BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50130.1
Length=2798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314419 jgi|Araly1|314419|fgenesh1_pm.C_scaffold_1003199 2477 0.0
Ahg471060 jgi|Araly1|471060|fgenesh2_kg.1__1014__AT1G09620.1 2183 0.0
Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904 505 8e-142
> Ahg314419 jgi|Araly1|314419|fgenesh1_pm.C_scaffold_1003199
Length=3186
Score = 2477 bits (1341), Expect = 0.0
Identities = 1548/1645 (94%), Gaps = 26/1645 (2%)
Strand=Plus/Plus
Query 1174 AACGTACGGCGAATCAGAATGGCGGAAAATGGCTGAAGAATGCTTATCAAAAATGAATCT 1233
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1545 AACGTACGGCGAAGCAGAATGGCGGAAAATGGCTGAGGAATGCTTATCAAAAATGAACCT 1604
Query 1234 CTACTCTGAGGAAACAAGGCATGGCTTTGAGCACACTTTGAGCTGGCTCATTCAGTGGGC 1293
||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1605 CTACTCTGAAGAAACAAGGCATGGCTTTGAGCACACTTTAAGCTGGCTCAATCAGTGGGC 1664
Query 1294 TTGCTCACGGTCTTTTGGTCTAGGAACTCGTATTCCTTGGGATAATGAACGGTTCCTTGT 1353
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1665 TTGCTCACGGTCTTTTGGTCTAGGAACTCGTATTCCTTGGG---ATGAACAGTTCCTTGT 1721
Query 1354 GGAATCCTTATCTGATTCATCTCTTTATATGGCCTATTATACAGTTGCCCATATCTTTCA 1413
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1722 GGAATCCTTATCTGATTCATCACTTTATATGGCCTACTATACAGTTGCCCATATCTTTCA 1781
Query 1414 CGACGGAGACATGTATAAAGGAAGCAAGTCTTTGATCCGTCCTCAGCAGATGAATGATGA 1473
|||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1782 CGACGGTGACATGTATAAAGGCAGCAAGTCGTTGATCCGTCCTGAGCAGATGAATGATGA 1841
Query 1474 AGTTTGGGAGTATCTCTTCTGTGATGGTCCGTATCCAAAATCAACTGATATTCCATCAGC 1533
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1842 AGTTTGGGAGTATCTCTTCTGTGATGGTCCGTATCCAAAATCATCTGATATTCCATCAGC 1901
Query 1534 TGTTTTAAGTAAGATGAAGCAGGAATTTGACTACTGGTACCCGCTAGATCTTCGAGTTTC 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TGTTTTAAGTAAGATGAAGCAGGAATTTGACTACTGGTACCCGCTAGATCTTCGAGTTTC 1961
Query 1594 CGGAAAGGATCTTATTCAGAATCATTTGACATTTTTCATCTATAACCACACTGCACTAAT 1653
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1962 AGGGAAGGATCTTATTCAGAATCATTTGACATTTTTCATCTACAACCACACTGCACTAAT 2021
Query 1654 GGAGAAG-CGTAACTGGCCACGGGGTATCAGATGTAATGG-CACATTATGCTCAATTCTG 1711
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2022 GGAG-AGTCGTAACTGGCCACGTGGTATCAGATGTAATGGTCACATTATGCTCAATTCTG 2080
Query 1712 AGAAAATGTCAAAGTCAACTGGAAATTTCAGAACCCTGCGCCAGGCTATCGAAGAATTCT 1771
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2081 AGAAAATGTCAAAGTCCACTGGAAATTTCAGAACCCTGCGCCAGGCTATCGAAGAGTTCT 2140
Query 1772 CTGCCACTGCTACAAGGTTTTCTTTGGCTGATGCTGGTGATGGCGTTGACGATGCAAATT 1831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2141 CTGCCACTGCTACAAGGTTTTCTTTGGCTGATGCTGGTGATGGTGTTGACGATGCAAATT 2200
Query 1832 TTGTATTTGAAACTGCAAATGCTGCAATTTTGCGGCTGGTGAAACAGCTCGAATGGATGG 1891
|||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 2201 TTGTATTTGAAACTGCAAATGCTGCAATTTTGCGGCTGATGACACAGTTCAAATGGATGG 2260
