BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50250.1
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923463 jgi|Araly1|923463|scaffold_104744.1 3572 0.0
Ahg494803 jgi|Araly1|494803|fgenesh2_kg.8__619__AT5G42270.1 1786 0.0
> Ahg923463 jgi|Araly1|923463|scaffold_104744.1
Length=2267
Score = 3572 bits (1934), Expect = 0.0
Identities = 2163/2271 (95%), Gaps = 26/2271 (1%)
Strand=Plus/Plus
Query 108 GAAGAAGAAGAAACAGAGCTGCTTCAAT----G-----GCTTCTAACTCATTACTACGTT 158
|||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 4 GAAGAAGAAGAAACAGAGCTGCTTCAATGGCGGCCACAGCTTCTAACTCATTACTACG-- 61
Query 159 CTTCTTCAAATTTCTTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 218
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 -TTCTTCAAA--T-TTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 117
Query 219 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGTCTCCCGTGCTAAATACCAAATCACTCGAT 278
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 118 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGCCTCCCGTGCAAAATACCAAATCACTCGAT 177
Query 279 CGTCTCAAGACGAA-AATTCGCCAAATGGTAAACCCAATTCGCCATTCTCGTCGCAAGTA 337
|||||| |||| || ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 178 CGTCTCTAGAC-AACAATTCTCCAAATGGTAAACCCAATTCGCCACTCTCGTCGCAAGTT 236
Query 338 GCCTTAGCAGCTATTCTACTATCTTCAATTTCATC-T-T-CGCCGCTAGCTTTAGCTGTA 394
|| |||||||||||||| | |||||||||||||| | | |||||| |||||||||||||
Sbjct 237 GCTTTAGCAGCTATTCTGTTCTCTTCAATTTCATCATCTCCGCCGCGAGCTTTAGCTGTA 296
Query 395 GTGGACGAACCAGCTTCTCCGTCTGTCGTTAT---AG---AATCTCAAGCTGTGAAGCCA 448
|||||||||||||||||||||||| ||||| | || || ||||||| |||||||||
Sbjct 297 GTGGACGAACCAGCTTCTCCGTCTCTCGTTGTGGAAGCTCAAGCTCAAGCAGTGAAGCCA 356
Query 449 TCGACGCCATCGCCATTGTTCATTCAGAACGAGATACTTAAGGCTCCTAGTCCTAAATCA 508
|||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 357 TCGACGTCATCGCCGTTGTTCATTCAGAACGAGATACTTAAAGCACCTAGTCCTAAATCA 416
Query 509 TCGGATCTCCCAGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCTGTGAAGAAA 568
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 TCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGAAGAAA 476
Query 569 GGGAAAGTCGAGAGAGTTAGATTCAGCAAAGATGGTTCTGTTGTTCAGCTTACTGCCGTC 628
|| || || ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 477 GGTAAGGTGGAGAGAGTTAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTTACTGCTGTC 536
Query 629 GACAATCGCCGTGCTTCAGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 688
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACAATCGCCGTGCCTCCGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 596
Query 689 ATGAACGGAGTTGATATATCCGTCTCTGAAGGAGAATCCTCAGGCAATGACTTGTTCACT 748
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 597 ATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGACTTGTTCACT 656
Query 749 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 716
Query 809 CGAGCTCAGGGAGGCCCTGGTGGTGGTCCTGGTGGCTTGGGTGGTCCTATGGATTTCGGA 868
||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 717 CGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTCCTATGGATTTCGGA 776
Query 869 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTATCATTTGCAGATGTTGCT 928
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 777 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCATTCGCAGATGTTGCT 836
Query 929 GGGGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 988
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGTGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 896
Query 989 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 956
Query 1049 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGTGCCGTTCTTCTCT 1108
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 957 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGGAGTACCGTTCTTTTCT 1016
