BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50170.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314421 jgi|Araly1|314421|fgenesh1_pm.C_scaffold_1003201 529 2e-149
> Ahg314421 jgi|Araly1|314421|fgenesh1_pm.C_scaffold_1003201
Length=699
Score = 529 bits (286), Expect = 2e-149
Identities = 306/316 (97%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 426 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCGAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 384 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCAAA 443
Query 486 ACGTGTAGTTGTGAGCCCGTTTTTTCTATTTCCTGGAAGACATTGGCATACGGACATTCC 545
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 444 ACGAGTAGTTGTGAGCCCATTTTTTCTATTTCCTGGAAGACATTGGCATAAGGACATTCC 503
Query 546 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 563
Query 606 TCTCGGCCCCCATAATCTCCTCCTGGACGTTGTAAATGACAGAATCCAACATTGCTTGAG 665
|||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 564 TCTCGGCCTTCATAATCTCCTCATGGACGTTGTGAACGACAGAATCCAACATTGCTTGAG 623
Query 666 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAATAAGTGCAAGCT 725
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAACAAGTGCAAGCT 683
Query 726 CTACAATAGTTCTTAG 741
||||||||||||||||
Sbjct 684 CTACAATAGTTCTTAG 699
Score = 398 bits (215), Expect = 5e-110
Identities = 318/363 (88%), Gaps = 25/363 (7%)
Strand=Plus/Plus
Query 66 GACGACTCAGTCGCAGTTCTTAG-TGAACCTCTCTTACGGAGGCCTCGCCTCCCAAAGTA 124
||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||| | |
Sbjct 6 GACGACTCAGTCGCAGTTCTT-GATGAACCTCTCTCATGGA---CTCTCCTCCCAACGCA 61
Query 125 ATCTCAGAGCGAATAATCGTGTTTCACCTTCTTCTTGTCAAATTACACGAACA-AATCGC 183
||||||| ||| ||| |||||||||| ||||||| |||||||||||||||| | |||||
Sbjct 62 ATCTCAGCGCGGATAGTCGTGTTTCATCTTCTTCATGTCAAATTACACGAA-AGAATCGT 120
Query 184 TCATGGGCATTACCAGTTTCCTTTAAAGTTGAGAAATTTCAACTCCAACGAGGAAGGAGG 243
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 121 TCATGGGCATTTCCAGTTTCCTTAAAAGTTGAGAAATTTCAACTCCAACGAGGAACGAGA 180
Query 244 AGAAGAGGATCACCATGTTTTGGGGAGAGCGAAGGGTTGGTCAAAAATGGGATTGGTGAT 303
||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 181 AGAAGAGGATCACCATG---T---------------TTGGTCAAAAATGGGATTGGTGAT 222
Query 304 GCTGATGGGATTATAATTGTTGATCACGGTTCTCGTCGCCGTGAATCCAATCTTATGCTT 363
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 223 GCTGATGGGATTATAATTGTCGATCACGGTTCTCGCCGCCGTGAATCCAATCTTATGCTT 282
Query 364 GAGGAGTTTGTGAAAATGTTCAAAGAAAAAACTGGTTACCCAATTGTAGAGCCTGCTCAT 423
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 283 GAGGAGTTTGTGAAAATGTTCAAAGACAAAACTGGATACCCAATTGTGGAGCCTGCTCAT 342
Query 424 ATG 426
|||
Sbjct 343 ATG 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5