Query 1892 AAGAAAAACTGGCTGCTGAATCCTCTTTGAGAACGGGGCCTCCATCTACATATGCTGATA 1951
|||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 2261 AAGATGTTCTGGCTGCTGAATCCTCTTTGAGAACCGGACCTCCATCTACGTATGCTGATA 2320
Query 1952 AAGTGTTTGAGAATGACATTAACATTGCTATCAGATTGACTGAAAAAGCGTACAAAGAAT 2011
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 2321 AAGTGTTTGAGAATGACATGAAAATTGCTATCAGATTGACTGAAAAAGCTTACAAAGATT 2380
Query 2012 GTTTGTTTAGGGAGGCACTTAAGAATGGGGTTTACGACTTACAAGCTGCTCGAGATGAGT 2071
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2381 GTTTGTTTAGGGAGGCACTTAAGAATGGGTTTTACGACTTACAAGCTGCTCGAGATGAGT 2440
Query 2072 ATAGAAACTCTTGTGGCAGTGACGAAAATATGAACCATGACTTGATACTGAACTTCATGG 2131
||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2441 ATACACTCTCCTGTGGCAGTGACGGAAATATGAACCATGACTTGATACTGAACTTCATGG 2500
Query 2132 ATGTGCAAACACGCCTCATTGAACCAATCTGTCCCCAGTTTGCAGAATATGTATGGAGGA 2191
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||
Sbjct 2501 ATGTGCAAACACGCCTCATTGAACCAATATGTCCTCAGTTTGCAGAATATATATGGAGGA 2560
Query 2192 AACTTTTGAAGAAGGAAGGTTCTGTGGTAACAGCAGGCTGGCCTACATCAAATGAGCCAG 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561 AACTTTTGAAGAAGGAAGGTTCTGTGGTAACAGCAGGCTGGCCTACATCAAATGAGCCAG 2620
Query 2252 ATTTGGTTCTCAAGAGTGCTAACAAATATTTGCAAGATTCTATTGTCTTAATGAGAAAGC 2311
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2621 ATTTGGTTCTCAAGAGTGCTAACAAATATTTGCAAGATTCTATTGTCCTAATGAGAAAGC 2680
Query 2312 T-CT-----------T---AGGTTCCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAACAG 2356
| || | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2681 TTCTACCAAAACAGCTCTTAGGTTCCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAGCAG 2740
Query 2357 CAGCGCCAGCGGGAAAGTTAATAGGCCTAGTATATGTGAATGAGCAATTTGATTGATGGA 2416
||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2741 CAGTGCCAGCGGGAAAATTAAAAGGCCTAGTATATGTGAATGAGCAATTTGATGGATGGA 2800
Query 2417 GAGCTCACTGCCTCAAG-TTCCTGCAAAGCAAATTTGACCAGCAAACCTATCGTTTTGCC 2475
|||||||||||||| || ||| |||||||||||||| |||| ||||||| ||||||||||
Sbjct 2801 GAGCTCACTGCCTCGAGATTC-TGCAAAGCAAATTTAACCAACAAACCTGTCGTTTTGCC 2859
Query 2476 CCTGATGCAGAGATAATTGCAGAACTAAAG-GAGATATTACAGAAGGATGGACAAGCAGA 2534
||||||||||||||| |||||||||| | ||||||||||||||||| |||| ||||||
Sbjct 2860 CCTGATGCAGAGATACGGGCAGAACTAA-GTGAGATATTACAGAAGGAGGGACTAGCAGA 2918
Query 2535 AAACATTTACATGCCTTTCGTTAAATTCAAGAAGAAGGAGGCAATATCTATTGGCATTCA 2594
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2919 AAACGTTTACATGCCTTTCGTTAAATTCAAGAAGAACGAGGCAATATCTATTGGCACTCA 2978
Query 2595 GGCTCTAAATTTGAGGCTGCCTTTTGGAGAGATTGAAGTCCTTAAGAGTAACATGGACTT 2654
||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||
Sbjct 2979 GGCTCTAAATTTGAGGCTGCCTTTTGGAGAGATTGCAGTCCTTGAGAGTAATAAGGACTT 3038
Query 2655 GATCAAGCGGCAACTTGGTCTTGAAGAG-TTGAAGTATATTCTGCAAGTGACCCTGATGA 2713
||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 3039 GATCAAGCGGCAAGTTGGTCTTGAAGAGGTTGAAGTATATTCTGCAAGTAAGCCTGATGA 3098
