BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50220.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923458 jgi|Araly1|923458|scaffold_104739.1                        599    8e-171


> Ahg923458 jgi|Araly1|923458|scaffold_104739.1
Length=422

 Score =  599 bits (324),  Expect = 8e-171
 Identities = 367/388 (95%), Gaps = 2/388 (1%)
 Strand=Plus/Plus

Query  226  AGCAAGATGAATTATGCTAGAGATGAACTAGACGGGGCTATGATCATATCAAAGACTCTA  285
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  15   AGCAAGATGAATTATGGTAGAGATGAACTAGACGGGGCTATGATCATATCAAAGACTCTA  74

Query  286  ACAAAGAGTGACATTGTTGGTAATGTGGCATTACCAAAAGCGCAAGTGATGTCTGTCCTC  345
             ||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct  75   TCAAAGAGTGACATTGTTGGTAATGTGGTATTACCAAAAACACAAGTGATGTCTGTCCTC  134

Query  346  ACGAGGATGAATGGTGTCACAGATGAGGGTTTGGACAACGGTTTTGAAGTGCAAGTCCAC  405
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  ACGAGGATGAATGGTGTTACAGATGAGGGTTTGGACAACGGTTTTGAAGTGCAAGTCCAC  194

Query  406  GACATAATGGAAGACGATCTGTACACAGTTACCCTGAAAAGAATTGACGACA-TGAAGTA  464
            |||||||| ||||||||| | | ||||||||||||||||||||||||||||| | |||||
Sbjct  195  GACATAATAGAAGACGATTTATGCACAGTTACCCTGAAAAGAATTGACGACACT-AAGTA  253

Query  465  TTATTTCGGGACTGGTTGGAGTACTATGAAGCATTCATTAGATCTCGTAGAAGGCGATGT  524
            ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  254  TTATTTCGGGACTGGTTGGAGTATTATGAAGCATTCGTTAGATCTCGTAGAAGGCGATGT  313

Query  525  TCAGAAGCTCTATTGGGATCAGTTTGAAAACAAATTCATTGTTCTCAATTTTCAGCATAA  584
            || |||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct  314  TCTGAAGCTTTACTGGGATCAGTTTGAAAACAAATTCATTGTTCTTAATTTTCAGTATAA  373

Query  585  GACTATGGGAATAATGATTCCTGTGTAG  612
            |||||||||||||||||||  |||||||
Sbjct  374  GACTATGGGAATAATGATTAATGTGTAG  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5