BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50180.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474150 jgi|Araly1|474150|fgenesh2_kg.1__4104__AT1G50180.1 3517 0.0
> Ahg474150 jgi|Araly1|474150|fgenesh2_kg.1__4104__AT1G50180.1
Length=2580
Score = 3517 bits (1904), Expect = 0.0
Identities = 2070/2151 (96%), Gaps = 8/2151 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTAGGACAGTTGCTCTTGGAAGAA 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTGGGAGAGTTGCTCTTGGAAGAA 60
Query 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120
Query 121 TTGAATTGCTTTTTGAAAGATGCAGATGAGAAGCAGCATGAAAGCGAGAGAGTGCGTAAC 180
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 TTGAAGTGCTTTTTGAAAGATGCAGATGAGAAGCAGTATAAAAGCGAGAGAGTGCGTAAC 180
Query 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATTTTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATGTTTC 240
Query 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTAC 300
Query 301 ATCTTGAACGAAGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTTGAACGAGGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360
Query 361 AGGCTTTCTAAGATAGCAGCAAGCATGCTAGATTTTGGTATAAAAGAATCTATGGGCAGA 420
| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 361 AAGCTTTCTAAGATAGCAGCAAGCATGCTAGATTACGGTATAATAGAAGCTATGGGCAGA 420
Query 421 GAAGGTTTGAGTTTGTCTGATAGTCTAAGAGAACAGAGGCAATCGTTTCCATAT-GTTGT 479
||||| ||||||||||||||||||| ||||||||||||||| |||||||||| | |||||
Sbjct 421 GAAGGCTTGAGTTTGTCTGATAGTCAAAGAGAACAGAGGCAGTCGTTTCCAT-TCGTTGT 479
Query 480 TGAGCATAATCTTGTTGGGTTAGAGCAGAGTCTAGAGAAGTTGGTGAATGATTTAGTTTC 539
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TGAGCATAATCTTGTCGGGTTGGAGCAGAGTCTTGAGAAGTTGGTGAATGATTTAGTTTC 539
Query 540 CGGAGGTGAGAAACTAAGAGTCAC-GTCCATCTGCGGAATGGGTGGTTTGGGGAAAACAA 598
||||||||||||||||| ||||| | ||||||| || ||||||||||||||||||||||
Sbjct 540 TGGAGGTGAGAAACTAAGGGTCACAG-CCATCTGTGGGATGGGTGGTTTGGGGAAAACAA 598
Query 599 CTTTAGCCAAACAGATTTTCCATCAC-CATAAAGTGAGGCGTCATTTCGATAGATTTGCT 657
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 599 CTTTAGCCAAACAGATTTTCCATCACGGA-AAAGTGAGGCGTCATTTCGATAGGTTTGCT 657
Query 658 TGGGTATATGTTTCTCAAGACTGTAGACGGAGACATGTTTGGCAAGACATTTTTCTGAAT 717
||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||
Sbjct 658 TGGGTATATGTTTCTCAAGACTGTAGACGGACACATATTTGGCAAGAGATTTTTCTAAAT 717
Query 718 CTCAGCTACAAGGATGAAAATCAGAGAATACTCAGCTTGAGGGATGAACAACTTGGAGAG 777
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 CTCAGCTACAAGGATGAGAATCAGAGAATACTCAGCTTGAGGGATGAACAGCTTGGAGAG 777
Query 778 GAGTTGCATCGGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGTTGCATAAGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837
Query 838 AAAGATGCTTGGGATTGTCTGAAACACGTCTTTCCACATGAAACAGGAAGCGAAATAATC 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 AAAGATGCTTGGGATTGTCTGAAACACGTTTTTCCACATGAAACAGGAAGCGAAATAATC 897
Query 898 CTCACTACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCACCACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957
Query 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017
Query 1018 AGAGAAAATATAGAGCCAATGTTGGTCAAGAAAATGGAGGAGATTGGGAAGCAGATAGTT 1077
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 AGAGAAGATATAGAGCCAATGTTGGTCAAGAAACTGGAGGAGATTGGGAAGCAGATAGTC 1077
Query 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAACGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAATGAAA 1137
Query 1138 AGTACATGGAACGAGTGGCAAAGAGTATGCGAGAACATCAAATCATATGTTTCAAATGGA 1197
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1138 AGTACATGGAACGAGTGGCAAAGAGTATACGAGAACATCAAATCATATGTTTCAAACGGA 1197
Query 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTGTGCTTGAGTTACGAG 1257
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTATGCTTGAGTTACGAG 1257
Query 1258 TACTTGCCTCCCCATGTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TACTTGCCTCCCCATCTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317
Query 1318 GAGGTTCATGTGGGAACACTAGTTAGTTATTGCATCGCAGAGGGAATGGTTATGCCTGTA 1377
