BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50060.1
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474142 jgi|Araly1|474142|fgenesh2_kg.1__4096__AT1G50060.1 752 0.0
Ahg923313 jgi|Araly1|923313|scaffold_104594.1 135 3e-31
> Ahg474142 jgi|Araly1|474142|fgenesh2_kg.1__4096__AT1G50060.1
Length=488
Score = 752 bits (407), Expect = 0.0
Identities = 461/488 (94%), Gaps = 0/488 (0%)
Strand=Plus/Plus
Query 1 ATGAATACTTTCAAAACCCCTTTTCTCGTCATCGTTGCGATTAGCTTTCTTGTTGTTGCA 60
|||||||||||||||||||| | || | ||||||||||||||||| || || |||||
Sbjct 1 ATGAATACTTTCAAAACCCCATCAGTCCTAATCGTTGCGATTAGCTTCCTGGTAATTGCA 60
Query 61 ACCAATGCTCAAAACACTCCACAAGACTACCTTAACTCTCACAACACCGCTCGTGCGCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCAATGCTCAAAACACTCCACAAGACTACCTTAACTCTCACAACACCGCTCGTGCGCAG 120
Query 121 GTTGGAGTACCGAACGTGGTGTGGGACACAACTCTCGCGGCCTACGCATTGAACTATTCA 180
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |
Sbjct 121 GTTGGAGTACCGAACGTCGTGTGGGACACAACGCTCGCGACCTACGCATTGAACTATGCG 180
Query 181 AATTTTAGAAAAGCCGACTGCAACCTTGTTCACTCCAACGGACCATATGGAGAAAACCTA 240
|||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTCTAGAAAGGCCAACTGCAGCCTTGTTCACTCCAACGGACCATATGGAGAAAACCTA 240
Query 241 GCCAAGGGAAGTAGTTCCTCGTTCTCGGCCATCTCGGCCGTCAAACTTTGGGTCGACGAG 300
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GCCAAGGGGAGTAGTTCCACGTTCTCGGGCATCTCGGCCGTCAAACTTTGGGTCGACGAG 300
Query 301 AAACCTTACTACAGCTACGCATACAATAATTGCACAGGTGGAAAACAATGCTTGCATTAC 360
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 301 AAACCTTACTACAGCTACGCATATAACAATTGCACAGGTGGAAAACAATGCTTGCATTAC 360
Query 361 ACGCAAGTGGTGTGGAGAGATTCAGTGAAGATAGGGTGTGCTAGGGTTCAATGCACCAAT 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ACGCAAGTGGTGTGGAGAGACTCAGTGAAGATAGGGTGTGCTAGGGTTCAATGCACTAAT 420
Query 421 ACTTGGTGGTTCGTGAGTTGTAACTATAACTCACCCGGTAATTGGGTCGGAGAGTACCCT 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 ACTTGGTGGTTCGTGAGTTGTAACTATGACTCACCCGGTAATTGGGTCGGAGAGTACCCT 480
Query 481 TACTGATC 488
||||||||
Sbjct 481 TACTGATC 488
> Ahg923313 jgi|Araly1|923313|scaffold_104594.1
Length=373
Score = 135 bits (73), Expect = 3e-31
Identities = 127/152 (84%), Gaps = 7/152 (5%)
Strand=Plus/Plus
Query 172 AACTATTCAAATTTTAGAAAAGCCGACTGCAACCTTGTTCACTCCAAC-GG---ACCATA 227
|||||| | |||| |||||||||||||||||| ||| ||||| | || || ||||||
Sbjct 129 AACTATGCGAATTCTAGAAAAGCCGACTGCAATCTTACTCACT-CGACAGGATCACCATA 187
Query 228 TGGAGAAAACCTAGCCAAGGGAAGTAGTTCCTCGTTCTC-GGCCATCTCGGCCGTCAAAC 286
||||||||||||||||||||||||||||||| ||||| | ||| | |||||||| || |
Sbjct 188 TGGAGAAAACCTAGCCAAGGGAAGTAGTTCCACGTTCACAGGCG-TATCGGCCGTGAATC 246
Query 287 TTTGGGTCGACGAGAAACCTTACTACAGCTAC 318
||||||||| ||||||| ||||||| ||||
Sbjct 247 TTTGGGTCGCCGAGAAAAAGTACTACAACTAC 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22606889781
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5