BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50110.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474144 jgi|Araly1|474144|fgenesh2_kg.1__4098__AT1G50110.1 1746 0.0
Ahg474143 jgi|Araly1|474143|fgenesh2_kg.1__4097__AT1G50090.1 1223 0.0
Ahg923447 jgi|Araly1|923447|scaffold_104728.1 1219 0.0
> Ahg474144 jgi|Araly1|474144|fgenesh2_kg.1__4098__AT1G50110.1
Length=1169
Score = 1746 bits (945), Expect = 0.0
Identities = 1057/1112 (95%), Gaps = 4/1112 (0%)
Strand=Plus/Plus
Query 56 ATGGCTCCTTCTTCATCACCTCTTCGTACTACAAGTGAAACAGATGAAAAATATGCGAAT 115
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 19 ATGGCTCCTTCTTCATCACCTCTTCGTACTACTAGTGAAGCAGATGAAAAATATGCGAAT 78
Query 116 GTCAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAA 175
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GTGAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAA 138
Query 176 TGCAGACAAGGAGAGAGCTTTACACAAGGGAAGATTGTTCCTTATGGCGACATTTCAATT 235
|||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 139 TGCAAACAAGGAGAGAGCTTTTCACAAGGAAAGATTGTTCCTTATGGCGATATTTCAATT 198
Query 236 AGCCCTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTAC 295
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 199 AGCCCTTGTTCTCCGATTCTCAATTATGGTCAGGGACTATTTGAAGGTCTCAAAGCTTAC 258
Query 296 AGAACAGAAGACGACCGGATTAGGATTTTCCGGCCTGACCAAAACGCTCTTCGCATGCAA 355
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 259 AGGACAGAAGACGACCGGATTATTATTTTCCGGCCTGACCAAAACGCTCTTCGTATGCAA 318
Query 356 ACTGGTGCGGAGAGGCTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCAGTT 415
||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||
Sbjct 319 ACTGGTGCGGAGAGGCTTTGTATGACACCTCCTTCTCTGGAGCATTTTGTCGAGGCAGTT 378
Query 416 AAGCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTGTAT 475
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 379 AAGCAAACTGTGCTTGCTAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTTTGTAT 438
Query 476 ATAAGGCCTCTGCTACTAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGAATAC 535
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 439 ATAAGGCCTCTGCTACTAGGGAGTGGTGTTACCCTTGGAGTAGCTCCAGCACCTGAATAC 498
Query 536 ACTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAAC 595
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 ACATTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAAC 558
Query 596 CTCAAAGTTGATCATAAGTATCACCGAGCCCATTCAGGTGGAACGGGGGGTGTCAAGAGC 655
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 559 CTCAAAGTTGATCATAAGTCCCACCGAGCCCATTCAGGTGGAACGGGTGGTGTCAAGAGC 618
Query 656 TGCACAAACTATTCTCCAGTTGTGAAATCGTTACTCGAAGCAAAGTCAGCGGGTTTCTCT 715
|||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 619 TGCACAAATTATTCTCCCGTTGTGAAATCGTTGCTTGAAGCAAAGTCAGCGGGTTTCTCT 678
Query 716 GATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAAC 775
|||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 679 GATGTCTTGTTTCTGGACGCGGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAAC 738
Query 776 ATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTTTACCT 835
||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 739 ATCTTCATTCTCAAAGGAAACATTGTGTCCACTCCACCAACTTCAGGAACCATTTTACCT 798
Query 836 GGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGTCGAAGAA 895
||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||
Sbjct 799 GGAGTCACGAGGAAAAGCATAAGCGAGCTAGCTCGTGATATTGGCTACCAGGTTGAAGAA 858
Query 896 CGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTGCA 955
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CGTGATGTTTCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTGCA 918
Query 956 GTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAAAAGGTAAAATACAGGACA 1015
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 GTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAGAAGGTAAAATACAGGACA 978
Query 1016 GGAGAAGCAGCATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGATGGGAGTT 1075
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 979 GGAGAAGCGGCATTGTCTACGAAGCTTCACTCGATGTTAACCAATATTCAGATGGGGGTT 1038
Query 1076 GTTGAAGATAAGAAAGGTTGGATGGTGGACATTGATC-CTTGTCAAGGTTGA-AAGAAGA 1133
||||||||||||||||||||||||||||| || |||| || ||||||||||| || ||||