Query 1109 TGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATCGAGAGTTAGGGAT 1168
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1017 TGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGCATCTAGAGTTAGGGAT 1076
Query 1169 TTGTTCGAGAAGGCTAAGTCTAAAGCCCCTTGTATTGTATTCATTGATGAGATTGACGCT 1228
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1077 TTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCATTGATGAGATTGATGCT 1136
Query 1229 GTGGGTAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1288
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1196
Query 1289 AATCAGCTGTTGACAGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1348
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AATCAGTTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1256
Query 1349 GCTACGAATAGGCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGA 1408
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 GCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGCCTGGAAGGTTTGATCGA 1316
Query 1409 CAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGGTTCATTCT 1468
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 CAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTCCAGGTTCATTCT 1376
Query 1469 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCCAGAAGGACCCCTGGT 1528
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1377 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCGAGGAGGACCCCCGGT 1436
Query 1529 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCGGCTAGGCGT 1588
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1437 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCAGCCAGGCGT 1496
Query 1589 GAGCTTAAGGAAATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1648
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1556
Query 1649 CCTGAGAAGAAGAATGCAGTTGTCTCTGAAGAGAAGAAGAGACTTGTTGCATACCATGAG 1708
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1557 CCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGAGACTTGTTGCATACCATGAG 1616
Query 1709 GCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAATATGATCCGGTTGCAAAGATTTCT 1768
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 GCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATGATCCGGTTGCAAAGATTTCC 1676
Query 1769 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttGCTCCAAGCGAAGAAAGACTT 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACTTTTTTTGCTCCAAGCGAAGAAAGACTT 1736
Query 1829 GAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGCGGA 1888
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1737 GAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAATGGCTGTTGCACTTGGCGGA 1796
Query 1889 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACTGGAGCATCAAATGAT 1948
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1797 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACCGGAGCATCAAATGAT 1856
Query 1949 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGGTTCAGCAAAAAG 2008
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1857 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGCTTCAGCAAAAAG 1916
Query 2009 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTCATGGGTCAACAAATGTCA 2068
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1917 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTTATGGGTCAACAAATGTCA 1976
Query 2069 TCACAGAAAGATTACTCAATGGCAACTGCGGATATTGTAGATGCTGAGGTGCGAGAGTTA 2128
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1977 TCACAGAAAGATTACTCAATGGCAACTGCAGATATTGTAGATGCTGAGGTGCGAGAGTTA 2036
Query 2129 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2096
Query 2189 AAGCTTGCACAGCTCCTGATCGAGAAAGAAACTGTTGACGGTGAAGAGTTCATGAGTCTC 2248