Query 2714 TGTTTCAAAAGCTGGTCCACATGCTTCACTGCTGAAGAAGAATCCTCCATCTCCGGGCAA 2773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3099 TGTTTCAAAAGCTGGTCCACATGCTTCACTGCTGAAGAAGAATCCTCCATCTCCGGGCAA 3158
Query 2774 TCCAACCGCCATCTTTGTGACCAGG 2798
||||||||||||||||||| |||||
Sbjct 3159 TCCAACCGCCATCTTTGTGGCCAGG 3183
Score = 937 bits (507), Expect = 0.0
Identities = 626/681 (92%), Gaps = 18/681 (3%)
Strand=Plus/Plus
Query 494 TTGGTCTTACTGACAGTGAGATTGCAAGATTTCGGGATCCAGATGAATGGTTGTATTACT 553
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 461 TTGGTCTTACTGACAGTGAGATTGCAAGATTTCAAGATCCATATGAATGGTTGTATTACT 520
Query 554 TTCCCCCTTTGGCTGTTGAAGATCTCAAGGCATATGGATTGGGCTGTGACTGGAGACGGT 613
|||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 521 TTCCTCCTTTAGCTGTTGAAGATCTCAAGGCTTATGGATTGGGTTGTGATTGGAGACGCT 580
Query 614 CATTTGTGACTACTGATGTTAATCCTTTTTTCGATGCCTTTGTGAGGTGGCAGATGAGGA 673
|||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 581 CATTCGTGACTACTGATGTTAATCCCTTTTTCAATGCCTTTGTAAGGTGGCAGATGAGGA 640
Query 674 AGTTGAAAGCTCTGGGAAAGATTGTCAAAGACTGTAGGTACACAATATTCTCACCTCTAG 733
|||||||| || |||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 641 AGTTGAAATCTATGGGAAAGATTGTCAAAGACTGTAGGTATACAGTATTCTCACCTTTAG 700
Query 734 ATCGCCAGCCTTGTGCTGATCACGACCGTGCTACTGGTGAAGGTGTTCAGCCTCAGGAGT 793
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 701 ATGGTCAGCCTTGTGCTGATCACGACCGTGCTACTGGTGAAGGTGTTCAGCCTCAAGAGT 760
Query 794 ATACTCTCATAAAGATGGAAGTAGTGAAGCCATTTCCTCTGAAACTGAGTCCTTTGGAAG 853
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 761 ATACTCTCATAAAGATGGAAGTAGTGAAGCCATTTCCTCTGAAACTGGGTTCTTTGGAAG 820
Query 854 GAAAAAGAGTGTTTTTGGCTGCAGCTACTTTGAGGCCTGAGACCATGTATGGACAAACAA 913
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 821 GAAAGAGAGTGTTTTTGGCTGCAGCTACGCTGAGGCCTGAGACCATGTATGGACAAACAA 880
Query 914 ACGCTTGGGTACTACCTGATGGGAAATATGGAGCTTATGAAATCAGTGAAACTGATGTCT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 ACGCTTGGGTACTACCTGATGGGAAATATGGAGCTTATGAAATCAGTGAAACTGAT---- 936
Query 974 TCATCCTTACTGAGAGATCTGCACTCAACCGTGCCTACCAGAACTTCTCAAAGAACCCTA 1033
| || ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 937 --A--------GA----TCTGCACTCAACCTTGCCTACCAGAACTTCTCAAAGATCCCTC 982
Query 1034 AGAAACCATCTTGCTTGGTCGAGTTGACCGGTTATGATCTGATTGGACTCCCTCTGAAGT 1093
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 983 AGAAGCCATCCTGCTTGGTCGAGTTGACCGGGTATGATCTGATTGGACTCCCTCTGAGGT 1042
Query 1094 CTCCTCTGTCAGTGAACGAGATCATCTATGCTCTGCCCATGTCAACGATTCTAACCAACA 1153
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1043 CTCCTCTGTCAGTGAATGAGATCATCTATGCTCTGCCCATGTCAACGATTCTGACCAACA 1102
Query 1154 AAGGTACTGGTATCGTCACCA 1174
||||||| ||||| |||||||
Sbjct 1103 AAGGTACCGGTATTGTCACCA 1123
Score = 710 bits (384), Expect = 0.0
Identities = 438/464 (94%), Gaps = 3/464 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCTGAATCCAATAGCTTTGCGAAAAGAGATCGTCTTCTCGAGATTGAGGTAGCA 60
