BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50190.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923459 jgi|Araly1|923459|scaffold_104740.1 580 9e-165
Ahg923458 jgi|Araly1|923458|scaffold_104739.1 279 4e-74
> Ahg923459 jgi|Araly1|923459|scaffold_104740.1
Length=587
Score = 580 bits (314), Expect = 9e-165
Identities = 487/569 (86%), Gaps = 17/569 (3%)
Strand=Plus/Plus
Query 1126 AGCCGAGAATGTTGTGGTTTCATGTACAAGTGTTGTGAAAAGGATTGTGACTTTCAACTA 1185
||||||||||||||||||| |||||||||||| || ||||||| |||||| |||||| ||
Sbjct 1 AGCCGAGAATGTTGTGGTTACATGTACAAGTGCTGCGAAAAGGGTTGTGAATTTCAAATA 60
Query 1186 GATGCAAGGTGTGCTTCGCTTCCTGATCCTATAATCCATGACTGCCATCCACATGATCAC 1245
|||||||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GATGCAAGATGCGCTTCACTTACTGATCCTATAATCCATGACTGCGATCCACATGATCAC 120
Query 1246 CC-TCTCTTCTTCAATTTGACCGAAGGTGAATGCATGGTTTGTAAG-ATTACATCCGGAT 1303
|| | | ||| ||||||||||| ||||||||||||||| ||||||| || || || | |
Sbjct 121 CCGT-TATTCATCAATTTGACCAAAGGTGAATGCATGGCTTGTAAGTCTTCCA-CCTGCT 178
Query 1304 TAAGAAAGTACTTAGAATGTATTGAATG-CAGGTCCTTTTCGTGTCTTACTTGTGCTACT 1362
| | |||| |||||||||| ||||| ||| | ||||| | |||||| |||||||||
Sbjct 179 CATCTATGTACCTAGAATGTATCGAATGCCAGCT-CTTTTTGGGTCTTAAATGTGCTACT 237
Query 1363 ATGCCT-CTGGTGGCTCACTACAAGTACGATAAACATCCACTCACTCTTTGCTGTGGAGA 1421
||||| || |||| |||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct 238 CTGCCTACT-GTGGTTCACTATAAGCACGATAAACATCCACTCACTTTTTGCTGCGGAGA 296
Query 1422 AGAAAAGACAAAAGATCTCCAGTATTGGTGCGAGATTTGTGAATCAGAAA-TAGATGC-A 1479
||| ||||||| ||||| |||||||||||||||||| |||||| || ||| ||||||| |
Sbjct 297 AGAGAAGACAACAGATCCCCAGTATTGGTGCGAGATCTGTGAAACA-AAACTAGATGCTA 355
Query 1480 CAAAAGTGGTTCTACACATGCAGCTATTGTTCTGTCACTCTTCATGTTACATGTTTACTG 1539
| |||||||||||| ||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct 356 C-AAAGTGGTTCTATACATGCAACTCTTGTTCAGTCACTCTTCATGTTACATGCTTACTG 414
Query 1540 GGAGATAAGGTCTACATGAAGCCAAACCATATGATCAAGATGTACGAAGGTGCAAAAACA 1599
|| |||| ||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct 415 GGTGATAGGGTCTACATGAAGCCAAACCATATGATCAGGATGCATAAAGGTGCTGAAA-- 472
Query 1600 AGTATTGGTATTGTACCCAACAGTGGTAACTCTAGACCAATGTGTGATGGATGTAGAA-G 1658
||||| ||||||| |||||||||| |||||||||||| ||||| ||||||||| || |
Sbjct 473 -GTATTCTTATTGTATCCAACAGTGGCAACTCTAGACCAGTGTGTAATGGATGTA-AACG 530
Query 1659 CCGTTGTGTGGACACTTTGGTAGTCAAGA 1687
| |||| || |||||| ||||||||||||
Sbjct 531 CTGTTGCGTAGACACTATGGTAGTCAAGA 559
> Ahg923458 jgi|Araly1|923458|scaffold_104739.1
Length=422
Score = 279 bits (151), Expect = 4e-74
Identities = 163/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1689 CAAGATGAATTATGCTAGAGATGAACTAGACGGGGCTATGATCATATCAAAGACTCTAAC 1748
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 17 CAAGATGAATTATGGTAGAGATGAACTAGACGGGGCTATGATCATATCAAAGACTCTATC 76
Query 1749 AAAGAGTGACATTGTTGGTAATGTGGCATTACCAAAAGCGCAAGTGATGTCTGTCCTCAC 1808
|||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct 77 AAAGAGTGACATTGTTGGTAATGTGGTATTACCAAAAACACAAGTGATGTCTGTCCTCAC 136
Query 1809 GAGGATGAATGGTGTCACAGATGAGGGTTTGGACAACGGTTTTGAAGTG 1857
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 137 GAGGATGAATGGTGTTACAGATGAGGGTTTGGACAACGGTTTTGAAGTG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5