BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50090.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474143 jgi|Araly1|474143|fgenesh2_kg.1__4097__AT1G50090.1 1759 0.0
Ahg923447 jgi|Araly1|923447|scaffold_104728.1 1554 0.0
Ahg474144 jgi|Araly1|474144|fgenesh2_kg.1__4098__AT1G50110.1 1190 0.0
> Ahg474143 jgi|Araly1|474143|fgenesh2_kg.1__4097__AT1G50090.1
Length=1113
Score = 1759 bits (952), Expect = 0.0
Identities = 1052/1101 (96%), Gaps = 4/1101 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTTCTGTGCACCCTTCTTCATCACCTCTTTTTACAAGTAAAGCCGATGAAAAG 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTCCTTCTGTGCACCCTTCTTCATCACCTCTTCTTACAAGTAAAGCCGATGAAAAG 60
Query 61 TATGCGAATGTAAAATGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTAT 120
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TATGCGAATGTAAAATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTAT 120
Query 121 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAACAGGAGAGATTGTTCCTTATGGGGAT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAAAAGGAGAGATTGTTCCTTATGGGGAT 180
Query 181 ATTTCTATAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTC 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTCAATAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTC 240
Query 241 AAGGCTTACAGGACAGAAGACGGTCGGATCACACTCTTCCGACCTGACCAAAACGCTATT 300
|||||||| |||||||||||| | ||||||||||||||||| |||||||||||| || ||
Sbjct 241 AAGGCTTATAGGACAGAAGACAGACGGATCACACTCTTCCGGCCTGACCAAAACACTCTT 300
Query 301 CGTATGCAAACAGGTGCAGATAGGCTTTGTATGACACCTCCTTCCCCGGAGCAATTCGTT 360
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 301 CGTATGCAAACAGGTGCAGATAGGCTTTGTATGATACCTCCTTCCCCGGAACAATTCGTT 360
Query 361 GAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAGGA 420
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 361 GAAGCAGTTAAGCAAACTGTGCTTGCCAACAACACATGGGTACCTCCTCCAGGTAAAGGA 420
Query 421 GCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAGCT 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAATAGCTTCAGCT 480
Query 481 CCTGAATATACGTTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCTCA 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CCTGAATATACGTTCCTCATTTACACATCTCCCGTAGGAAATTATCACAAGGCAAGCTCA 540
Query 541 GGCTTGAACCTCAAAGTTGATCATAACCATCGCCGAGCCCACTTCGGTGGAACAGGGGGT 600
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 541 GGCTTGAACCTCAAAGTTGATCATAACCATCGCCGAGCCCACTTTGGTGGAACAGGTGGT 600
Query 601 GTGAAGAGCTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCTTCG 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 601 GTGAAGAGCTGCACAAATTATTCTCCAGTTGTGAAATCGTTGATCGAAGCAAAGTCATCG 660
Query 661 GGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCT 720
Query 721 ACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGAACC 780
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 721 ACTTGTAACATCTTCATTCTAAAGGTAAACATTGTATCCACTCCACCAACTTCAGGAACC 780
Query 781 ATTTTACCAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTATGAG 840
||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||| ||
Sbjct 781 ATTTTACCAGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTACCAG 840
Query 841 GTTCAAGAACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGCACG 900
||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 841 GTTCAAGAACGCGATGTTTCTGTGGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGCACT 900
Query 901 GGGACGGCAGTGGTCATTAAAGCTGTTGAAACCGTGACATT-CCATGACAAAAGGGTAAA 959
||||| ||| ||||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 901 GGGACAGCAATGGTCGTTAAAGCTGTTGAAACCGTGAC-TTACCATGACAAAAGGGTAAA 959
Query 960 ATATAGAACAGGAGAAGAAGCATTCTCTACGAAGCTTCACTTGATATTAACTAATATTCA 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 960 ATATAGAACAGGAGAAGAAGCATTGTCTACGAAGCTTCACTTGATATTAACCAATATTCA 1019
Query 1020 AATGGGAGTTGTCGAAGATAAGAAGGGTTGGAT-GATGGAGATCGATCATTTGGTTGGAA 1078
||||||||||||||||||||||||||||||||| | |||| ||||||||||| || ||
Sbjct 1020 AATGGGAGTTGTCGAAGATAAGAAGGGTTGGATTG-TGGAAATCGATCATTTTACTGTAA 1078
Query 1079 CAGATTCGTTTCCTGATGAAA 1099
|||||||||||||||||||||