||||||||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct 1 ATGGCATCTGAATCCAATAGCTTCAAGAAAAGAGATCGTCTACTTGAAATTGAGGTAGCG 60
Query 61 GTTCGAAAGTGGTGGGAGGATGAGGATGTTTTCAGGGCTGAATCTCGTGATCATCTTCCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GTTCGAAAGTGGTGGGAGGATGAGGATGTTTTCAGGGCTGAATCTCGTGATCATATTCCA 120
Query 121 AAGCCAGGAGAAAAGTTCTTCTCCACTTTCCCTTTTCCCTATATGAATGGTTATCTACAC 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 AAGCCAGGAGAAAAGTTCTTCTCCACTTTTCCTTTTCCCTATATGAATGGTTATCTTCAC 180
Query 181 ATTGGGCATGCTTTCTCACTCTCCAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGA 240
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATTGGGCATGCCTTCTCCCTCTCCAAGGTTGATTTTGCTTCTGCTTACCATAGACTTAGA 240
Query 241 GGTGCCAATGTGCTTCTTCCTTTTGGTTTCCACTGTACTGGTATGCCTATTAAGGCTTCC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GGTGCCAATGTGCTTCTTCCTTTTGGTTTCCACTGTACTGGTATGCCGATTAAGGCTTCC 300
Query 301 GCGGATAAGCTTTCTCGTGAGATCCTACAGTTTGGAGACCCTCCTGTCTTCCCTGCTCAA 360
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 301 GCGGATAAGCTTTCTCGTGAGATCCAACAGTTTGGAAACCCTCCTGTCTTCCCTGCTCAA 360
Query 361 GATAACCTAGCTCCTCAAGTTCACGAGGAGGGCAGTGATACACCGG---CTTTAACGGGT 417
||||||| ||||||||||||||| |||||| | ||||||||||||| ||||| |||||
Sbjct 361 GATAACCAAGCTCCTCAAGTTCAGGAGGAGAGTAGTGATACACCGGTGGCTTTACCGGGT 420
Query 418 CAGTTCAAGGGAAAGAAGTCTAAGGTGGCTGCGAAATCTGGTGG 461
|||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 421 CAGTTCAAGGGAAAGAAGTCTAAGGTGGCTGCAAAATCTGTTGG 464
> Ahg471060 jgi|Araly1|471060|fgenesh2_kg.1__1014__AT1G09620.1
Length=3685
Score = 2183 bits (1182), Expect = 0.0
Identities = 1513/1665 (91%), Gaps = 53/1665 (3%)
Strand=Plus/Plus
Query 1174 AACGTACGGCGAATCAGAATGGCGGAAAATGGCTGAAGAATGCTTATCAAAAATGAATCT 1233
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1746 AACGTACGGCGAATCAGAATGGAGGAAAATGGCTGAGGAATGCTTATCAAAAATGAATCT 1805
Query 1234 CTACTCTGAGGAAACAAGGCATGGCTTTGAGCACACTTTGAGCTGGCTCATTCAGTGGGC 1293
||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1806 CTATTCTGAAGAAACAAGGCATGGCTTTGAGCACACTTTGAGCTGGCTCAATCAGTGGGC 1865
Query 1294 TTGCTCACGGTCTTTTGGTCTAGGAACTCGTATTCCTTGGGATAATGAACGGTTCCTTGT 1353
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 1866 TTGCTCACGGTCTTTTGGTCTAGGAACTCGTATTCCCTGGG---ATGAACAGTTCCTTGT 1922
Query 1354 GGAATCCTTATCTGATTCATCTCTTTATATGGCCTATTATACAGTTGCCCATATCTTTCA 1413
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1923 GGAATCCTTATCTGATTCATCTCTTTATATGGCCTATTACACAGTTGCCCATATCTTTCA 1982
Query 1414 CGACGGAGACATGTATAAAGGAAGCAAGTCTTTGATCCGTCCTCAGCAGATGAATGATGA 1473
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1983 CGATGGAGACATGTATAAAGGTAGCAAGTCTTTGATCCGCCCTCAGCAGATGAATGATGA 2042
Query 1474 AGTTTGGGAGTATCTCTTCTGTGATGGTCCGTATCCAAAATCAACTGATATTCCATCAGC 1533
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 2043 AGTTTGGGAGTATCTCTTCTGTGATGGCCCGTACCCAAAATCATCTGATATTCCATCAGC 2102