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2097 AAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTGACGGCGAAGAGTTCATGAGCCTC 2156
Query 2249 TTTATTGACGGCCAAGCTGAGTTGTATATTTCTTGATTCCTCAAAGTTGCCATTGCTTAG 2308
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2157 TTTATTGACGGCCAAGCTGAGTTGTATATATCTTGATTCCTCAAAGTTGTCATTGCTTAG 2216
Query 2309 TGCTTACAATACCATAAGCTAATAAGTATATTCGTGTTCATATGTGTCACC 2359
||||||||||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 2217 TGCTTACAATATCATTAGCTTATAAGTATATTTGTGTTCATATGTGTCACC 2267
> Ahg494803 jgi|Araly1|494803|fgenesh2_kg.8__619__AT5G42270.1
Length=2326
Score = 1786 bits (967), Expect = 0.0
Identities = 1526/1797 (85%), Gaps = 34/1797 (2%)
Strand=Plus/Plus
Query 504 AATCATCGGATCTCCCAGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCTGTGA 563
||||||||||||| || || ||| |||||||||||||||| |||||||| || |||||||
Sbjct 495 AATCATCGGATCTTCCTGATGGAACACAGTGGCGATACAGTGAGTTTCTAAATGCTGTGA 554
Query 564 AGAAAGGGAAAGTCGAGAGAGTTAGATTCAGCAAAGATGGTTCTGTTGTTCAGCTTACTG 623
||||||| ||||| |||||||| | ||| || ||||||||||||||| ||||||| || |
Sbjct 555 AGAAAGGTAAAGTTGAGAGAGTGAAATTTAGTAAAGATGGTTCTGTTCTTCAGCTAACAG 614
Query 624 CCGTCGACAATCGCCGTGCTTCAGTCATCGTCCCTAACGACCCTGACCTT-ATTGATATC 682
| || || ||||| |||||| | || || || ||||| || || || || |||||||||
Sbjct 615 CTGTTGATAATCGTCGTGCTACTGTTATTGTTCCTAATGATCCGGA-TTTGATTGATATC 673
Query 683 TTGGCTATGAACGGAGTTGATATATCCGTCTCTGAAGGAGAATCCTCAGGCAATGACTTG 742
||||| ||||| || || |||||||| || || |||||||||| || || |||| |||
Sbjct 674 TTGGCGATGAATGGTGTCGATATATCGGTTTCGGAAGGAGAAT-CT--GGAAATGGGTTG 730
Query 743 -TTCACTGTCATTGGAAACTTGATTTTCCCGCTT-TTGGCCTTTGGTGGACTCTTCTT-G 799
|| | | ||||||| || ||| |||| || || ||||| ||||| || | || ||
Sbjct 731 TTTGA-TTTCATTGGTAATTTGCTTTTTCC-TTTGTTGGCTTTTGGAGGGTTGTT-TTAT 787
Query 800 CT-TTTCAGGCGAGCTCAGGGAGGCCCTGGTGGTGGTCCTGGTGGCTTGGGTGGTCCTAT 858
|| ||| ||| ||| ||||||||| || |||||||||||| || || || ||||||||
Sbjct 788 CTCTTT-AGGGGAGGTCAGGGAGG---TGCTGGTGGTCCTGGAGGTTTAGGAGGTCCTAT 843
Query 859 GGATTTCGGACGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGT-ATCATTTG 917
|||||||||| | || ||||| ||||| ||||||||||| || ||||| || | | ||||
Sbjct 844 GGATTTCGGAAGATCGAAATCGAAGTTTCAGGAAGTGCCGGAAACTGGGGTGA-CGTTTG 902
Query 918 CAGATGTTGCTGGGGCTGATCAAGCTAAG-TTGGAGTTACAGGAAGTTGTGGATTTCTTG 976
||||||||||| ||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct 903 GTGATGTTGCTGGAGCTGATCAAGCTAAGCTT-GAGTTACAAGAAGTTGTTGATTTCTTG 961
Query 977 AAGAATCCTGATAAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTT-GT 1035
||||||||||||||||| || || || ||||||||||||||||||||||||||| || ||
Sbjct 962 AAGAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATTCCTAAAGGGTGTTTG-TTGGT 1020
Query 1036 TGGACCGCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGT 1095
||| || || |||||||| ||||| || ||||||| || |||||||| ||||| |||||
Sbjct 1021 TGGTCCACCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGT 1080
Query 1096 GCCGTTCTTCTCTTGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATC 1155
||||||||| || || || || |||||||| || ||||||||||| ||||||||||| ||
Sbjct 1081 GCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTC 1140
Query 1156 GAGAGTTAGGGATTTGTTCGAGAAGGCTAAGTCTAAAGCCCCTTGTATTGTATTCATTGA 1215
||||||||||||||||| |||||||| || || ||||| ||||||||||| || |||||
Sbjct 1141 TAGAGTTAGGGATTTGTTTGAGAAGGCGAAATCGAAAGCTCCTTGTATTGTGTTTATTGA 1200
Query 1216 TGAGATTGACGCTGTGGGTAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAG 1275
||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1201 TGAGATTGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGTGGAAATGATGAGAG 1260
Query 1276 AGAACAGACTATTAATCAGCTGTTGACAGAGATGGATGGATTTTCTGGCAACTCTGGTGT 1335
||||||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||||||