Sbjct 1039 GTTGAAGATAAGAAAGGTTGGATGGTGGATATCGATCGCT-GTCAAGGTTGAGAA-AAGA 1096
Query 1134 AGTTTAGAAAGCTGATGATTCTATGTACTCAA 1165
||||||||||| ||||||| |||| |||||||
Sbjct 1097 AGTTTAGAAAGTTGATGATCCTATTTACTCAA 1128
> Ahg474143 jgi|Araly1|474143|fgenesh2_kg.1__4097__AT1G50090.1
Length=1113
Score = 1223 bits (662), Expect = 0.0
Identities = 931/1060 (88%), Gaps = 21/1060 (2%)
Strand=Plus/Plus
Query 62 CCTTCTTCATCACCTCTTCGTACTACAAGTGAAA-CAGATGAAAAATATGCGAATGTCAA 120
||||||||||||||||||| | ||||||| ||| | |||||||| ||||||||||| ||
Sbjct 19 CCTTCTTCATCACCTCTTC-T--TACAAGT-AAAGCCGATGAAAAGTATGCGAATGTAAA 74
Query 121 ATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAATGCAG 180
|||||| ||||| |||||||| ||| ||||| ||||||||||||||| || |||||||
Sbjct 75 ATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAATGCAA 134
Query 181 ACAAGGAGAGAGCTTTACACAAGGGA-AGATTGTTCCTTATGGCGACATTTCAATTAGCC 239
|||||||||||||||| || || ||| |||||||||||||||| || |||||||| ||||
Sbjct 135 ACAAGGAGAGAGCTTTTCA-AAAGGAGAGATTGTTCCTTATGGGGATATTTCAATAAGCC 193
Query 240 CTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTACAGAA 299
||||| || |||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 194 CTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTATAGGA 253
Query 300 CAGAAGAC-GACCGGATTAGGA-TTTTCCGGCCTGACCAAAACGCTCTTCGCATGCAAAC 357
|||||||| || ||||| | | | |||||||||||||||||| ||||||| ||||||||
Sbjct 254 CAGAAGACAGA-CGGATCA-CACTCTTCCGGCCTGACCAAAACACTCTTCGTATGCAAAC 311
Query 358 TGGTGCGGAGAGGCTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCAGTTAA 417
||||| || ||||||||||||| ||||||| | | |||||||| || || ||||||||
Sbjct 312 AGGTGCAGATAGGCTTTGTATGATACCTCCTTCCCCGGAACAATTCGTTGAAGCAGTTAA 371
Query 418 GCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTGTATAT 477
||||||||||||||||||||| | |||||| |||||||| ||||||||| || |||||||
Sbjct 372 GCAAACTGTGCTTGCCAACAACACATGGGTACCTCCTCCAGGTAAAGGAGCTTTGTATAT 431
Query 478 AAGGCCTCTGCT-ACTAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGAATACA 536
|||||||| || | |||| | ||||||| ||||||| ||||| |||| |||||||| |
Sbjct 432 TAGGCCTCTACTCA-TAGGTACTGGTGCTGTCCTTGGAATAGCTTCAGCTCCTGAATATA 490
Query 537 CTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAACC 596
| || ||||| || |||||||||||||| |||| || |||| |||||||||||||||||
Sbjct 491 CGTTCCTCATTTACACATCTCCCGTAGGAAATTATCACAAGGCAAGCTCAGGCTTGAACC 550
Query 597 TCAAAGTTGATCATAAGTATCACCGAGCCCA-TTCAGGTGGAACGGGGGGTGTCAAGAGC 655
|||||||||||||||| ||| ||||||||| || |||||||| || ||||| ||||||
Sbjct 551 TCAAAGTTGATCATAACCATCGCCGAGCCCACTTT-GGTGGAACAGGTGGTGTGAAGAGC 609
Query 656 TGCACAAACTATTCTCCAGTTGTGAAATCGTT-ACTCGAAGCAAAGTCAGCGGGTTTCTC 714
|||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 610 TGCACAAATTATTCTCCAGTTGTGAAATCGTTGA-TCGAAGCAAAGTCATCGGGTTTCTC 668
Query 715 TGATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAA 774
||||||| ||||||||||||| |||||||||| ||||||||||||| || || |||||||
Sbjct 669 TGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCTACTTGTAA 728
Query 775 CATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTTTACC 834
|||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 729 CATCTTCATTCTAAAGGTAAACATTGTATCCACTCCACCAACTTCAGGAACCATTTTACC 788
Query 835 TGGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGT-CGAAG 893
||| |||| |||||||||||||||||||| |||| |||||||||||||||||| | |||
Sbjct 789 AGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTACCAGGTTC-AAG 847
Query 894 AACGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTG 953
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 848 AACGCGATGTTTCTGTGGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGCACTGGGACAG 907
Query 954 CAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTT-CCATGACAAAAAGGTAAAATACAGG 1012
|| |||||||||||||||||||||| ||||| || ||||||||||| ||||||||| ||
Sbjct 908 CAATGGTCGTTAAAGCTGTTGAAACCGTGAC-TTACCATGACAAAAGGGTAAAATATAGA 966
Query 1013 ACAGGAGAAGCAGCATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGATGGGA 1072
|||||||||| ||||||||||||||||||||||| ||| || ||||||||||| ||||||
Sbjct 967 ACAGGAGAAGAAGCATTGTCTACGAAGCTTCACTTGATATTAACCAATATTCAAATGGGA 1026
Query 1073 GTTGTTGAAGATAAGAAAGGTTGGATGGTGGACATTGATC 1112
||||| ||||||||||| |||||||| ||||| || ||||