Query 1534 TGTTTTAAGTAAGATGAAGCAGGAATTTGACTACTGGTACCCGCTAGATCTTCGAGTTTC 1593
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2103 TGTCTTAAGCAAGATGAAGCAGGAATTTGATTACTGGTACCCGCTAGATCTTCGAGTTTC 2162
Query 1594 CGGAAAGGATCTTATTCAGAATCATTTGACATTTTTCATCTATAACCACACTGCACTAAT 1653
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2163 AGGAAAGGATCTTATTCAGAATCATTTGACATTTTTCATCTACAACCACACTGCACTAAT 2222
Query 1654 GGAGAAGCGTAACTGGCCACGGGGTATCAGATGTAATGG-CACATTATGCTCAATTCTGA 1712
|| ||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct 2223 GGCGAATCGTAACTGGCCACGTGGCATCAGATGTAATGGTCACATAATGCTGAATTCTGA 2282
Query 1713 GAAA-ATGTCAAAGTCAACTGGAAATTTCAGAACCCTGCGCCAGGCTATCGAAGAATTCT 1771
||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2283 -AAAGATGTCAAAGTCAACCGGAAATTTCAGAACCTTGCGCCAGGCTATTGAAGAATTCT 2341
Query 1772 CTGCCACTGCTACAAGGTTTTCTTTGGCTGATGCTGGTGATGGCGTTGACGATGCAAATT 1831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2342 CTGCCACTGCTACAAGGTTTTCTTTGGCTGATGCTGGTGATGGTGTTGACGATGCTAATT 2401
Query 1832 TTGTATTTGAAACTGCAAATGCTGCAATTTTGCGGCTGGTGAAACAGCTCGA-ATGGATG 1890
|||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||
Sbjct 2402 TTGTATTTGAAACTGCAAATGCTGCAATTTTGCGGCTGACAAAAGAGCTC-ACATGGATG 2460
Query 1891 GAAGAAAAACTGGCTGCTGAATCCTCTTTGAGAACGGGGCCTCCATCTACATATGCTGAT 1950
|||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 2461 GAAGAAGTTCTGGCTGCTGAATCCTCTTTAAGAACTGGCCCTCCATCTACATATGCTGAT 2520
Query 1951 AAAGTGTTTGAGAATGACATTAACATTGCTATCAGATTGACTGAAAAAGCGTACAAAGAA 2010
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2521 AAAGTGTTTGAAAATGACATGAACATTGCTATCAGATTGACTGAAAGAGCGTACAAAGAT 2580
Query 2011 TGTTTGTTTAGGGAGGCACTTAAGAATGGGGTTTACGACTTACAAGCTGCTCGAGATGAG 2070
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 2581 TGTTTGTTTAGGGAGGCACTTAAAAATGGGTTTTACGACTTACAAGCTGCTCGGGATGAG 2640
Query 2071 TATAGAAACTCTTGTGGCAGTGACGAAAATATGAACCATGACTTGATACTGAAC-TTCAT 2129
|||||| ||||||||| | || | | ||||||||||||||||||||| || || ||
Sbjct 2641 TATAGACTCTCTTGTGGAACTG--G-AGGCATGAACCATGACTTGATACTG-ACATTTAT 2696
Query 2130 GGATGTGCAAACACGCCTCATTGAACCAATCTGTCCCCAGTTTGCAGAATATGTATGGAG 2189
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2697 GGATGTGCAAACACGCCTCATTGAACCAATCTGTCCCCAGTTTGCAGAATATGTTTGGAG 2756
Query 2190 GAAACTTTTGAAGAAGGAAGGTTCTGTGGTAACAGCAGGCTGGCCTAC-ATCAAATGAGC 2248
||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 2757 GAAACTTTTGAAGAAGGAAGGTTGTGTAGTAACAGCAGGCTGGCC-ACCATCAAATGAGC 2815
Query 2249 CAGATTTGGTTCTCAAGAGTGCTAACAAATATTTGCAAGATTCTATTGTCTTAATGAGAA 2308
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2816 CAGATTTGGTGCTCAAGAGTGCAAACAAATATTTGCAAGATTCTATTGTTTTAATGAGAA 2875
Query 2309 AGCT-CT-----------T---AGGTTCCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAA 2353
|||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 2876 AGCTTCTACAAAAACAACTCTTAGGTTCCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAA 2935
