BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50120.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923452 jgi|Araly1|923452|scaffold_104733.1 2643 0.0
> Ahg923452 jgi|Araly1|923452|scaffold_104733.1
Length=1625
Score = 2643 bits (1431), Expect = 0.0
Identities = 1573/1640 (96%), Gaps = 16/1640 (1%)
Strand=Plus/Plus
Query 454 GAAACACAGCCATTGAAGCGATGCTATCATCAAGGTTTTCCTTTTTGGGGATCGGCAGTT 513
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 1 GAAACACAGCCATTGAAGCGATGCTATCATCAAGGTTTTCTTTTTTGGGGATC-G--G-- 55
Query 514 CCAGTGAAGTCAATGACTCCGTGGGTGTTTCTGGAAGCAAGATCAAACCATCTCTAAGTG 573
||||| | | | || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 56 -CAGTG-A--C--T--CT--GTGGGTGTTTCTGGAAGCAAGATCAAACCATCTCTAACTG 105
Query 574 TTCAAACGGATAAAGATGTGTATAGGCCTGGAGATTCCATTTTTGTAACTATTGAGGTTG 633
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 106 TGCAAACGGATAAAGATGTCTACAGGCCTGGAGATTCCATTTTTGTAACTATTGAGGTTG 165
Query 634 CTAATTCTCATGACAACGCCTCTAATCCCTCCATTTTGGTTGAAAAGCTTAGTTTTGAGG 693
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GTAATTCTCACGAGAACGGGTCTAATCCCTCCATTTTGGTTGAAAAGCTTAGTTTTGAGG 225
Query 694 TTAAAGGTCTAGAGAAATTGGACATTCAGTGGTTTTCTACTCAAAAACCTTCACCAGGAA 753
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 226 TTAAAGGACTAGAGAAATTGGACATTCAGTGGTTTTCTACTCAAAAGCCATCACCAGGAA 285
Query 754 GCAAAGGACGAAGAGGTGAACACATCTTCCTAGACAGTTCAACACCATCTTTGATTTCAA 813
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 286 GCAAAGCACGAAGAGGTGAACATATCTTCCTAGACAGTTCAACACCATCTTTGATTTCAA 345
Query 814 ATCAAATCCTATCCCCTGGTGCTAAGATGACATTAATGGTTCGAGCTATACTCCCACAGA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ATCAAATCCTATCCCCTGGTGCTAAGATGACATTAATGGTTCGAGCTATACTCCCACAGA 405
Query 874 TTATACCACCTTCTTATAAAGGTGCTACTTTACGTTACCTTTACTACATTAAGAGCACAT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTATACCACCTTCTTATAAAGGTGCTACTTTACGTTACCTTTACTACATTAAGAGCACAT 465
Query 934 TATGCGGAAGATGGATGGCATTAGAAAACAGTCAATTTTACAAAGACTCAACACAAGATT 993
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 466 TATGCGGAAGATGGATGGCGCTAGAAAACAGTCAGTTTTACAAAGACTCAACAAAAGATT 525
Query 994 TCATTGAAGTGGAGACTCGAATACCATTACAAGTATGGGTAATTCAGAAGAACAATGGGC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCATTGAAGTGGAGACTCGAATACCATTACAAGTATGGGTAATTCAGAAGAACAATGGGC 585
Query 1054 TGCTATTAGAGGAAGATCAAATCGATGGTATTGTTCCAACCAGTACCATTCAGACAGAAA 1113
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 586 TGCTATTAGAGGAAGATCAAACCGATGGGATTGTTCCAACCAGTACCATTCAGACAGACA 645
Query 1114 TATATTGGAAAGAGATGGATGGGGACTCAGAATGGACTAGAGCAAATGACGCATATGATA 1173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 TATATTGGAAAGAGATGGATGGAGACTCAGAATGGACTAGAGCAAATGACGCATATGATA 705
Query 1174 GTGGTGAGGATGGATATGACAGTTCACGTGACGAGATCTCATCTGTTTCTTCCTATCCCA 1233
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 706 GTGGTGAGGATGGATATGACAGTTCACGTGACGAGATCTCGTCTGTTTCTTCCTATCCCA 765