|||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 1318 GAGGTTCATGTGGGAACATTAGTTAGTTACTGGATCGCAGAGGGAATGGTTATGCCTGTA 1377
Query 1378 AAACACACAGAGGCTGGCACGACAGTGGAAGATGTCGGGCAAGATTATCTTGAGGAATTA 1437
|||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||
Sbjct 1378 AAACACACAGAGGCTGGCACGACAGTAGAAGATATTGGGCAAGATTATCTCGAAGAATTA 1437
Query 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497
Query 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAAAGCAAGAAAGCTTT 1557
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAGAGCAAGAAAGCTTT 1557
Query 1558 GTGCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTATATCTCTTTCGACC 1617
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1558 GTCCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTTTATCTCTTTCGACC 1617
Query 1618 AATACATCTCGTAGAATTTCTGTCCAACTACATGGTGGAGCAGAGGAGCACCATATCAAG 1677
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1618 AATACATCTCGTAGAATTTCTGTTCAATTACATGGTGGAGCAGAGGAGCACCAGATCAAG 1677
Query 1678 AGTCTGTCGCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTTGAGGGA 1737
|| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 AGACTTTCTCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTCGAGGGA 1737
Query 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAGGA-A 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAG-ATA 1796
Query 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACATCATCTATTGGAAACTTAAAGTT 1856
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACAACATCTATTGGAAACTTAAAGTT 1856
Query 1857 GATGATTACTCTAGACTTGTTCGTGAAAGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1857 GATGATTACTCTAGACTTGTTTGTGAAGGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916
Query 1917 TTTTCCTGTTGGAAAGTGCAATCCAAGGGATCTTTTAGCAATGACAAGTCTTAGAAGATT 1976
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1917 TTTTCCTGTTGGAAAATGCAATCCAAGGGATCTTTTAGCAATGACCAGTCTTAGAAGATT 1976
Query 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGTGGTGGTGTCTTCACTAAGTAAAGT 2036
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGAGGTGGTATCTTCTCTAAGTAAAGT 2036
Query 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096
Query 2097 AGATGTAACACAGTTGGTCTCTGCATTTACTAATCTCTGTGAACTGGAACT 2147
||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 2097 TGATGTAACACAGTTGGTTTCTGCATTTACTGATCTCTCTGAACTGGAACT 2147
Score = 350 bits (189), Expect = 4e-95
Identities = 223/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 2335 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCACCGTGGAG 2394
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2341 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCTCCATGGAG 2400
Query 2395 CTAAAGTGTTGTAACAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTAAAAAATCTA 2454
| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2401 TTGAAGTGCTGTAAGAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTGAAGAATCTA 2460
Query 2455 CAAGAAGTAGAGATTGGGAACAGGACAAAGGCATTTAAGGACAAGCTAATCTCTGGTGGT 2514
|||||||| |||||| |||||| || ||||||||| ||||| ||||| ||||||||||||
Sbjct 2461 CAAGAAGTGGAGATTAGGAACATGAAAAAGGCATTAAAGGATAAGCTGATCTCTGGTGGT 2520
Query 2515 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTTGAGAACTGTGAACTTTAA 2574
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2521 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTCGAGAACTGTGACCTTTAA 2580
Score = 268 bits (145), Expect = 1e-70
Identities = 152/155 (98%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 2177 AACAGAGTTTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2236
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 AACAGAG-TTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2206
Query 2237 ACCCGTTTATGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 ACCCGTTTCTGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2266
Query 2297 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAGAAT 2331
||||||||||||||||||||||||||||||| |||
Sbjct 2267 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAAAAT 2301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5