Query 2354 CAGCAGCGCCAGCGG-GAAAGTTAATAGGCCTAGTATATGTGAATGAGCAATTTGATTGA 2412
|||| | ||||| || ||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 2936 CAGCTGTGCCAGAGGAGAAT-TTAAAAGGCCTAGTATATGTGAATGAGCAATTTGATGGA 2994
Query 2413 TGGAGAGCTCACTGCCTCAAG-TTCCTGCAAAGCAAATTTGACCAGCAAACCTATCGTTT 2471
||||||||||||||||| | | ||| ||||||| | ||||||||||||||||| ||||||
Sbjct 2995 TGGAGAGCTCACTGCCTGAGGATTC-TGCAAAGTAGATTTGACCAGCAAACCTGTCGTTT 3053
Query 2472 TGCCCCTGATGCAGAGATAATTGCAGAACTAAAGGAGATATTACAGAAGGATGGACA-A- 2529
|| ||| ||||||| |||| |||||||||||||||||||||| ||| |||| ||||| |
Sbjct 3054 TGACCCGGATGCAGTGATACTTGCAGAACTAAAGGAGATATTGCAGCAGGAGGGACATAC 3113
Query 2530 -G----C---AGA-AAA--CA-----TTTACATGCCTTTCGTTAAATTCAAGAAGAAGGA 2573
| | | | ||| || ||| |||||||||| |||||||||||||| | ||
Sbjct 3114 AGAAAACTTCAAACAAATTCAGAAGGTTTGCATGCCTTTCCTTAAATTCAAGAAGGACGA 3173
Query 2574 GGCAATATCTATTGGCATTCAGGCTCTAAATTTGAGGCTGCCTTTTGGAGAGATTGAAGT 2633
||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 3174 GGCAATAGCTATTGGCACTCAGGCTCTAAATTTGAGGTTGCCTTTTGGAGAGATCGAAGT 3233
Query 2634 CCTTAAGAGTAACATGGACTTGATCAAGCGGCAACTTGGTCTTGAAGAG-TTGAAGTATA 2692
|||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 3234 CCTTCAGAGTAACATGGACTTGATCAGGCGGCAACTTGGTCTTGAAGAGGTTGAAATATA 3293
Query 2693 TTCTGCAAGTGACCCTGATGATGTTTCAAAAGCTGGTCCACATGCTTCACTGCTGAAGAA 2752
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| || |
Sbjct 3294 TTCTGCAAGTAACCCTGATGATGTTTTAAAAGCTGGTCCACTTGCTTCACTGCTGCAGCA 3353
Query 2753 GAATCCTCCATCTCCGGGCAATCCAACCGCCATCTTTGTGACCAG 2797
||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 3354 GAATCCTCCATCTCCTGGCAGCCCAACCGCCATCTTTGTGACCAG 3398
Score = 1567 bits (848), Expect = 0.0
Identities = 1074/1183 (91%), Gaps = 15/1183 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCTGAATCCAATAGCTTTGCGAAAAGAGATCGTCTTCTCGAGATTGAGGTAGCA 60
||||||||||| || || ||||| |||| |||||||||||||| ||||||||||||||
Sbjct 148 ATGGCATCTGATTCGAAAAGCTTCGCGAGGAGAGATCGTCTTCTTGAGATTGAGGTAGCG 207
Query 61 GTTCGAAAGTGGTGGGAGGATGAGGATGTTTTCAGGGCTGAATCTCGTGATCATCTTCCA 120
||||| ||||||||||| |||||||| || |||| ||||||||||||||| ||||||||
Sbjct 208 GTTCGCAAGTGGTGGGAAGATGAGGAAGTATTCAAGGCTGAATCTCGTGAGAATCTTCCA 267
Query 121 AAGCCAGGAGAAAAGTTCTTCTCCACTTTCCCTTTTCCC-TATATGAATGGTTATCTACA 179
|| || ||||||||||||||||| || ||||| |||||| ||||||||||||||||||||
Sbjct 268 AAACCTGGAGAAAAGTTCTTCTCAACCTTCCC-TTTCCCGTATATGAATGGTTATCTACA 326
Query 180 CATTGGGCATG-CTTTCTCACTCTCCAAGGTTGATTTTGCTTCTGCTTACCATAGACTAA 238
||||||||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 327 CATTGGGCATGCCTTT-TCATTGTCCAAGGTTGATTTTGCTTCTGCTTACCATAGGCTAA 385
Query 239 GAGGTGCCAATGTGCTTCTTCCTTTTGGTTTCCACTGTACTGGTATGCCTATTAAGGCTT 298
|||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 386 GAGGAGCTAATGTGCTTCTTCCCTTTGGTTTCCATTGTACTGGTATGCCTATTAAGGCAT 445
Query 299 CCGCGGATAAGCTTTCTCGTGAGATCCTACAGTTTGG-AGACCCTCCTGTCTTCCCTGCT 357