Query 1234 ACAAAAGCAATTTAAACAGAACATTTGGCAGTTCATTGTCCTTGAATTCTGGACCGCGAT 1293
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 766 ACAAAAGCAATTTAAACAGAACGTTTGGCAGTTCATTGTCCTTGAATTCTGGACCGCGAT 825
Query 1294 TGTCAATGAAAGACACGTCATATGTTGAAGAACGTGTGGGATCATCTCCAAAGATGATGC 1353
| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 826 TATCAATGAAAGACACATCATATGTTGAAGAACGTGTTGGATCGTCTCCAAAGATGATGC 885
Query 1354 TTTCTCAGTTATCAGCTGCCGTGGTGTCTTATGATTCCGGAACTGATGTATCTTCCCCTC 1413
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 886 TTTCTCAGTTATCAGCTGCCGTGGTGTCTTATGATTCCGGAACCGATGTCTCTTCGCCTC 945
Query 1414 ATAAATCATCAAATTCTGTGGTCCCGAGCCAACAGCCCAAGCAAACAAATGGTGCAGGAG 1473
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 946 ATAAATCATCAAATTCTGTGGTCCCGAGCCAACAGCCTAAGCAAACAAATGGCGCAGGAG 1005
Query 1474 CATCTATGTCGCCTGGAGCAGGAGCAAGAGAACCAGTTCCATCAGAAGGATTTACAAGAG 1533
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1006 CATCTATGTCGCCTGAAGCAGGAGCAAAAGAACCAGTTCCATCAGAAGGATTTACAAGAG 1065
Query 1534 GAAGATCATACAACATTAGAATGGATGACCAAGTCCTTCTTAGGTTTTCCCCCAAGAATG 1593
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GAAGATCTTACAACATTAGAATGGATGACCAAGTCCTTCTTAGGTTTTCCCCCAAGAATG 1125
Query 1594 CCGATTCTACTTATTACTTCAGCGATACTATAGGTGGAACTCTTACATTCTTCCATGAAG 1653
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1126 CCGACTCTACTTATTACTTCAGCGATACTATAGGTGGAACTCTTACGTTCTTCCATGAAG 1185
Query 1654 AAGGAACCAGAAGATGCCTCGAGGTCTCGGTTACTCTAGAAACTTTAGAGACAATAAACA 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAGGAACCAGAAGATGCCTCGAGGTCTCGGTTACTCTAGAAACTTTAGAGACAATAAACA 1245
Query 1714 GGAGATTTGTTCATCCATCAAGGAGAAATTCTCCAACACTTACTAAGGTCCAAAGCGATC 1773
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1246 GGAGATTTGTTCATCCATCAAGGAGAAATTCTCCAACGCTTACTAAGGTCCAAAGCGATC 1305
Query 1774 ACCATGAGGTGGTGGCAGACCTTATTCAAACCAGCTTTCTATTTTCAATTCCGACGGATG 1833
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1306 ACCATGAGGTGGTGGCAGACCTTATTCAAACCAGCTTTCTATTTTCAATTCCCACGGATG 1365
Query 1834 GTCCAATGTCGTTTTCTACGCCCCGTGTTTCTGTGCAATGGATTCTTCGGTTTGAGTTCC 1893
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1366 GTCCAATGTCGTTTTCTACGCCCCATGTTTCTGTGCAATGGATTCTTCGGTTTGAGTTCC 1425
Query 1894 TAACTACTCCTAAGAGTGTGGACTTAAGCAGGTACGAACATCCATTGTTAGTACCGGAAA 1953
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TAACTACTCCAAAGAGTGTGGACTTAAGCAGGTACGAACATCCATTGTTAGTACCGGAAC 1485
Query 1954 GGGAAAAAAGCGAATGGGTTCTTCCGATTACTGTACATGCACCGCCGCCTCGGACATCAG 2013
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1486 GGGAAAAAAGCGAATGGGTTCTTCCGATTACTGTACATGCACCGCCGCCTCGAACATCAG 1545
Query 2014 GTGCTCAAAACCGTGGAGATAAGCTTTTTGGTTTGGAGCCGTCTTGGATTCGTAGCTAAA 2073
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1546 GTGCTCAAACCCGTGGAGATAAGTTTTTTGGTTTGGAGCCGTCTTGGATTCGTAGCTAAA 1605
Query 2074 TTT-GTTTTTGGTGAAAGAT 2092
| ||||||||||||||
Sbjct 1606 CCACGCTTTTGGTGAAAGAT 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5