Sbjct 1079 CAGATTCGTTTCCTGATGAAA 1099
> Ahg923447 jgi|Araly1|923447|scaffold_104728.1
Length=1108
Score = 1554 bits (841), Expect = 0.0
Identities = 990/1062 (93%), Gaps = 10/1062 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCTTCTGTGCACCCTTCTTCATCACCTCTTTTTACAAGTAAAGCCGATGAAAAG 60
||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 21 ATGGCTCTTTCTGTGCTCCTTTCTTCATCACCTCTTCTTACAAGTAAAGCCGATGAAAAG 80
Query 61 TATGCGAATGTAAAATGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTAT 120
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 81 TATGCGAATGTAAAATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTAT 140
Query 121 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAACAGGAGAGATTGTTCCTTATGGGGAT 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 141 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAAAAGGAGAGATTGTTCCTTATGGAGAT 200
Query 181 ATTTCTA-TAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCT 239
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTTT-TAATAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCT 259
Query 240 CAAGGCTTACAGGACAGAAGACGGTCGGATCACACTCTTCCGACCTGACCAAAACGCTAT 299
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 260 CAAGGCTTATAGGACAGAAGACGGACGGATCACACTCTTCCGGCCTGACCAAAACGCTCT 319
Query 300 TCGTATGCAAACAGGTGCAGATAGG-CTTTGTATGACACCTCCTTCCCCGGAGCAATTCG 358
|||||||||||||||||| |||||| ||| |||||||||||||||| | ||| |||||||
Sbjct 320 TCGTATGCAAACAGGTGCGGATAGGACTT-GTATGACACCTCCTTCTCTGGACCAATTCG 378
Query 359 TTGAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAG 418
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 379 TCGAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTTCCTCCTCCGGGTAAAG 438
Query 419 GAGCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 439 GAGCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTCGCTTCAG 498
Query 479 CTCCTGAATATACGTTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCT 538
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 499 CACCTGAATATACGTTCCTCATTTACACATCTCCCGTAGGAAATTACCACAAGGCAAGTT 558
Query 539 CAGGCTTGAACCTCAAAGTTGATCATAACCATCGCCGAGCCCACT-TCGGTGGAACAGGG 597
||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 559 CAGGCTTGAACCTCATAGTTGATCATAAGCATCGCCGAGCCCACTCT-GGTGGAACAGGG 617
Query 598 GGTGTGAAGAGCTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCT 657
|||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 618 GGTGTGAAAAGCTGCACAAACTATTCTCCAGTTTTGAAATCGTTGATCGAAGCAAAGTCA 677
Query 658 TCGGGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTT 717
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 678 TCTGGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGCAAAAACATTGAAGAGGTT 737
Query 718 TCTACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGA 777
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 738 TCTACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCACCAACTTCAGGA 797
Query 778 ACCATTTTACCAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTAT 837
|||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||
Sbjct 798 ACCATTTTACCAGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTAC 857
Query 838 GAGGTTCAAGAACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGC 897
||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||| |||
Sbjct 858 CAGGTTCAAGAACGCGATGTTTCTGTCGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGC 917
Query 898 ACGGGGACGGCAGTGGTCATTAAAGCTGTTGAAACCGTGACATTCCATGACAAAAGGGTA 957
|| ||||| ||| ||||| | |||||||||||||||||||| |||||||||||| | ||
Sbjct 918 ACTGGGACCGCAATGGTCGTCAAAGCTGTTGAAACCGTGACCCTCCATGACAAAAAGATA 977
Query 958 AAATATA-GAACAGGAGAAGAAG-CATTCTCTACGAAGCTTCACTTGATATTAACTAATA 1015
||||| | || |||| ||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 978 AAATACAAGA-CAGGGGAA-AAGGCATTGTCTACGAAGCTTCACTTGATATTAACTAATA 1035
Query 1016 TTCAAATGGGAGTTGTCGAAGATAAGAAGGGTTGGATGATGG 1057
|||||||||||||||| |||||||| |||||||||||| |||
Sbjct 1036 TTCAAATGGGAGTTGTGGAAGATAAAAAGGGTTGGATGGTGG 1077
> Ahg474144 jgi|Araly1|474144|fgenesh2_kg.1__4098__AT1G50110.1
Length=1169