| ||||||||||||||||||||||| | ||||||||| | |||||||||| ||| |||||
Sbjct 446 CTGCGGATAAGCTTTCTCGTGAGATTCAACAGTTTGGTA-ACCCTCCTGTGTTCACTGCT 504
Query 358 CAAGA-TA-ACC-TAGCTCCTCAAGTTCACGAGGAGGGCAGTGATAC-ACCGGCTTTAAC 413
|||| | ||| || |||| ||||||| |||||| |||||||||| | |||||| |
Sbjct 505 GAAGACAACACCAAAGTTCCTGAAGTTCAGGAGGAGAGCAGTGATACTA-TAGCTTTACC 563
Query 414 GGGTCAGTTCAAGGGAAAGAAGTCTAAGGTGGCTGCGAAATCTGGTGGACAGGTTTATCA 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGGTCAGTTCAAGGGAAAGAAGTCTAAGGTGGCTGCGAAATCTGGTGGACAGGTTTATCA 623
Query 474 GTGGCAGATTATGCGCAGTTTTGGTCTTACTGACAGTGAGATTGCAAGATTTCGG-GATC 532
|||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 624 GTGGGAGATTATGCGCAGTTTTGGTCTTACTGACAGTGAGATTGCAA-AGTTCCAAGATC 682
Query 533 CAGATGAATGGTTGTATTACTTTCCCCCTTTGGCTGTTGAAGATCTCAAGGCATATGGAT 592
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 683 CTTATGAATGGTTGTATTACTTTCCCCCTTTGGCTGTTGAAGATCTCAGGGCATATGGAT 742
Query 593 TGGGCTGTGACTGGAGACGGTCATTTGTGACTACTGATGTTAATCCTTTTTTCGATGCCT 652
|||| ||||| |||||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct 743 TGGGTTGTGATTGGAGACGCTCCTTTGTGACCACTGATGTTAATCCCTTTTTCGATGCCT 802
Query 653 TTGTGAGGTGGCAGATGAGGAAGTTGAAAGCTCTGGGAAAGATTGTCAAAGACTGTAGGT 712
||||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||
Sbjct 803 TTGTGAGGTGGCAGATGAGGAAGTTGAAATCTATGGGAAAGATTGTTAAAGACCGCAGGT 862
Query 713 ACACAATATTCTCACC-TCTAGATCGCCAGCCTTGTGCTGATCACGACCGTGCTACTGGT 771
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 863 ACACAATATTCTCACCGT-TAGATGGCCAGCCTTGTGCTGATCACGACCGTGCTACTGGC 921
Query 772 GAAGGTGTTCAGCCTCAGGAGTATACTCTCATAAAGATGGAAGTAGTGAAGCCATTTCCT 831
||||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||
Sbjct 922 GAAGGTGTTCAGCCTCAAGAGTACACACTCATTAAGATGGAAGTAGTCAAGCCATTTCCT 981
Query 832 CTGAAACTGAGTCCTTTGGAAGGAAAAAGAGTGTTTTTGGCTGCAGCTACTTTGAGGCCT 891
||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||| |||
Sbjct 982 CTGAAACTGGGTCCTTTGGAAGGTAAGAGAGTTTTTTTGGCTGCAGCTACTTTGAGACCT 1041
Query 892 GAGACCATGTATGGACAAACAAACGCTTGGGTACTACCTGATGGGAAATATGGAGCTTAT 951
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1042 GAGACCATGTATGGACAAACAAACGCATGGGTACTACCTGATGGGAAATATGGGGCTTAT 1101
Query 952 GAAATCAGTGAAACTGATGTCTTCATCCTTACTGAGAGATCTGCACTCAACCGTGCCTAC 1011
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1102 GAAATCAGTGAAACTGATGTCTTCATCCTTACTGAGAGAGCTGCACTCAACCTTGCGTAC 1161
Query 1012 CAGAACTTCTCAAAGAACCCTAAGAAACCATCTTGCTTGGTCGAGTTGACCGGTTATGAT 1071
|||||||||||||||| |||| |||| || || |||||||| ||||||||||| ||||||
Sbjct 1162 CAGAACTTCTCAAAGATCCCTCAGAAGCCTTCCTGCTTGGTTGAGTTGACCGGGTATGAT 1221
Query 1072 CTGATTGGACTCCCTCTGAAGTCTCCTCTGTCAGTGAACGAGATCATCTATGCTCTGCCC 1131
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1222 CTGATTGGACTCCCTTTGAGGTCTCCTCTGTCAGTCAACGAGATCATCTATGCTCTGCCC 1281
Query 1132 ATGTCAACGATTCTAACCAACAAAGGTACTGGTATCGTCACCA 1174
|||| || ||||| ||||||||||||||||| || |||||||
