BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50170.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg314421 jgi|Araly1|314421|fgenesh1_pm.C_scaffold_1003201 529 2e-149 > Ahg314421 jgi|Araly1|314421|fgenesh1_pm.C_scaffold_1003201 Length=699 Score = 529 bits (286), Expect = 2e-149 Identities = 306/316 (97%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 426 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCGAA 485 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 384 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCAAA 443 Query 486 ACGTGTAGTTGTGAGCCCGTTTTTTCTATTTCCTGGAAGACATTGGCATACGGACATTCC 545 ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 444 ACGAGTAGTTGTGAGCCCATTTTTTCTATTTCCTGGAAGACATTGGCATAAGGACATTCC 503 Query 546 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 563 Query 606 TCTCGGCCCCCATAATCTCCTCCTGGACGTTGTAAATGACAGAATCCAACATTGCTTGAG 665 |||||||| |||||||||||| |||||||||| || ||||||||||||||||||||||| Sbjct 564 TCTCGGCCTTCATAATCTCCTCATGGACGTTGTGAACGACAGAATCCAACATTGCTTGAG 623 Query 666 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAATAAGTGCAAGCT 725 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 624 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAACAAGTGCAAGCT 683 Query 726 CTACAATAGTTCTTAG 741 |||||||||||||||| Sbjct 684 CTACAATAGTTCTTAG 699 Score = 398 bits (215), Expect = 5e-110 Identities = 318/363 (88%), Gaps = 25/363 (7%) Strand=Plus/Plus Query 66 GACGACTCAGTCGCAGTTCTTAG-TGAACCTCTCTTACGGAGGCCTCGCCTCCCAAAGTA 124 ||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||| | | Sbjct 6 GACGACTCAGTCGCAGTTCTT-GATGAACCTCTCTCATGGA---CTCTCCTCCCAACGCA 61 Query 125 ATCTCAGAGCGAATAATCGTGTTTCACCTTCTTCTTGTCAAATTACACGAACA-AATCGC 183 ||||||| ||| ||| |||||||||| ||||||| |||||||||||||||| | ||||| Sbjct 62 ATCTCAGCGCGGATAGTCGTGTTTCATCTTCTTCATGTCAAATTACACGAA-AGAATCGT 120 Query 184 TCATGGGCATTACCAGTTTCCTTTAAAGTTGAGAAATTTCAACTCCAACGAGGAAGGAGG 243 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 121 TCATGGGCATTTCCAGTTTCCTTAAAAGTTGAGAAATTTCAACTCCAACGAGGAACGAGA 180 Query 244 AGAAGAGGATCACCATGTTTTGGGGAGAGCGAAGGGTTGGTCAAAAATGGGATTGGTGAT 303 ||||||||||||||||| | |||||||||||||||||||||||| Sbjct 181 AGAAGAGGATCACCATG---T---------------TTGGTCAAAAATGGGATTGGTGAT 222 Query 304 GCTGATGGGATTATAATTGTTGATCACGGTTCTCGTCGCCGTGAATCCAATCTTATGCTT 363 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 223 GCTGATGGGATTATAATTGTCGATCACGGTTCTCGCCGCCGTGAATCCAATCTTATGCTT 282 Query 364 GAGGAGTTTGTGAAAATGTTCAAAGAAAAAACTGGTTACCCAATTGTAGAGCCTGCTCAT 423 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 283 GAGGAGTTTGTGAAAATGTTCAAAGACAAAACTGGATACCCAATTGTGGAGCCTGCTCAT 342 Query 424 ATG 426 ||| Sbjct 343 ATG 345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5