Score = 1190 bits (644), Expect = 0.0
Identities = 925/1060 (87%), Gaps = 21/1060 (2%)
Strand=Plus/Plus
Query 19 CCTTCTTCATCACCTCTT--T-TTACAAGTAAAGCCGATGAAAAGTATGCGAATGTAAAA 75
|||||||||||||||||| | ||| ||| |||| |||||||| ||||||||||| |||
Sbjct 25 CCTTCTTCATCACCTCTTCGTACTACTAGTGAAGCAGATGAAAAATATGCGAATGTGAAA 84
Query 76 TGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAATGCAAA 135
||||| ||||| |||||||| ||| ||||| ||||||||||||||| || |||||||||
Sbjct 85 TGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAATGCAAA 144
Query 136 CAAGGAGAGAGCTTTTCAACA-GGAGAGATTGTTCCTTATGGGGATATTTCTATAAGCCC 194
|||||||||||||||||| || ||| |||||||||||||||| |||||||| || |||||
Sbjct 145 CAAGGAGAGAGCTTTTCA-CAAGGAAAGATTGTTCCTTATGGCGATATTTCAATTAGCCC 203
Query 195 TTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTACAGGAC 254
|||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 204 TTGTTCTCCGATTCTCAATTATGGTCAGGGACTATTTGAAGGTCTCAAAGCTTACAGGAC 263
Query 255 AGAAGACGGTCGGATCAC-ACTCTTCCGACCTGACCAAAACGCTATTCGTATGCAAACAG 313
|||||||| ||||| | | | ||||| ||||||||||||||| ||||||||||||| |
Sbjct 264 AGAAGACGACCGGATTATTATT-TTCCGGCCTGACCAAAACGCTCTTCGTATGCAAACTG 322
Query 314 GTGCAGATAGGCTTTGTATGACACCTCCTTCCCCGGAGCAATTCGTTGAAGCAGTTAAGC 373
|||| || ||||||||||||||||||||||| | |||||| || || || ||||||||||
Sbjct 323 GTGCGGAGAGGCTTTGTATGACACCTCCTTCTCTGGAGCATTTTGTCGAGGCAGTTAAGC 382
Query 374 AAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAGGAGCTTTGTATATTA 433
||||||||||||| ||||| |||||||| ||||||||||| |||||| |||||||||| |
Sbjct 383 AAACTGTGCTTGCTAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTTTGTATATAA 442
Query 434 GGCCTCTACT-CATAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAGCTCCTGAATATACG 492
||||||| || | |||| | ||||| | ||||||||||||| |||| |||||||| ||
Sbjct 443 GGCCTCTGCTAC-TAGGGAGTGGTGTTACCCTTGGAGTAGCTCCAGCACCTGAATACACA 501
Query 493 TTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCTCAGGCTTGAACCTC 552
|| ||||| || |||||||||| ||| |||| || |||| |||||||||||||||||||
Sbjct 502 TTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAACCTC 561
Query 553 AAAGTTGATCATAA--CCATCGCCGAGCCCACTTC-GGTGGAACAGGG-GGTGTGAAGAG 608
|||||||||||||| || | ||||||||| ||| |||||||| ||| ||||| |||||
Sbjct 562 AAAGTTGATCATAAGTCC--CACCGAGCCCA-TTCAGGTGGAAC-GGGTGGTGTCAAGAG 617
Query 609 CTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCTTCGGGTTTCTC 668
|||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||||||||
Sbjct 618 CTGCACAAATTATTCTCCCGTTGTGAAATCGTTGCTTGAAGCAAAGTCAGCGGGTTTCTC 677
Query 669 TGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCTACTTGTAA 728
|||||||||||| ||||| ||||||||||||| ||||||||||||| || || |||||||
Sbjct 678 TGATGTCTTGTTTCTGGACGCGGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAA 737
Query 729 CATCTTCATTCT-AAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGAACCATTTTAC 787
|||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 738 CATCTTCATTCTCAAAGG-AAACATTGTGTCCACTCCACCAACTTCAGGAACCATTTTAC 796
Query 788 CAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTATGAGGTTCAAG 847
| ||| |||| ||||| |||||| | |||||||| ||||| |||||||| ||||| |||
Sbjct 797 CTGGAGTCACGAGGAAAAGCATAAGCGAGCTAGCTCGTGATATTGGCTACCAGGTTGAAG 856
Query 848 AACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGCACGGGGACGG 907
|||||||| ||||||||||||||||| |||||||||| |||||||| ||||| ||||| |
Sbjct 857 AACGTGATGTTTCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTG 916
Query 908 CAGTGGTCATTAAAGCTGTTGAAACCGTGACATTCCATGACAA-AAGGGTAAAATATAGA 966
|||||||| |||||||||||||||| ||||| ||||||||||| |||| ||||||| ||
Sbjct 917 CAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAGAAGG-TAAAATACAGG 975
Query 967 ACAGGAGAAGAAGCATTCTCTACGAAGCTTCACTTGATATTAACTAATATTCAAATGGGA 1026
|||||||||| ||||| |||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 976 ACAGGAGAAGCGGCATTGTCTACGAAGCTTCACTCGATGTTAACCAATATTCAGATGGGG 1035
Query 1027 GTTGTCGAAGATAAGAAGGGTTGGATGATGGAGATCGATC 1066
||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 1036 GTTGTTGAAGATAAGAAAGGTTGGATGGTGGATATCGATC 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5