Sbjct 1282 ATGTTGACCATTCTGACCAACAAAGGTACTGGCATTGTCACCA 1324
> Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904
Length=1374
Score = 505 bits (273), Expect = 8e-142
Identities = 367/409 (90%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 1977 TGCT-ATCAGATTGACTGAAAAAGCGTACAAAGAATGTTTGTTTAGGGAGGCACTTAAGA 2035
|||| || | ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 332 TGCTGATAAAATTGACTGAAAAACCGTACAAAGATTGTTTGTTTAGGGAGGCACTTAAGA 391
Query 2036 ATGGGGTTTACGACTTACAAGCTGCTCGAGATGAGTATAGAAACTCTTGTGGCAGTGACG 2095
||||| ||||||||||||||||||| |||||||||||| || |||||||||||||| ||
Sbjct 392 ATGGGTTTTACGACTTACAAGCTGCACGAGATGAGTATGGACTCTCTTGTGGCAGTGGCG 451
Query 2096 AAAATATGAACCATGACTTGATACTGAACTTCATGGATGTGCAAACACGCCTCATTGAAC 2155
|||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 452 ---GTATGAACCATGATTTGATACTGCACTTCATGGATGTGCAAACACACCTCATTGAAC 508
Query 2156 CAATCTGTCCCCAGTTTGCAGAATATGTATGGAGGAAACTTTTGAAGAAGGAAGGTTCTG 2215
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 509 CAATCCGTCCCCAGTTTGCAGAATATGTATGGAGGAAACTTTTTAAGAAGGAAGGTTGTG 568
Query 2216 TGGTAACAGCAGGCTGGCCTACATCAAATGAGCCAGATTTGGTTCTCAAGAGTGCTAACA 2275
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 569 TGGTAACAGCAGGCTGGCCTACATCAGATGAGCCAGATTTGGTTCTCAAGAGTGCTAACA 628
Query 2276 AATATTTGCAAGATTCTATTGTCTTAATGAGAAAGCT-CT-----------T---AGGTT 2320
||||||||||||||||||| ||||||||||||||||| || | |||||
Sbjct 629 AATATTTGCAAGATTCTATAGTCTTAATGAGAAAGCTTCTACAAAAACAGCTCTTAGGTT 688
Query 2321 CCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAACAGCAGCGCCAGCGGG 2369
||||||||||||||||||||| ||||||||| ||||||| ||||| |||
Sbjct 689 CCAAGAAGGCTGCTAAGAAAGCTGCTCAAGTTACAGCAGTGCCAGAGGG 737
Score = 370 bits (200), Expect = 3e-101
Identities = 259/287 (90%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 80 ATGAGGATGTTTTC-AGGGCTGAATCTCGTGATCATCTTCCAAAGCCAGGAGAAAAGTTC 138
||||||| || ||| | ||||||||||||| ||||||| ||||||| ||||||||||
Sbjct 1 ATGAGGAAGTATTCAAACTCTGAATCTCGTGAGAATCTTCCTAAGCCAGAAGAAAAGTTC 60
Query 139 TTCTCCACTTTCCCTTTTCCC-TATATGAATGGTTATCTACACATTGGGCATGCTTTCTC 197
||||||||||| | |||||| | |||||||||||||||||||| ||| ||||| |||||
Sbjct 61 TTCTCCACTTTTTC-TTTCCCTTGTATGAATGGTTATCTACACACTGGCCATGCCTTCTC 119
Query 198 ACTCTCCAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGAGGTGCCAATGTGCTTCT 257
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 ACTCTCTAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGAGATGCCAATGTGCTTCT 179
Query 258 TCCTTTTGGTTTCCACTGTACTGGTATGCCTATTAAGGCTTCCGCGGATAAGCTTTCTCG 317
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 TCCTTTTGGTTTCCACTGTACTGGTATGCCAATTAAGGCTTCTGCGGATAAGCTTTCTCG 239
Query 318 TGAGATCCTACAGTTTGG-AGACCCTCCTGTCTTCCCTGCTCAAGAT 363
|||||| | ||||||||| | |||||||||| ||| |||||||||||
Sbjct 240 TGAGATTCAACAGTTTGGTA-ACCCTCCTGTGTTCACTGCTCAAGAT 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105586159140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5