTGTGGTCAGCTGAGAAATAAGTTTCAGAAAAGCCCTTTACTTGC  206


> Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2
Length=1588

 Score =  156 bits (84),  Expect = 2e-37
 Identities = 105/114 (92%), Gaps = 5/114 (4%)
 Strand=Plus/Plus

Query  453   TGCATCTGCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACT  512
             ||||||||| |  ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1183  TGCATCTGC-G--TTGGAGTCGCGTAAGATAACAGCAAGCGTAAGACAAACAAGAGGACT  1239

Query  513   TGGA-GCGAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTT  565
             || | ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  1240  TG-ATGCGAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTT  1292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5