Sbjct 1027 GTTGTCGAAGATAAGAAGGGTTGGATTGTGGAAATCGATC 1066
> Ahg923447 jgi|Araly1|923447|scaffold_104728.1
Length=1108
Score = 1219 bits (660), Expect = 0.0
Identities = 928/1056 (88%), Gaps = 24/1056 (2%)
Strand=Plus/Plus
Query 59 GCTCC-TTCTTCATCACCTCTTCGTACTACAAGTGAAA-CAGATGAAAAATATGCGAATG 116
||||| ||||||||||||||||| | ||||||| ||| | |||||||| ||||||||||
Sbjct 35 GCTCCTTTCTTCATCACCTCTTC-T--TACAAGT-AAAGCCGATGAAAAGTATGCGAATG 90
Query 117 TCAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAAT 176
| |||||||| ||||| |||||||| ||| ||||| ||||||||||||||| || ||||
Sbjct 91 TAAAATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAAT 150
Query 177 GCAGACAAGGAGAGAGCTTTACACAAGGGA-AGATTGTTCCTTATGGCGACATTTCAATT 235
||| |||||||||||||||| || || ||| |||||||||||||||| || ||| |||
Sbjct 151 GCAAACAAGGAGAGAGCTTTTCA-AAAGGAGAGATTGTTCCTTATGGAGATTTTTTAATA 209
Query 236 AGCCCTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTAC 295
||||||||| || |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 210 AGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTAT 269
Query 296 AGAACAGAAGAC-GACCGGATTAGGA-TTTTCCGGCCTGACCAAAACGCTCTTCGCATGC 353
|| ||||||||| || ||||| | | | |||||||||||||||||||||||||| ||||
Sbjct 270 AGGACAGAAGACGGA-CGGATCA-CACTCTTCCGGCCTGACCAAAACGCTCTTCGTATGC 327
Query 354 AAACTGGTGCGGAGAGG-CTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCA 412
|||| |||||||| ||| | |||||||||||||||| |||| || ||||| ||||| |||
Sbjct 328 AAACAGGTGCGGATAGGAC-TTGTATGACACCTCCTTCTCTGGACCAATTCGTCGAAGCA 386
Query 413 GTTAAGCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTG 472
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 387 GTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTTCCTCCTCCGGGTAAAGGAGCTTTG 446
Query 473 TATATAAGGCCTCTGCT-ACTAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGA 531
||||| |||||||| || | |||| | ||||||| ||||||||| ||| ||||||||||
Sbjct 447 TATATTAGGCCTCTACTCA-TAGGTACTGGTGCTGTCCTTGGAGTCGCTTCAGCACCTGA 505
Query 532 ATACACTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTT 591
||| || || ||||| || |||||||||||||| ||||||| |||| ||| ||||||||
Sbjct 506 ATATACGTTCCTCATTTACACATCTCCCGTAGGAAATTACCACAAGGCAAGTTCAGGCTT 565
Query 592 GAACCTCAAAGTTGATCATAAGTATCACCGAGCCCATTCAGGTGGAACGGGGGGTGTCAA 651
|||||||| ||||||||||||| ||| ||||||||| || |||||||| |||||||| ||
Sbjct 566 GAACCTCATAGTTGATCATAAGCATCGCCGAGCCCACTCTGGTGGAACAGGGGGTGTGAA 625
Query 652 GAGCTGCACAAACTATTCTCCAGTTGTGAAATCGTT-ACTCGAAGCAAAGTCAGCGGGTT 710
|||||||||||||||||||||||| |||||||||| | |||||||||||||| | ||||
Sbjct 626 AAGCTGCACAAACTATTCTCCAGTTTTGAAATCGTTGA-TCGAAGCAAAGTCATCTGGTT 684
Query 711 TCTCTGATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTT 770
||||||||||| ||||||||||||| |||||||| | |||||| |||||| || || |||
Sbjct 685 TCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGCAAAAACATTGAAGAGGTTTCTACTT 744
Query 771 GTAACATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTT 830
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 745 GTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCACCAACTTCAGGAACCATTT 804
Query 831 TACCTGGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGT-C 889
|||| ||| |||| |||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 805 TACCAGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTACCAGGTTC 864
Query 890 GAAGAACGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGG 949
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 865 -AAGAACGCGATGTTTCTGTCGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGCACTGGG 923
Query 950 ACTGCAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAAAAGGTAAAATAC 1009
|| ||| ||||||| |||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 924 ACCGCAATGGTCGTCAAAGCTGTTGAAACCGTGACCCTCCATGACAAAAAGATAAAATAC 983
Query 1010 AGGACAGGAGAAGCAG-CATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGAT 1068
| |||||| ||| || ||||||||||||||||||||| ||| || || |||||||| ||
Sbjct 984 AAGACAGGGGAAA-AGGCATTGTCTACGAAGCTTCACTTGATATTAACTAATATTCAAAT 1042
Query 1069 GGGAGTTGTTGAAGATAAGAAAGG-TTGGATGGTGG 1103
||||||||| |||||||| ||||| |||||||||||
Sbjct 1043 GGGAGTTGTGGAAGATAA-AAAGGGTTGGATGGTGG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5