Sbjct 1261 AGAACAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGT 1320
Query 1336 GATAGTTTTGGCAGCTACGAATAGGCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGG 1395
|| || ||||| || || ||||| ||||| |||||||| || || ||| |||| |||||
Sbjct 1321 CATTGTGTTGGCTGCAACCAATAGACCGGATGTTCTTGACTCCGCATTGCTGAGACCTGG 1380
Query 1396 AAGGTTTGATCGACAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCT 1455
|| ||||| || || ||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1381 TAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCTGGAAGAGTCAAGATCCT 1440
Query 1456 TCAGGTTCATTCTAGGGGGAAGGC-ACTCGGTAAAGATGTGGACTT-TGACAAGGTTGCC 1513
||||| |||||||| |||||||| | | || || |||||||| || ||| || |||||
Sbjct 1441 GCAGGTGCATTCTAGAGGGAAGGCTA-TTGGGAAGGATGTGGA-TTATGAGAAAGTTGCG 1498
Query 1514 AGAAGGACCCCTGGTTTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATT 1573
|| || || || |||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1499 AGGAGAACTCCGGGTTTCACTGGTGCTGATTTACAGAACCTGATGAATGAAGCTGCGATT 1558
Query 1574 CTTGCGGCTAGGCGTGAGCTTAAGGAAATAAGCAAGGATGAAATCTCTGATGCTCTTGAG 1633
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1559 CTTGCGGCTAGACGTGAGCTTAAGGAGATAAGCAAGGATGAAATATCCGATGCTCTTGAG 1618
Query 1634 AGGATCATTGCTGGACCTGAGAAGAAGAATGCAGTTGTCTCTGAAGAGAAGAAGAGACTT 1693
||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct 1619 AGGATCATTGCTGGACCGGAGAAGAAGAATGCTGTTGTCTCAGAGGAGAAGAAGAGACTT 1678
Query 1694 GTTGCATACCATGAGGCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAATATGATCCG 1753
||||| || ||||||||||| |||||| |||| ||||| |||||||| || || |||||
Sbjct 1679 GTTGCTTATCATGAGGCTGGGCATGCTTTAGTTGGTGCACTTATGCCGGAGTACGATCCA 1738
Query 1754 GTTGCAAAGATTTCTATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttGCTCCA 1813
|| || ||||| || || ||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct 1739 GTGGCCAAGATATCGATTATTCCACGTGGTCAAGCTGGTGGGCTCACCTTTTTCGCCCCT 1798
Query 1814 AGCGAAGAAAGACTTGAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCT 1873
|||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1799 AGCGAAGAGAGACTTGAGTCTGGATTGTATAGCAGAAGCTACCTTGAGAATCAAATGGCT 1858
Query 1874 GTTGCACTTGGCGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACT 1933
||||||||||| |||||||||||||| |||||||||||||| || |||||||| || ||
Sbjct 1859 GTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGATCTTTGGTGACGAGAATGTAACAACC 1918
Query 1934 GGAGCATCAAATGATTTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTT 1993
||||||||||| ||||||||||||||||| || ||||| || |||||| ||||||||||
Sbjct 1919 GGAGCATCAAACGATTTCATGCAGGTGTCACGAGTGGCTCGCCAAATGGTTGAGAGATTC 1978
Query 1994 GGGTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTT-CAT 2052
||||||||||||||||||||||||||||| |||||||| | || ||||| ||||| | |
Sbjct 1979 GGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAA-CCCTTTCTT 2037
Query 2053 GGGTCAACAA-ATGTCATCACAGAAAGATTACTCAATGGCAACTGCGGATATTGTAGATG 2111
||||||| | |||||||||||||| ||||||||||||||||| |||||| | || ||||
Sbjct 2038 GGGTCAA-AGTATGTCATCACAGAAGGATTACTCAATGGCAACAGCGGATGTGGTTGATG 2096
Query 2112 CTGAGGTGCGAGAGTTAGTTGAGAAGGCATACAAGAGAGC-AACGGAGATCATAACAACT 2170
| || ||| ||||| | || |||||||| ||| ||| || || | |||||||||||||
Sbjct 2097 CCGAAGTGAGAGAGCTGGTAGAGAAGGCGTACGTGAGGGCGAAAG-AGATCATAACAACA 2155
Query 2171 CATATTGATATCCTACACAAGCTTGCACAGCTCCTGATCGAGAAAGAAACTGTTGACGGT 2230
|| ||||||||| ||||||||||||| |||||||| || |||||||||||||| || ||
Sbjct 2156 CAAATTGATATCTTACACAAGCTTGCGCAGCTCCTAATTGAGAAAGAAACTGTGGATGGA 2215
Query 2231 GAAGAGTTCATGAGTCTCTTT-ATTGACGGCCAAGCTGAGTTGTATATTTCTTGATT 2286
|||||||||||||| || ||| |||||||| ||||||||||||||| |||||| |||
Sbjct 2216 GAAGAGTTCATGAGCCT-TTTCATTGACGGACAAGCTGAGTTGTATGTTTCTTAATT 2271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5